CmaCh11G014960 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G014960
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	30S ribosomal protein S21, chloroplastic-like
Location	Cma_Chr11: 9837210 .. 9839345 (-)
RNA-Seq Expression	CmaCh11G014960
Synteny	CmaCh11G014960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATGGATAGATGTCTCCAATTTACAAACTTCCGCGCACAGAAAATTCTGGGTCTTACAAAAAGAGAGAGAATTCGCATCAATTGAAGGCCGAATTCTCAGCCAGAGCCATCCATGGCTTCTCTCTCCACCTTCTTCTCCTTCCTCTTACCCTCAAAACCACCTCCCCCAAAACCCCAACAGCCCTTCATTGCCTCTCCTTCTCCGGCGACTCAGTTCCAAACCCTAAAATCCAGAGATGAATCGGTATCCCTAAAGCCCCTACAGGGTCCGAGTCATTCCGAGCCCTTATCGGCGGAATTAGCCTCTGTTATCTGTCCTTCGCTGGCCTTTGCCAATACTATGTTCTTCAATTCGGCGTATAATGTTCAGGTGATTGTGGATGACAATGAGCCGGAAGAGCGGCTTCTGGGTAGATTCCGGCGAGAGGTTATGAGGGCTGGTGTGATTCAGGAGTGTAAGAGACGGAGATACTTTGAGAATACTCAGGATACAAGGAAGCGTAAGACTCGCGAGGCTGCTAAACGCAACCGCCGGAGGTTTGTTCTTGGAATTTCTTGTGGATTCTTTTGGGATTTTTCTGATTCTTGGTTCTTTGATTCTGAAACTGTCTATGATTGTTTGTTTGTTGGGATTTGTTTTCTGTTTGAGTGTTGAATTTGATTGCTAGGAAGGTAATAGAGGCCTTTCCAAGAATTGTCTTGTGAATATGAAAGGTTTGTATGTAGAGGTTTACTCTTGACTGGCCTAATGTTCTTCCAAGGTTAAACTATAACAAGGGACGAGTTCAAGCTATGGTAGCCAGCTACGTAATGTTAGCGAGTAGTTATCTTGACAACCAAATGTAGTAGAGTCGGTAAAAATAGCCGAGGTGCACACAAGCGGGTGCAAACACTCGTCCACGTATAGAAAGAAGAGGCTAAACTATAATAACGTAGAACAAAAGAGAAAATAGGCACACTTCCTTGATATTTTTTACCTATACTCTTTTGAGCAACTTAGGATATGGAGCTAGAATTAAGAGAAAGTAATGGGAGAAATCGAACCTATGTCTTGAGAGAGAACCTCTAGGTTTTAAAATGCGTCTATTGGGGAGAAGTTTTCACACCCTTATAAGGAATGTTTTGTTCCCTTCTCCAACCGATGTAGGATCTCATAATCCACCCCTTGGAGACCCACCATCCTCGCTGGTACACCGCCCGGTGTCTGGCTTTTATACCATTTGTAACAACCCAAGGCCACCGTTAGCAGATATTGTCCGTTTTTGTCCGTTACGTATCGTCGTCAGCATCATAATTTTAAAACGTGTTTGTTAGGGAGAAATTTTCACACCCTTATAAGGAATGTTTTGTTCCCCTCTCACACAATAGGTAACGACAATCTTTACCAAAAGGATCACGGATAGGATTAGGAAGGAAATAGGACAATTTCAAAAAGAACTTTTATCTAGTTCTATTTAGAGGGAGTTTTAGCTTGAGAGGAACGTTATGATTTTTCGGGATTGGAGAGATCTGAGGATGAACCTCGGAAGTTGATTAGTTTTAACTCTTTGTTACGAACGTTTGTTAATCGAGCATTTGGCCATTCTTGTAGCTAGTGTGGGTCTCCTTTTGGTGGACTCATTTTCTGTATGCTCTCGTACATTCTTTCATATTTCTCTTCAAAAGCTCGGGTTTTCTTTCTTTCTTTTTTGCGAAGGAGATCTAAGATGGAAATTCTGGGCTAAGTTGTTTAATGATTTGGGTTGAACAGGCGCCCATTCACAAGAATTACACCAGAGAACAAGCAGGATGTGCCTGCAACCAAGCAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGGCATTCCAAATTAACCTAATCCAGAAGTTCAGTCCACCAAAATGTTTAATGTTTTCTGCTCATCTTTAGATTTTGGGAAGCTGGTAGTACTCTGTAATGTAAGTTATTTTCCATGTTAGATCTTCTTTAGTTGAGGAGTTTTTGCAATGTTCCTTATGAACAAGTAGAAATGGCCATTCCTTGTACGTATGAATTCCGGTAGAGATGGTTAAATTACAAGTCTAGTCCACCAGCTTTTAATTTGGTGTATTTTATAATTTGTTTAATAAAGTTTCGAATTTTGTGCGTGAT

