CmaCh11G013830 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G013830
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr11: 9120028 .. 9120911 (-)
RNA-Seq ExpressionCmaCh11G013830
SyntenyCmaCh11G013830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTGTTTCTTTGTCAAGCGCGGAGGCTCACGTCAAGTGCCAAAGATTCACAACGATGATGGTAGCAAGAAGCCAATGGAAACTCAACGAGATAATACCATTGGTGAGGCGCCTGTAGAAATAAGCAACCAGAGACAACGCCAACGACAAGTAGATAGTAAGGAGAGAAAGACGACGTCGTCGATGGTGCAGGGACGAGGAGGGAGAAGTGAGTCGAGCGGGTGGCTTGCAGCATGGTTGGAAGAGGCGGAAGGTCATGGGGAGAAAAATGAAATAAAGGTCTCGAAGGAGGCAATCTAGAGGTGAATGCTAAAGGGATGATTTTGTATGAGTCGGGTGAATTTTGTGTCCTAACTTTGTTCCATTAATATTTTTTAATTTTCTTATTATTTTATTAAAAATACTCTTATTAAAAAATAACTGACCCAACTTAACCCGAAAATAGAGAATTGAGTTATAAAATTTGCTAGTAAAGAGAATAATTGAAAGTGATGGATTTTTAAAAAAAAAAAATCTTACTATTTTGACGGTCCTGATTTGATTCGATCGCACCTGAGAAATCGGGCGGACCCACAAATGTCAGTTTATCGTACTGTTAAAAGCAGCCAATAATTTCCCTTATTGTTTACGAAATTACATTTCTGTCCTTCAAAAACTTGTAAATTTATCTTCAATGGCGTCCATTGAAGATTTCAGACGCTTCGATTTTCATTTTTTCCCTCTCTGTTCTTCCTTGTTCATGTCTTTTCCAATTAGGTTTTCGTTTTACATTTATCAAATGCTCTCTTTTCCCTTCGATTTCGTTTCGATTTCATGGTTTGATTTCTTTAGCGGTTTTATCTGGTAAGCATTGCCTCGTTTTCATGGCGCTTTTTGATTAA

mRNA sequence

ATGGCTTGTTTCTTTGTCAAGCGCGGAGGCTCACGTCAAGTGCCAAAGATTCACAACGATGATGGTAGCAAGAAGCCAATGGAAACTCAACGAGATAATACCATTGGTGAGGCGCCTGTAGAAATAAGCAACCAGAGACAACGCCAACGACAAGTAGATAGTAAGGAGAGAAAGACGACGTCGTCGATGGTGCAGGGACGAGGAGGGAGAAGTGAGTCGAGCGGGTGGCTTGCAGCATGGTTGGAAGAGGCGGAAGGTCATGGGGAGAAAAATGAAATAAAGATTTCAGACGCTTCGATTTTCATTTTTTCCCTCTCTGTTCTTCCTTGTTCATGTCTTTTCCAATTAGGTTTTCGTTTTACATTTATCAAATGCTCTCTTTTCCCTTCGATTTCGTTTCGATTTCATGGTTTGATTTCTTTAGCGGTTTTATCTGGTAAGCATTGCCTCGTTTTCATGGCGCTTTTTGATTAA

Coding sequence (CDS)

ATGGCTTGTTTCTTTGTCAAGCGCGGAGGCTCACGTCAAGTGCCAAAGATTCACAACGATGATGGTAGCAAGAAGCCAATGGAAACTCAACGAGATAATACCATTGGTGAGGCGCCTGTAGAAATAAGCAACCAGAGACAACGCCAACGACAAGTAGATAGTAAGGAGAGAAAGACGACGTCGTCGATGGTGCAGGGACGAGGAGGGAGAAGTGAGTCGAGCGGGTGGCTTGCAGCATGGTTGGAAGAGGCGGAAGGTCATGGGGAGAAAAATGAAATAAAGATTTCAGACGCTTCGATTTTCATTTTTTCCCTCTCTGTTCTTCCTTGTTCATGTCTTTTCCAATTAGGTTTTCGTTTTACATTTATCAAATGCTCTCTTTTCCCTTCGATTTCGTTTCGATTTCATGGTTTGATTTCTTTAGCGGTTTTATCTGGTAAGCATTGCCTCGTTTTCATGGCGCTTTTTGATTAA