mRNA sequence

CATGGATAGATGTCTCCAATTTACAAACTTCCGCGCACAGAAAATTCTGGGTCTTACAAAAAGAGAGAGAATTCGCATCAATTGAAGGCCGAATTCTCAGCCAGAGCCATCCATGGCTTCTCTCTCCACCTTCTTCTCCTTCCTCTTACCCTCAAAACCACCTCCCCCAAAACCCCAACAGCCCTTCATTGCCTCTCCTTCTCCGGCGACTCAGTTCCAAACCCTAAAATCCAGAGATGAATCGGTATCCCTAAAGCCCCTACAGGGTCCGAGTCATTCCGAGCCCTTATCGGCGGAATTAGCCTCTGTTATCTGTCCTTCGCTGGCCTTTGCCAATACTATGTTCTTCAATTCGGCGTATAATGTTCAGGTGATTGTGGATGACAATGAGCCGGAAGAGCGGCTTCTGGGTAGATTCCGGCGAGAGGTTATGAGGGCTGGTGTGATTCAGGAGTGTAAGAGACGGAGATACTTTGAGAATACTCAGGATACAAGGAAGCGTAAGACTCGCGAGGCTGCTAAACGCAACCGCCGGAGGCGCCCATTCACAAGAATTACACCAGAGAACAAGCAGGATGTGCCTGCAACCAAGCAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGGCATTCCAAATTAACCTAATCCAGAAGTTCAGTCCACCAAAATGTTTAATGTTTTCTGCTCATCTTTAGATTTTGGGAAGCTGGTAGTACTCTGTAATGTAAGTTATTTTCCATGTTAGATCTTCTTTAGTTGAGGAGTTTTTGCAATGTTCCTTATGAACAAGTAGAAATGGCCATTCCTTGTACGTATGAATTCCGGTAGAGATGGTTAAATTACAAGTCTAGTCCACCAGCTTTTAATTTGGTGTATTTTATAATTTGTTTAATAAAGTTTCGAATTTTGTGCGTGAT

Coding sequence (CDS)

ATGGCTTCTCTCTCCACCTTCTTCTCCTTCCTCTTACCCTCAAAACCACCTCCCCCAAAACCCCAACAGCCCTTCATTGCCTCTCCTTCTCCGGCGACTCAGTTCCAAACCCTAAAATCCAGAGATGAATCGGTATCCCTAAAGCCCCTACAGGGTCCGAGTCATTCCGAGCCCTTATCGGCGGAATTAGCCTCTGTTATCTGTCCTTCGCTGGCCTTTGCCAATACTATGTTCTTCAATTCGGCGTATAATGTTCAGGTGATTGTGGATGACAATGAGCCGGAAGAGCGGCTTCTGGGTAGATTCCGGCGAGAGGTTATGAGGGCTGGTGTGATTCAGGAGTGTAAGAGACGGAGATACTTTGAGAATACTCAGGATACAAGGAAGCGTAAGACTCGCGAGGCTGCTAAACGCAACCGCCGGAGGCGCCCATTCACAAGAATTACACCAGAGAACAAGCAGGATGTGCCTGCAACCAAGCAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGGCATTCCAAATTAA

Protein sequence

MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQFQTLKSRDESVSLKPLQGPSHSEPLSAELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN

Homology

[Close]

BLAST of CmaCh11G014960 vs. ExPASy Swiss-Prot
Match: P82024 (30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 PE=1 SV=2)

HSP 1 Score: 154.8 bits (390), Expect = 8.9e-37
Identity = 94/181 (51.93%), Postives = 116/181 (64.09%), Query Frame = 0


Query: 2   ASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQFQTLKSRDESVSLKPLQ----GPSHSE 61
           +SL  F S L PS    P    P   +P+      +L S+  S+S+   +      +  E
Sbjct: 5   SSLLNFLSPLFPSNTSLPPSSNPKFPNPN------SLSSQQNSISISSKKHENAAIAKKE 64

Query: 62  PLSAELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQECKR 121
               +L +V+CPSLAF+NT++F SAYNVQV+VDDNE EERLL RFRREVMRAGVIQECKR
Sbjct: 65  EYPGDLMAVVCPSLAFSNTLYFRSAYNVQVLVDDNENEERLLNRFRREVMRAGVIQECKR 124

Query: 122 RRYFENTQDTRKRKTREAAKRNRRRR--PFTRITPENKQDVPATKQEADDDNWDLPEEGI 177
           RRYFEN Q+ +KRK REAAKRN RRR  PF    P  ++     K+E D DNWD+PE G 
Sbjct: 125 RRYFENKQEEKKRKHREAAKRNSRRRRGPFRGPFPGKEEATKVDKKEDDGDNWDMPEGGA 179

[Close]

BLAST of CmaCh11G014960 vs. ExPASy Swiss-Prot
Match: P48949 (30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rpsU PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.8e-04
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 86  QVIVDDNEPEERLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRR 144
           QV+V  NEP E  L RF+R+V +AG+  + K+ ++FE  Q+  KRK  EA +R +R R
Sbjct: 3   QVVVGQNEPIESALRRFKRQVAKAGIYTDFKKHQFFETPQEKHKRK--EATRRRQRSR 58

[Close]

BLAST of CmaCh11G014960 vs. ExPASy TrEMBL
Match: A0A6J1JQ53 (30S ribosomal protein S21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111486728 PE=3 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.1e-90
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQFQTLKSRDESVSLKPLQGPSHSEPLS 60
           MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQFQTLKSRDESVSLKPLQGPSHSEPLS
Sbjct: 1   MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQFQTLKSRDESVSLKPLQGPSHSEPLS 60

Query: 61  AELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQECKRRRY 120
           AELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQECKRRRY
Sbjct: 61  AELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQECKRRRY 120

Query: 121 FENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN 178
           FENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN
Sbjct: 121 FENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN 177

[Close]

BLAST of CmaCh11G014960 vs. ExPASy TrEMBL
Match: A0A6J1EJK9 (30S ribosomal protein S21, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111435188 PE=3 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.1e-87
Identity = 175/181 (96.69%), Postives = 176/181 (97.24%), Query Frame = 0


Query: 1   MASLSTFFSFLLPSKPPPPKPQQPFIASPSPAT----QFQTLKSRDESVSLKPLQGPSHS 60
           MASLSTFFSFLLPSKPPPPKPQQPFIASPSPAT    QFQTLKSRDESVSLKPLQG +HS
Sbjct: 1   MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHS 60

Query: 61  EPLSAELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQECK 120
           EPLSAELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQECK
Sbjct: 61  EPLSAELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQECK 120

Query: 121 RRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIP 178
           RRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIP
Sbjct: 121 RRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIP 180

[Close]

BLAST of CmaCh11G014960 vs. ExPASy TrEMBL
Match: A0A5D3C287 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001120 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.7e-75
Identity = 157/178 (88.20%), Postives = 162/178 (91.01%), Query Frame = 0


Query: 1   MASLSTFFSFLLPSKPPPPKPQQPFIA-SPSP----ATQFQTLKSRDESVSLKPLQGPSH 60
           MASLS+FFSFLLPSKPPPPKP QP IA SPSP    A QFQTLKSRD SV+LKP QGP+H
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 60

Query: 61  SEPLSAELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAFANTMFF SAYNVQVIVDDNEPEERLL RFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 KRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEE 174
           KRRR+FENTQD RKRKTREAAKRNRRRRP  R TP+NKQDVPATKQEADDDNWDLPEE
Sbjct: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEE 178

[Close]

BLAST of CmaCh11G014960 vs. ExPASy TrEMBL
Match: A0A1S3BNG4 (uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.7e-75
Identity = 157/178 (88.20%), Postives = 162/178 (91.01%), Query Frame = 0