Protein sequence

MACFFVKRGGSRQVPKIHNDDGSKKPMETQRDNTIGEAPVEISNQRQRQRQVDSKERKTTSSMVQGRGGRSESSGWLAAWLEEAEGHGEKNEIKISDASIFIFSLSVLPCSCLFQLGFRFTFIKCSLFPSISFRFHGLISLAVLSGKHCLVFMALFD
Homology
[Close]
BLAST of CmaCh11G013830 vs. ExPASy TrEMBL
Match: A0A0A0K1A5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 44/99 (44.44%), Postives = 60/99 (60.61%), Query Frame = 0 

Query: 1  MACFFVKRGGSRQVPKIHNDDGSKKPMETQRDN--TIGEAPVEISNQRQRQRQVDSKERK 60
          M CF  K G   QV +I  D  ++K  + +RD+   IGEAP  +   R+  R+V SKERK
Sbjct: 1  MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60

Query: 61 ---TTSSMVQGRGGRSESSGWLAAWLEEAEGHGEKNEIK 95
             ++S + + +  R E  GWLAAWLEEAEG  EK+E+K
Sbjct: 61 MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVK 99

[Close]
BLAST of CmaCh11G013830 vs. NCBI nr
Match: KAG6589009.1 (hypothetical protein SDJN03_17574, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.4 bits (376), Expect = 2.5e-32
Identity = 76/94 (80.85%), Postives = 85/94 (90.43%), Query Frame = 0 

Query: 1  MACFFVKRGGSRQVPKIHNDDGSKKPMETQRDNTIGEAPVEISNQRQRQRQVDSKERKTT 60
          MACFF+K GGSRQVP+I NDDGSKKPMETQ+D+T+ EAPVEISNQRQ Q++VDSKERKTT
Sbjct: 1  MACFFLKCGGSRQVPRIQNDDGSKKPMETQQDDTVDEAPVEISNQRQHQQRVDSKERKTT 60

Query: 61 SSMVQGRGGRSESSGWLAAWLEEAEGHGEKNEIK 95
          S     RGG+SESSGWLAAWLEEAEGHGEK+EIK
Sbjct: 61 SLK---RGGKSESSGWLAAWLEEAEGHGEKDEIK 91

[Close]
BLAST of CmaCh11G013830 vs. NCBI nr
Match: KAG6589008.1 (hypothetical protein SDJN03_17573, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.1 bits (235), Expect = 5.6e-16
Identity = 49/84 (58.33%), Postives = 66/84 (78.57%), Query Frame = 0 

Query: 11  SRQVPKIHNDDGSKKPMETQRDNTIGEAPVEISNQRQRQRQVDSKERKTTSSMVQGRGGR 70
           S QV +I++D+GSKK  +TQRD+T+G+    I N+R+RQR+VD+KE+KT S  ++ RG R
Sbjct: 128 SCQVSRIYDDEGSKKSRKTQRDDTVGDTLEAIGNKRRRQRRVDNKEQKTMSFTLRQRGER 187

Query: 71  SESSGWLAAWLEEAEGHGEKNEIK 95
           +E  GWLAAWLEEAE H EK+EIK
Sbjct: 188 NELGGWLAAWLEEAESHTEKDEIK 211

[Close]
BLAST of CmaCh11G013830 vs. NCBI nr
Match: KGN43248.1 (hypothetical protein Csa_020351 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-08
Identity = 44/99 (44.44%), Postives = 60/99 (60.61%), Query Frame = 0 

Query: 1  MACFFVKRGGSRQVPKIHNDDGSKKPMETQRDN--TIGEAPVEISNQRQRQRQVDSKERK 60
          M CF  K G   QV +I  D  ++K  + +RD+   IGEAP  +   R+  R+V SKERK
Sbjct: 1  MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60

Query: 61 ---TTSSMVQGRGGRSESSGWLAAWLEEAEGHGEKNEIK 95
             ++S + + +  R E  GWLAAWLEEAEG  EK+E+K
Sbjct: 61 MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVK 99

The following BLAST results are available for this feature:
BLAST of CmaCh11G013830 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh11G013830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1A51.2e-0844.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1[more]
BLAST of CmaCh11G013830 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6589009.12.5e-3280.85hypothetical protein SDJN03_17574, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6589008.15.6e-1658.33hypothetical protein SDJN03_17573, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN43248.12.5e-0844.44hypothetical protein Csa_020351 [Cucumis sativus][more]
BLAST of CmaCh11G013830 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..31

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G013830.1CmaCh11G013830.1mRNA