Query: 1   MASLSTFFSFLLPSKPPPPKPQQPFIA-SPSP----ATQFQTLKSRDESVSLKPLQGPSH 60
           MASLS+FFSFLLPSKPPPPKP QP IA SPSP    A QFQTLKSRD SV+LKP QGP+H
Sbjct: 49  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 108

Query: 61  SEPLSAELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAFANTMFF SAYNVQVIVDDNEPEERLL RFRREVMRAGVIQEC
Sbjct: 109 SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 168

Query: 121 KRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEE 174
           KRRR+FENTQD RKRKTREAAKRNRRRRP  R TP+NKQDVPATKQEADDDNWDLPEE
Sbjct: 169 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEE 226

[Close]

BLAST of CmaCh11G014960 vs. ExPASy TrEMBL
Match: Q8VWX5 (Ribosome-like protein (Fragment) OS=Cucumis sativus OX=3659 GN=rpo1 PE=2 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 6.5e-75
Identity = 157/183 (85.79%), Postives = 165/183 (90.16%), Query Frame = 0


Query: 1   MASLSTFFSFLLPSKPPPPKPQQPFIA-SPSP----ATQFQTLKSRDESVSLKPLQGPSH 60
           MASLS+FFSFLLPSKPPPPKP QPFIA SPSP    A QFQTLKSRD SV+L P QGP+H
Sbjct: 8   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 67

Query: 61  SEPLSAELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLA+ANTMFF SAYNVQV+VDDNEPEERLL RFRREVMRAGVIQEC
Sbjct: 68  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 127

Query: 121 KRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPE-EG 178
           KRRR+FENTQD RKRKTREAAKRNRRRRP  R TP+NKQDVPATKQEADDDNWDLPE E 
Sbjct: 128 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 187

[Close]

BLAST of CmaCh11G014960 vs. NCBI nr
Match: XP_022989729.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 342.4 bits (877), Expect = 2.3e-90
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQFQTLKSRDESVSLKPLQGPSHSEPLS 60
           MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQFQTLKSRDESVSLKPLQGPSHSEPLS
Sbjct: 1   MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQFQTLKSRDESVSLKPLQGPSHSEPLS 60

Query: 61  AELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQECKRRRY 120
           AELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQECKRRRY
Sbjct: 61  AELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQECKRRRY 120

Query: 121 FENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN 178
           FENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN
Sbjct: 121 FENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN 177

[Close]

BLAST of CmaCh11G014960 vs. NCBI nr
Match: XP_022928327.1 (30S ribosomal protein S21, chloroplastic [Cucurbita moschata])

HSP 1 Score: 332.4 bits (851), Expect = 2.4e-87
Identity = 175/181 (96.69%), Postives = 176/181 (97.24%), Query Frame = 0


Query: 1   MASLSTFFSFLLPSKPPPPKPQQPFIASPSPAT----QFQTLKSRDESVSLKPLQGPSHS 60
           MASLSTFFSFLLPSKPPPPKPQQPFIASPSPAT    QFQTLKSRDESVSLKPLQG +HS
Sbjct: 1   MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHS 60

Query: 61  EPLSAELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQECK 120
           EPLSAELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQECK
Sbjct: 61  EPLSAELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQECK 120

Query: 121 RRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIP 178
           RRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIP
Sbjct: 121 RRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIP 180

[Close]

BLAST of CmaCh11G014960 vs. NCBI nr
Match: KAG6588905.1 (30S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022670.1 30S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 331.3 bits (848), Expect = 5.3e-87
Identity = 174/181 (96.13%), Postives = 176/181 (97.24%), Query Frame = 0


Query: 1   MASLSTFFSFLLPSKPPPPKPQQPFIASPSPAT----QFQTLKSRDESVSLKPLQGPSHS 60
           MASLSTFFSFLLPSKPPPPKPQQPFIASPSPAT    QFQTLKSRDESVSLKPLQG +HS
Sbjct: 1   MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHS 60

Query: 61  EPLSAELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQECK 120
           EPLSAELASVICPSLAF+NTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQECK
Sbjct: 61  EPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQECK 120

Query: 121 RRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIP 178
           RRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIP
Sbjct: 121 RRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIP 180

[Close]

BLAST of CmaCh11G014960 vs. NCBI nr
Match: XP_023531471.1 (30S ribosomal protein S21, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328.9 bits (842), Expect = 2.6e-86
Identity = 174/181 (96.13%), Postives = 175/181 (96.69%), Query Frame = 0


Query: 1   MASLSTFFSFLLPSKPPPPKPQQPFIASPSPAT----QFQTLKSRDESVSLKPLQGPSHS 60
           MASLSTFFSFLLPSKPPPPKPQQP IASPSPAT    QFQTLKSRDESVSLKPL+G SHS
Sbjct: 1   MASLSTFFSFLLPSKPPPPKPQQPLIASPSPATQSAAQFQTLKSRDESVSLKPLKGLSHS 60

Query: 61  EPLSAELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQECK 120
           EPLSAELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQECK
Sbjct: 61  EPLSAELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQECK 120

Query: 121 RRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIP 178
           RRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIP
Sbjct: 121 RRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIP 180

[Close]

BLAST of CmaCh11G014960 vs. NCBI nr
Match: XP_008450090.2 (PREDICTED: uncharacterized protein LOC103491780, partial [Cucumis melo])

HSP 1 Score: 292.0 bits (746), Expect = 3.5e-75
Identity = 157/178 (88.20%), Postives = 162/178 (91.01%), Query Frame = 0


Query: 1   MASLSTFFSFLLPSKPPPPKPQQPFIA-SPSP----ATQFQTLKSRDESVSLKPLQGPSH 60
           MASLS+FFSFLLPSKPPPPKP QP IA SPSP    A QFQTLKSRD SV+LKP QGP+H
Sbjct: 49  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 108

Query: 61  SEPLSAELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAFANTMFF SAYNVQVIVDDNEPEERLL RFRREVMRAGVIQEC
Sbjct: 109 SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 168

Query: 121 KRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEE 174
           KRRR+FENTQD RKRKTREAAKRNRRRRP  R TP+NKQDVPATKQEADDDNWDLPEE
Sbjct: 169 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEE 226

[Close]

BLAST of CmaCh11G014960 vs. TAIR 10
Match: AT3G27160.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 161.0 bits (406), Expect = 8.8e-40
Identity = 95/183 (51.91%), Postives = 128/183 (69.95%), Query Frame = 0


Query: 3   SLSTFFSFLLP----SKPPPPKPQQPFIASPSPATQFQTLKSRDESVSLKPLQGPSHSEP 62
           SL++F SF+ P    +KP PP    P +  PSP T  Q  ++     S+   +  S +  
Sbjct: 6   SLTSFISFISPFKSQTKPTPP----PNLTLPSP-TISQRRRNDLAIESMAVEETSSTASS 65

Query: 63  LSAELASVICPSLAFANTMFFNSAYNVQVIVDDNEPEERLLGRFRREVMRAGVIQECKRR 122
           LS+ELASVICPSLA++NT+FF+S YNVQV V+DNE EERL+ RFRREVMR GVIQECKRR
Sbjct: 66  LSSELASVICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVIQECKRR 125

Query: 123 RYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPAT----KQEADDDNWDLPEEG 178
           RYFEN QD +KR+TR+AAKRN++RRP  R T E +++  A     K++ ++DNW++P   
Sbjct: 126 RYFENKQDEKKRRTRDAAKRNKKRRPQARFTQETREEAAAATKSKKKDEEEDNWEMPGGD 183

[Close]

BLAST of CmaCh11G014960 vs. TAIR 10
Match: AT5G63300.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-20
Identity = 72/181 (39.78%), Postives = 108/181 (59.67%), Query Frame = 0


Query: 1   MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQFQTLKSRDESVSLKPLQGPSHSEPLS 60
           + SLS   S LL SKPP P   +P I  PS  +      S+  S++ K L    H + ++
Sbjct: 6   IVSLSELLSSLLSSKPPSPSSLKP-ITLPSSVS---ARTSQHLSMTTKILTA-EHDDVIN 65

Query: 61  AELASVICPSLAFANTMFFNSA-YNVQVIVDDNEPEERLLGRFRREVMRAGVIQECKRRR 120
                V  PSLA AN +FF S+ YNV+V+  D E EE+L+  F+R   RAGV+QE +RRR
Sbjct: 66  ----RVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRAGVLQESRRRR 125

Query: 121 YFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDV-----PATKQEADDDNWDLPEEG 176
           +FE++ + + RKT+EAAK+ R+RRP  +  P +  ++      A++++  DD+W+LP E 
Sbjct: 126 FFESSLEKKTRKTKEAAKKYRKRRPNPKPKPLSTSEIRKHNRNASREDEQDDHWELPPED 177

[Close]

BLAST of CmaCh11G014960 vs. TAIR 10
Match: AT5G63300.2 (Ribosomal protein S21 family protein )

HSP 1 Score: 82.4 bits (202), Expect = 4.0e-16
Identity = 62/146 (42.47%), Postives = 88/146 (60.27%), Query Frame = 0


Query: 1   MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQFQTLKSRDESVSLKPLQGPSHSEPLS 60
           + SLS   S LL SKPP P   +P I  PS  +      S+  S++ K L    H + ++
Sbjct: 6   IVSLSELLSSLLSSKPPSPSSLKP-ITLPSSVS---ARTSQHLSMTTKILTA-EHDDVIN 65

Query: 61  AELASVICPSLAFANTMFFNSA-YNVQVIVDDNEPEERLLGRFRREVMRAGVIQECKRRR 120
                V  PSLA AN +FF S+ YNV+V+  D E EE+L+  F+R   RAGV+QE +RRR
Sbjct: 66  ----RVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRAGVLQESRRRR 125

Query: 121 YFENTQDTRKRKTREAAKRNRRRRPF 146
           +FE++ + + RKT+EAAK+ R+R  F
Sbjct: 126 FFESSLEKKTRKTKEAAKKYRKRSDF 142

The following BLAST results are available for this feature:

BLAST of CmaCh11G014960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82024	8.9e-37	51.93	30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 P...	[more]
P48949	5.8e-04	44.83	30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111...	[more]

BLAST of CmaCh11G014960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JQ53	1.1e-90	100.00	30S ribosomal protein S21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1EJK9	1.1e-87	96.69	30S ribosomal protein S21, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5D3C287	1.7e-75	88.20	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BNG4	1.7e-75	88.20	uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=...	[more]
Q8VWX5	6.5e-75	85.79	Ribosome-like protein (Fragment) OS=Cucumis sativus OX=3659 GN=rpo1 PE=2 SV=1	[more]

BLAST of CmaCh11G014960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022989729.1	2.3e-90	100.00	30S ribosomal protein S21, chloroplastic-like [Cucurbita maxima]	[more]
XP_022928327.1	2.4e-87	96.69	30S ribosomal protein S21, chloroplastic [Cucurbita moschata]	[more]
KAG6588905.1	5.3e-87	96.13	30S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_023531471.1	2.6e-86	96.13	30S ribosomal protein S21, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_008450090.2	3.5e-75	88.20	PREDICTED: uncharacterized protein LOC103491780, partial [Cucumis melo]	[more]

BLAST of CmaCh11G014960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27160.1	8.8e-40	51.91	Ribosomal protein S21 family protein	[more]
AT5G63300.1	1.2e-20	39.78	Ribosomal protein S21 family protein	[more]
AT5G63300.2	4.0e-16	42.47	Ribosomal protein S21 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001911	Ribosomal protein S21	PRINTS	PR00976	RIBOSOMALS21	coord: 120..130 score: 33.33 coord: 96..105 score: 43.33 coord: 108..118 score: 38.64 coord: 88..96 score: 42.59
IPR001911	Ribosomal protein S21	PFAM	PF01165	Ribosomal_S21	coord: 86..140 e-value: 4.8E-20 score: 71.0
IPR001911	Ribosomal protein S21	TIGRFAM	TIGR00030	TIGR00030	coord: 85..142 e-value: 5.6E-13 score: 46.5
IPR001911	Ribosomal protein S21	PANTHER	PTHR21109	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21	coord: 3..176
IPR001911	Ribosomal protein S21	HAMAP	MF_00358	Ribosomal_S21	coord: 84..140 score: 13.214292
IPR038380	Ribosomal protein S21 superfamily	GENE3D	1.20.5.1150	Ribosomal protein S8	coord: 99..137 e-value: 3.7E-12 score: 47.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..53
None	No IPR available	PANTHER	PTHR21109:SF17	PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED	coord: 3..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G014960.1	CmaCh11G014960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome