CmaCh11G012610 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G012610
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	Cma_Chr11: 8471757 .. 8473838 (+)
RNA-Seq Expression	CmaCh11G012610
Synteny	CmaCh11G012610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTAACAAGCTTTCTCCCCGCAGCATTCCTTGTATTTTTTTGGGTTATAGTCCTGTTCATAAAGAGTTCCGCTGTCTTGATCCCGCCACCACTAAGCTATATATCACCTGCCATGCTCAATTTGATGAAACTCACTTTCCTGCTATCCCTAGCTCCCAAGCCCAACCTCTTTCCACTATTCCTATTTCAAATTTCTTGGAACCACATCTTCATCATATTGATTCATCCCCCCCTACCACTTCATCACCGCACATTCCTCAATCCAGTTCATCCCCGTGTGATATTTGTTCTGACCTTGTAGATGAATCTGTGCAGGTTGATACTTCTCTTGCAGGTTCCACTTTGCCACCTTCGACTTCTAATTCGACCTCTATTGAACCTCCTGTTGATTTCTCTTCTTTGGGCACTCATCCTATGATCACACGTGCCAAAGCTAGTATATTCAAGACTCGTCATCCAGCAAATCTTGGTATGTTGGGCTCATCTGGACTTCTCTTTGCTCTTCTTGCATCCACTGAGCCAAAAGGATTCAAATCTGCGGCTAAGAATCCAGCTTGGGTGGCTGCCATGGATGAAGAAATTCGAGCGTTACAACAAACTGATACTTGGACTTTGGTTCCTCGCTCTGCCAACACCAACATCGTGGGCTCTAAATGGATGTTTTGTATTAAATATTTGCCCGATGGATTCGTCGAGCGTTTCAAGGCTCGTCTCGTTGCCAAAGGTTATACTCAGGTTCCTGGTCTTGACTACACTGACACTTTCAGTCCGGTTGTCAAAGCTACCACTGTCCGTGTTGTGCTTTCTATTGCAGTCACAAATAAATGGCCTCTTCAACAACTTGATGTCAAGAATGTTTTTCTCAATGGAACGCTTATTGAACGTGTTCATATGGAACAACCTCCTGGGTATGTTGATCCTCGATTTCCTATGCATGTTTGTCTATTAAAGAAAGCTCTCTATGGCTTAAAGCAAGCTTCTCGTGCTTGGTTTCAGCGTTTTAGCTCATTTCTTCTCACACTTGGGTTTTCTTGCAGTCGCGCTGACACGTCCCTTTTTGTCTTTCATCAGCAATCTAACCTTATCTATTTGCTTCTTTATGTTGATGACATTATTGTTATCGACAACAACTCATCTCTTATTAACAGCTTTACTCGCAAGCTTCATTCTGAGTTTGCTACCAAAGATTTGGGTTCTCTCAGTTACTTTTTTGGTCTTGAAGCTTCACCCACTCCTGATGGTCTCTTTATCAGTCCGTTAAAATATGCTCGAGATATTCTTACTCGTGCTCAGTTGCTCGATAGCAAACCAGTTCACACTATCATGGTTGTTTCTCAACACCTGACTGTTGATGGTTCTCCTTTCTCTGATCCTACTCTCTACAGATCTCTTGTTGGCGCCCTTCAGTACTTGACTATTACGCATCCAGATATTGCCTATACTGTCAATTCTGTCAGTCAATTCTTGCATGCCCCTACTGCAGATCACTTTCTTGCTGACAAACGTATTCTTCGCTATGTCAAAGGAACACTCCACTTTGGTCTTACCTTTCGTCCATCCACTGTTCCTAGTACGCTAGTCGCTTATTCGGATGCTGACTGGGCTGGTTGTCCCGATACTCGTCGTTCTACATCCGGCTATTCTATTTATCTTGGTAACAATCTCATTTCTTGGAGTGCCAAAAAGCAACCTACTGTATCACGCTCCAGCTGTGAATCTGAGTATCGTGCTCTTGCCACAACTGTTGCTGAACTTCTTTGGGTTACGCATCTTTTGCATGACCTCAAGGTCCCTATTTCACAGCAACCCTTACTCTTATGTGACAACAAAAGTGCTATTTTTTTGAGCTCTAATCCTGTTTCTCACAAGCGGGCCAAACATGTTGAACTAGATTATCATTTCCTTCGAGAACTTGTTATCGCTGGCAAACTTCGCACACAATATGTACCCTCTCATCTCCAAGTTGCTGACATCTTCACAAAGAGTATTTCTCGACCTCTCTTTGAATTTTTCAGATCCAAGCTTCATGTTCGTTCAAATCCGACGCTCAGCTTGCGGGGGGGTGTTAAGGATAGTTGA

mRNA sequence

ATGCCTAACAAGCTTTCTCCCCGCAGCATTCCTTGTATTTTTTTGGGTTATAGTCCTGTTCATAAAGAGTTCCGCTGTCTTGATCCCGCCACCACTAAGCTATATATCACCTGCCATGCTCAATTTGATGAAACTCACTTTCCTGCTATCCCTAGCTCCCAAGCCCAACCTCTTTCCACTATTCCTATTTCAAATTTCTTGGAACCACATCTTCATCATATTGATTCATCCCCCCCTACCACTTCATCACCGCACATTCCTCAATCCAGTTCATCCCCGTGTGATATTTGTTCTGACCTTGTAGATGAATCTGTGCAGGTTGATACTTCTCTTGCAGGTTCCACTTTGCCACCTTCGACTTCTAATTCGACCTCTATTGAACCTCCTGTTGATTTCTCTTCTTTGGGCACTCATCCTATGATCACACGTGCCAAAGCTAGTATATTCAAGACTCGTCATCCAGCAAATCTTGGTATGTTGGGCTCATCTGGACTTCTCTTTGCTCTTCTTGCATCCACTGAGCCAAAAGGATTCAAATCTGCGGCTAAGAATCCAGCTTGGGTGGCTGCCATGGATGAAGAAATTCGAGCGTTACAACAAACTGATACTTGGACTTTGGTTCCTCGCTCTGCCAACACCAACATCGTGGGCTCTAAATGGATGTTTTGTATTAAATATTTGCCCGATGGATTCGTCGAGCGTTTCAAGGCTCGTCTCGTTGCCAAAGGTTATACTCAGGTTCCTGGTCTTGACTACACTGACACTTTCAGTCCGGTTGTCAAAGCTACCACTGTCCGTGTTGTGCTTTCTATTGCAGTCACAAATAAATGGCCTCTTCAACAACTTGATGTCAAGAATGTTTTTCTCAATGGAACGCTTATTGAACGTGTTCATATGGAACAACCTCCTGGGTATGTTGATCCTCGATTTCCTATGCATGTTTGTCTATTAAAGAAAGCTCTCTATGGCTTAAAGCAAGCTTCTCGTGCTTGGTTTCAGCGTTTTAGCTCATTTCTTCTCACACTTGGGTTTTCTTGCAGTCGCGCTGACACGTCCCTTTTTGTCTTTCATCAGCAATCTAACCTTATCTATTTGCTTCTTTATGTTGATGACATTATTGTTATCGACAACAACTCATCTCTTATTAACAGCTTTACTCGCAAGCTTCATTCTGAGTTTGCTACCAAAGATTTGGGTTCTCTCAGTTACTTTTTTGGTCTTGAAGCTTCACCCACTCCTGATGGTCTCTTTATCAGTCCGTTAAAATATGCTCGAGATATTCTTACTCGTGCTCAGTTGCTCGATAGCAAACCAGTTCACACTATCATGGTTGTTTCTCAACACCTGACTGTTGATGGTTCTCCTTTCTCTGATCCTACTCTCTACAGATCTCTTGTTGGCGCCCTTCAGTACTTGACTATTACGCATCCAGATATTGCCTATACTGTCAATTCTGTCAGTCAATTCTTGCATGCCCCTACTGCAGATCACTTTCTTGCTGACAAACGTATTCTTCGCTATGTCAAAGGAACACTCCACTTTGGTCTTACCTTTCGTCCATCCACTGTTCCTAGTACGCTAGTCGCTTATTCGGATGCTGACTGGGCTGGTTGTCCCGATACTCGTCGTTCTACATCCGGCTATTCTATTTATCTTGGTAACAATCTCATTTCTTGGAGTGCCAAAAAGCAACCTACTGTATCACGCTCCAGCTGTGAATCTGAGTATCGTGCTCTTGCCACAACTGTTGCTGAACTTCTTTGGGTTACGCATCTTTTGCATGACCTCAAGGTCCCTATTTCACAGCAACCCTTACTCTTATGTGACAACAAAAGTGCTATTTTTTTGAGCTCTAATCCTGTTTCTCACAAGCGGGCCAAACATGTTGAACTAGATTATCATTTCCTTCGAGAACTTGTTATCGCTGGCAAACTTCGCACACAATATGTACCCTCTCATCTCCAAGTTGCTGACATCTTCACAAAGAGTATTTCTCGACCTCTCTTTGAATTTTTCAGATCCAAGCTTCATGTTCGTTCAAATCCGACGCTCAGCTTGCGGGGGGGTGTTAAGGATAGTTGA

Coding sequence (CDS)

ATGCCTAACAAGCTTTCTCCCCGCAGCATTCCTTGTATTTTTTTGGGTTATAGTCCTGTTCATAAAGAGTTCCGCTGTCTTGATCCCGCCACCACTAAGCTATATATCACCTGCCATGCTCAATTTGATGAAACTCACTTTCCTGCTATCCCTAGCTCCCAAGCCCAACCTCTTTCCACTATTCCTATTTCAAATTTCTTGGAACCACATCTTCATCATATTGATTCATCCCCCCCTACCACTTCATCACCGCACATTCCTCAATCCAGTTCATCCCCGTGTGATATTTGTTCTGACCTTGTAGATGAATCTGTGCAGGTTGATACTTCTCTTGCAGGTTCCACTTTGCCACCTTCGACTTCTAATTCGACCTCTATTGAACCTCCTGTTGATTTCTCTTCTTTGGGCACTCATCCTATGATCACACGTGCCAAAGCTAGTATATTCAAGACTCGTCATCCAGCAAATCTTGGTATGTTGGGCTCATCTGGACTTCTCTTTGCTCTTCTTGCATCCACTGAGCCAAAAGGATTCAAATCTGCGGCTAAGAATCCAGCTTGGGTGGCTGCCATGGATGAAGAAATTCGAGCGTTACAACAAACTGATACTTGGACTTTGGTTCCTCGCTCTGCCAACACCAACATCGTGGGCTCTAAATGGATGTTTTGTATTAAATATTTGCCCGATGGATTCGTCGAGCGTTTCAAGGCTCGTCTCGTTGCCAAAGGTTATACTCAGGTTCCTGGTCTTGACTACACTGACACTTTCAGTCCGGTTGTCAAAGCTACCACTGTCCGTGTTGTGCTTTCTATTGCAGTCACAAATAAATGGCCTCTTCAACAACTTGATGTCAAGAATGTTTTTCTCAATGGAACGCTTATTGAACGTGTTCATATGGAACAACCTCCTGGGTATGTTGATCCTCGATTTCCTATGCATGTTTGTCTATTAAAGAAAGCTCTCTATGGCTTAAAGCAAGCTTCTCGTGCTTGGTTTCAGCGTTTTAGCTCATTTCTTCTCACACTTGGGTTTTCTTGCAGTCGCGCTGACACGTCCCTTTTTGTCTTTCATCAGCAATCTAACCTTATCTATTTGCTTCTTTATGTTGATGACATTATTGTTATCGACAACAACTCATCTCTTATTAACAGCTTTACTCGCAAGCTTCATTCTGAGTTTGCTACCAAAGATTTGGGTTCTCTCAGTTACTTTTTTGGTCTTGAAGCTTCACCCACTCCTGATGGTCTCTTTATCAGTCCGTTAAAATATGCTCGAGATATTCTTACTCGTGCTCAGTTGCTCGATAGCAAACCAGTTCACACTATCATGGTTGTTTCTCAACACCTGACTGTTGATGGTTCTCCTTTCTCTGATCCTACTCTCTACAGATCTCTTGTTGGCGCCCTTCAGTACTTGACTATTACGCATCCAGATATTGCCTATACTGTCAATTCTGTCAGTCAATTCTTGCATGCCCCTACTGCAGATCACTTTCTTGCTGACAAACGTATTCTTCGCTATGTCAAAGGAACACTCCACTTTGGTCTTACCTTTCGTCCATCCACTGTTCCTAGTACGCTAGTCGCTTATTCGGATGCTGACTGGGCTGGTTGTCCCGATACTCGTCGTTCTACATCCGGCTATTCTATTTATCTTGGTAACAATCTCATTTCTTGGAGTGCCAAAAAGCAACCTACTGTATCACGCTCCAGCTGTGAATCTGAGTATCGTGCTCTTGCCACAACTGTTGCTGAACTTCTTTGGGTTACGCATCTTTTGCATGACCTCAAGGTCCCTATTTCACAGCAACCCTTACTCTTATGTGACAACAAAAGTGCTATTTTTTTGAGCTCTAATCCTGTTTCTCACAAGCGGGCCAAACATGTTGAACTAGATTATCATTTCCTTCGAGAACTTGTTATCGCTGGCAAACTTCGCACACAATATGTACCCTCTCATCTCCAAGTTGCTGACATCTTCACAAAGAGTATTTCTCGACCTCTCTTTGAATTTTTCAGATCCAAGCTTCATGTTCGTTCAAATCCGACGCTCAGCTTGCGGGGGGGTGTTAAGGATAGTTGA

Protein sequence

MPNKLSPRSIPCIFLGYSPVHKEFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIPISNFLEPHLHHIDSSPPTTSSPHIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPPSTSNSTSIEPPVDFSSLGTHPMITRAKASIFKTRHPANLGMLGSSGLLFALLASTEPKGFKSAAKNPAWVAAMDEEIRALQQTDTWTLVPRSANTNIVGSKWMFCIKYLPDGFVERFKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLQQLDVKNVFLNGTLIERVHMEQPPGYVDPRFPMHVCLLKKALYGLKQASRAWFQRFSSFLLTLGFSCSRADTSLFVFHQQSNLIYLLLYVDDIIVIDNNSSLINSFTRKLHSEFATKDLGSLSYFFGLEASPTPDGLFISPLKYARDILTRAQLLDSKPVHTIMVVSQHLTVDGSPFSDPTLYRSLVGALQYLTITHPDIAYTVNSVSQFLHAPTADHFLADKRILRYVKGTLHFGLTFRPSTVPSTLVAYSDADWAGCPDTRRSTSGYSIYLGNNLISWSAKKQPTVSRSSCESEYRALATTVAELLWVTHLLHDLKVPISQQPLLLCDNKSAIFLSSNPVSHKRAKHVELDYHFLRELVIAGKLRTQYVPSHLQVADIFTKSISRPLFEFFRSKLHVRSNPTLSLRGGVKDS

Homology

[Close]

BLAST of CmaCh11G012610 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 1.7e-147
Identity = 308/769 (40.05%), Postives = 427/769 (55.53%), Query Frame = 0


Query: 3    NKLSPRSIPCIFLGYSPVHKEFRCLDPATTKLYITCHAQFDETHFP-------------- 62
            +KL  +S  C+FLGYS     + CL   T++LYI+ H +FDE  FP              
Sbjct: 705  HKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDENCFPFSNYLATLSPVQEQ 764

Query: 63   ---------------------------------AIPSSQAQPL--STIPISNFLEPHLHH 122
                                               PSS + P   S +  SN        
Sbjct: 765  RRESSCVWSPHTTLPTRTPVLPAPSCSDPHHAATPPSSPSAPFRNSQVSSSNLDSSFSSS 824

Query: 123  IDSSP-PTTSSPHIPQ------------------SSSSPCDICSDLVDESVQVDTSLAGS 182
              SSP PT    + PQ                  S ++P +     + +S+      + S
Sbjct: 825  FPSSPEPTAPRQNGPQPTTQPTQTQTQTHSSQNTSQNNPTNESPSQLAQSLSTPAQSSSS 884

Query: 183  TLPPSTSNSTS----------IEPPVDFSS---------LGTHPMITRAKASIFKTRHPA 242
            +  P+TS S+S          I PP   +          L TH M TRAKA I K     
Sbjct: 885  SPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNNQAPLNTHSMGTRAKAGIIKPNPKY 944

Query: 243  NLGMLGSSGLLFALLASTEPKGFKSAAKNPAWVAAMDEEIRALQQTDTWTLV-PRSANTN 302
            +L +        +L A +EP+    A K+  W  AM  EI A     TW LV P  ++  
Sbjct: 945  SLAV--------SLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVT 1004

Query: 303  IVGSKWMFCIKYLPDGFVERFKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVT 362
            IVG +W+F  KY  DG + R+KARLVAKGY Q PGLDY +TFSPV+K+T++R+VL +AV 
Sbjct: 1005 IVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVD 1064

Query: 363  NKWPLQQLDVKNVFLNGTLIERVHMEQPPGYVDPRFPMHVCLLKKALYGLKQASRAWFQR 422
              WP++QLDV N FL GTL + V+M QPPG++D   P +VC L+KALYGLKQA RAW+  
Sbjct: 1065 RSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVE 1124

Query: 423  FSSFLLTLGFSCSRADTSLFVFHQQSNLIYLLLYVDDIIVIDNNSSLINSFTRKLHSEFA 482
              ++LLT+GF  S +DTSLFV  +  +++Y+L+YVDDI++  N+ +L+++    L   F+
Sbjct: 1125 LRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFS 1184

Query: 483  TKDLGSLSYFFGLEASPTPDGLFISPLKYARDILTRAQLLDSKPVHTIMVVSQHLTV-DG 542
             KD   L YF G+EA   P GL +S  +Y  D+L R  ++ +KPV T M  S  L++  G
Sbjct: 1185 VKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSG 1244

Query: 543  SPFSDPTLYRSLVGALQYLTITHPDIAYTVNSVSQFLHAPTADHFLADKRILRYVKGTLH 602
            +  +DPT YR +VG+LQYL  T PDI+Y VN +SQF+H PT +H  A KRILRY+ GT +
Sbjct: 1245 TKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPN 1304

Query: 603  FGLTFRPSTVPSTLVAYSDADWAGCPDTRRSTSGYSIYLGNNLISWSAKKQPTVSRSSCE 662
             G+  +     S L AYSDADWAG  D   ST+GY +YLG++ ISWS+KKQ  V RSS E
Sbjct: 1305 HGIFLKKGNTLS-LHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTE 1364

Query: 663  SEYRALATTVAELLWVTHLLHDLKVPISQQPLLLCDNKSAIFLSSNPVSHKRAKHVELDY 683
            +EYR++A T +E+ W+  LL +L + +++ P++ CDN  A +L +NPV H R KH+ +DY
Sbjct: 1365 AEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDY 1424

[Close]

BLAST of CmaCh11G012610 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 515.0 bits (1325), Expect = 1.3e-144
Identity = 311/773 (40.23%), Postives = 423/773 (54.72%), Query Frame = 0


Query: 3    NKLSPRSIPCIFLGYSPVHKEFRCLDPATTKLYITCHAQFDETHFP------AIPSSQAQ 62
            +KL  +S  C F+GYS     + CL   T +LY + H QFDE  FP       + +SQ Q
Sbjct: 684  HKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFSTTNFGVSTSQEQ 743

Query: 63   ------------PLSTIPISNFLEPHL-HHIDSSP------------------------- 122
                         L T P+     P L  H+D+SP                         
Sbjct: 744  RSDSAPNWPSHTTLPTTPLVLPAPPCLGPHLDTSPRPPSSPSPLCTTQVSSSNLPSSSIS 803

Query: 123  ------PT---------TSSPHIPQSSSSPCDICSDLVDESVQVD--------------- 182
                  PT         T+ PH  Q+S+S   I ++    S   +               
Sbjct: 804  SPSSSEPTAPSHNGPQPTAQPHQTQNSNSNSPILNNPNPNSPSPNSPNQNSPLPQSPISS 863

Query: 183  -------TSLAGSTLPPSTSNSTSIEPPV----------DFSSLGTHPMITRAKASIFKT 242
                   TS++    P S+S ST   PPV            + + TH M TRAK  I K 
Sbjct: 864  PHIPTPSTSISEPNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAKDGIRKP 923

Query: 243  RHPANLGMLGSSGLLFALLASTEPKGFKSAAKNPAWVAAMDEEIRALQQTDTWTLV-PRS 302
                +           +L A++EP+    A K+  W  AM  EI A     TW LV P  
Sbjct: 924  NQKYSYAT--------SLAANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPP 983

Query: 303  ANTNIVGSKWMFCIKYLPDGFVERFKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLS 362
             +  IVG +W+F  K+  DG + R+KARLVAKGY Q PGLDY +TFSPV+K+T++R+VL 
Sbjct: 984  PSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLG 1043

Query: 363  IAVTNKWPLQQLDVKNVFLNGTLIERVHMEQPPGYVDPRFPMHVCLLKKALYGLKQASRA 422
            +AV   WP++QLDV N FL GTL + V+M QPPG+VD   P +VC L+KA+YGLKQA RA
Sbjct: 1044 VAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRA 1103

Query: 423  WFQRFSSFLLTLGFSCSRADTSLFVFHQQSNLIYLLLYVDDIIVIDNNSSLINSFTRKLH 482
            W+    ++LLT+GF  S +DTSLFV  +  ++IY+L+YVDDI++  N++ L+      L 
Sbjct: 1104 WYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALS 1163

Query: 483  SEFATKDLGSLSYFFGLEASPTPDGLFISPLKYARDILTRAQLLDSKPVHTIMVVSQHLT 542
              F+ K+   L YF G+EA   P GL +S  +Y  D+L R  +L +KPV T M  S  LT
Sbjct: 1164 QRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLT 1223

Query: 543  V-DGSPFSDPTLYRSLVGALQYLTITHPDIAYTVNSVSQFLHAPTADHFLADKRILRYVK 602
            +  G+   DPT YR +VG+LQYL  T PD++Y VN +SQ++H PT DH+ A KR+LRY+ 
Sbjct: 1224 LHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLA 1283

Query: 603  GTLHFGLTFRPSTVPSTLVAYSDADWAGCPDTRRSTSGYSIYLGNNLISWSAKKQPTVSR 662
            GT   G+  +     S L AYSDADWAG  D   ST+GY +YLG++ ISWS+KKQ  V R
Sbjct: 1284 GTPDHGIFLKKGNTLS-LHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVR 1343

Query: 663  SSCESEYRALATTVAELLWVTHLLHDLKVPISQQPLLLCDNKSAIFLSSNPVSHKRAKHV 683
            SS E+EYR++A T +EL W+  LL +L + +S  P++ CDN  A +L +NPV H R KH+
Sbjct: 1344 SSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHI 1403

[Close]

BLAST of CmaCh11G012610 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 323.9 bits (829), Expect = 4.3e-87
Identity = 179/496 (36.09%), Postives = 283/496 (57.06%), Query Frame = 0


Query: 186  AWVAAMDEEIRALQQTDTWTLVPRSANTNIVGSKWMFCIKYLPDGFVERFKARLVAKGYT 245
            +W  A++ E+ A +  +TWT+  R  N NIV S+W+F +KY   G   R+KARLVA+G+T
Sbjct: 905  SWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFT 964

Query: 246  QVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLQQLDVKNVFLNGTLIERVHMEQPPGY 305
            Q   +DY +TF+PV + ++ R +LS+ +     + Q+DVK  FLNGTL E ++M  P G 
Sbjct: 965  QKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI 1024

Query: 306  VDPRFPMHVCLLKKALYGLKQASRAWFQRFSSFLLTLGFSCSRADTSLFVFHQQ--SNLI 365
                   +VC L KA+YGLKQA+R WF+ F   L    F  S  D  +++  +   +  I
Sbjct: 1025 --SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENI 1084

Query: 366  YLLLYVDDIIVIDNNSSLINSFTRKLHSEFATKDLGSLSYFFGLEASPTPDGLFISPLKY 425
            Y+LLYVDD+++   + + +N+F R L  +F   DL  + +F G+      D +++S   Y
Sbjct: 1085 YVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAY 1144

Query: 426  ARDILTRAQLLDSKPVHTIMVVSQHLTVDGSPFSDPTLYRSLVGALQYLTI-THPDIAYT 485
             + IL++  + +   V T +    +  +  S     T  RSL+G L Y+ + T PD+   
Sbjct: 1145 VKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTA 1204

Query: 486  VNSVSQFLHAPTADHFLADKRILRYVKGTLHFGLTFRPS-TVPSTLVAYSDADWAGCPDT 545
            VN +S++     ++ +   KR+LRY+KGT+   L F+ +    + ++ Y D+DWAG    
Sbjct: 1205 VNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEID 1264

Query: 546  RRSTSGYSIYLGN-NLISWSAKKQPTVSRSSCESEYRALATTVAELLWVTHLLHDLKVPI 605
            R+ST+GY   + + NLI W+ K+Q +V+ SS E+EY AL   V E LW+  LL  + + +
Sbjct: 1265 RKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKL 1324

Query: 606  SQQPLLLCDNKSAIFLSSNPVSHKRAKHVELDYHFLRELVIAGKLRTQYVPSHLQVADIF 665
                 +  DN+  I +++NP  HKRAKH+++ YHF RE V    +  +Y+P+  Q+ADIF
Sbjct: 1325 ENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIF 1384

Query: 666  TKSISRPLFEFFRSKL 677
            TK +    F   R KL
Sbjct: 1385 TKPLPAARFVELRDKL 1398

[Close]

BLAST of CmaCh11G012610 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 3.1e-85
Identity = 222/696 (31.90%), Postives = 350/696 (50.29%), Query Frame = 0


Query: 4    KLSPRSIPCIFLGYSPVHKEFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIPI 63
            KL  +SIPCIF+GY      +R  DP   K+  +    F E+      +  ++ +    I
Sbjct: 666  KLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEV-RTAADMSEKVKNGII 725

Query: 64   SNFLEPHLHHIDSSPPTTSSPHIPQSS----SSPCDICSDLVDESVQVDTSLAGSTLPPS 123
             NF+        + P T+++P   +S+    S   +   +++++  Q+D  +        
Sbjct: 726  PNFV--------TIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGV-------- 785

Query: 124  TSNSTSIEPPVDFSSLGTHPMITRAKASIFKTRHPANLGMLGSSGLLFALLASTEPKGFK 183
                  +E P         P+    +  +   R+P+   +L S           EP+  K
Sbjct: 786  ----EEVEHPTQ-GEEQHQPLRRSERPRVESRRYPSTEYVLISD--------DREPESLK 845

Query: 184  SAAKNP---AWVAAMDEEIRALQQTDTWTLVPRSANTNIVGSKWMFCIKYLPDGFVERFK 243
                +P     + AM EE+ +LQ+  T+ LV        +  KW+F +K   D  + R+K
Sbjct: 846  EVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYK 905

Query: 244  ARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLQQLDVKNVFLNGTLIER 303
            ARLV KG+ Q  G+D+ + FSPVVK T++R +LS+A +    ++QLDVK  FL+G L E 
Sbjct: 906  ARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEE 965

Query: 304  VHMEQPPGYVDPRFPMHVCLLKKALYGLKQASRAWFQRFSSFLLTLGFSCSRADTSL-FV 363
            ++MEQP G+        VC L K+LYGLKQA R W+ +F SF+ +  +  + +D  + F 
Sbjct: 966  IYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFK 1025

Query: 364  FHQQSNLIYLLLYVDDIIVIDNNSSLINSFTRKLHSEFATKDLGSLSYFFGLE--ASPTP 423
               ++N I LLLYVDD++++  +  LI      L   F  KDLG      G++     T 
Sbjct: 1026 RFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTS 1085

Query: 424  DGLFISPLKYARDILTRAQLLDSKPVHTIMVVSQHL-------TVDGSPFSDPTLYRSLV 483
              L++S  KY   +L R  + ++KPV T +     L       TV+         Y S V
Sbjct: 1086 RKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAV 1145

Query: 484  GALQY-LTITHPDIAYTVNSVSQFLHAPTADHFLADKRILRYVKGTLHFGLTFRPSTVPS 543
            G+L Y +  T PDIA+ V  VS+FL  P  +H+ A K ILRY++GT    L F  S    
Sbjct: 1146 GSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGS--DP 1205

Query: 544  TLVAYSDADWAGCPDTRRSTSGYSIYLGNNLISWSAKKQPTVSRSSCESEYRALATTVAE 603
             L  Y+DAD AG  D R+S++GY        ISW +K Q  V+ S+ E+EY A   T  E
Sbjct: 1206 ILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKE 1265

Query: 604  LLWVTHLLHDLKVPISQQPLLLCDNKSAIFLSSNPVSHKRAKHVELDYHFLRELVIAGKL 663
            ++W+   L +L +   ++ ++ CD++SAI LS N + H R KH+++ YH++RE+V    L
Sbjct: 1266 MIWLKRFLQELGLH-QKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESL 1325

Query: 664  RTQYVPSHLQVADIFTKSISRPLFEFFRSKLHVRSN 682
            +   + ++   AD+ TK + R  FE  +  + + SN
Sbjct: 1326 KVLKISTNENPADMLTKVVPRNKFELCKELVGMHSN 1328

[Close]

BLAST of CmaCh11G012610 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 6.5e-59
Identity = 116/226 (51.33%), Postives = 157/226 (69.47%), Query Frame = 0


Query: 363 IYLLLYVDDIIVIDNNSSLINSFTRKLHSEFATKDLGSLSYFFGLEASPTPDGLFISPLK 422
           +YLLLYVDDI++  ++++L+N    +L S F+ KDLG + YF G++    P GLF+S  K
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60

Query: 423 YARDILTRAQLLDSKPVHTIMVVSQHLTVDGSPFSDPTLYRSLVGALQYLTITHPDIAYT 482
           YA  IL  A +LD KP+ T + +  + +V  + + DP+ +RS+VGALQYLT+T PDI+Y 
Sbjct: 61  YAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYA 120

Query: 483 VNSVSQFLHAPTADHFLADKRILRYVKGTLHFGLTFRPSTVPSTLVAYSDADWAGCPDTR 542
           VN V Q +H PT   F   KR+LRYVKGT+  GL    ++    + A+ D+DWAGC  TR
Sbjct: 121 VNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNS-KLNVQAFCDSDWAGCTSTR 180

Query: 543 RSTSGYSIYLGNNLISWSAKKQPTVSRSSCESEYRALATTVAELLW 589
           RST+G+  +LG N+ISWSAK+QPTVSRSS E+EYRALA T AEL W
Sbjct: 181 RSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of CmaCh11G012610 vs. ExPASy TrEMBL
Match: A0A438EBA0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2065 PE=4 SV=1)

HSP 1 Score: 1200.3 bits (3104), Expect = 0.0e+00
Identity = 601/691 (86.98%), Postives = 634/691 (91.75%), Query Frame = 0


Query: 1    MPNKLSPRSIPCIFLGYSPVHKEFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLST 60
            MPNKLSPRSIPCIFLGYSP HK FRCLDP T++LYIT HAQFDETHFP +PSSQAQPLS+
Sbjct: 699  MPNKLSPRSIPCIFLGYSPSHKGFRCLDPTTSRLYITRHAQFDETHFPTVPSSQAQPLSS 758

Query: 61   IPISNFLEPHLHHIDSSPPTTSSP--HIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPP 120
            + ISNFLEP LHHID SPP+  SP  HIP+S+SSPC+ICSDLVDESVQVDTSLAGS+LPP
Sbjct: 759  LHISNFLEPRLHHIDPSPPSPPSPSSHIPRSNSSPCNICSDLVDESVQVDTSLAGSSLPP 818

Query: 121  STSNSTSIEPPVD-FSSLGTHPMITRAKASIFKTRHPANLGMLGSSGLLFALLASTEPKG 180
              S+  SIE   D  SSLG+HPMITRAKA IFKTRHPANLG+LGSSGLL ALLASTEPKG
Sbjct: 819  LASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSSGLLSALLASTEPKG 878

Query: 181  FKSAAKNPAWVAAMDEEIRALQQTDTWTLVPRSANTNIVGSKWMFCIKYLPDGFVERFKA 240
            FKSAAKNPAW+AAMDEE++ALQQ  TW LV R  NTNIVGSKW+F  KY PDG VER KA
Sbjct: 879  FKSAAKNPAWLAAMDEEVQALQQNGTWILVHRPVNTNIVGSKWVFRTKYFPDGSVERLKA 938

Query: 241  RLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLQQLDVKNVFLNGTLIERV 300
            RLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLS+AVTNKWPL+QLDV N FLNGTL E V
Sbjct: 939  RLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSLAVTNKWPLRQLDVNNAFLNGTLTEHV 998

Query: 301  HMEQPPGYVDPRFPMHVCLLKKALYGLKQASRAWFQRFSSFLLTLGFSCSRADTSLFVFH 360
            +MEQPPGY+DPRFP HVCLLKKALYGLKQA RAWFQRFSSF LTLGFSCSRADTSLFVFH
Sbjct: 999  YMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFFLTLGFSCSRADTSLFVFH 1058

Query: 361  QQSNLIYLLLYVDDIIVIDNNSSLINSFTRKLHSEFATKDLGSLSYFFGLEASPTPDGLF 420
            QQS+LIYLLLYVDDIIV  NN SL++SFTRKLHS+FATKDLGSLSYF GLEASPTPDGLF
Sbjct: 1059 QQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSKFATKDLGSLSYFLGLEASPTPDGLF 1118

Query: 421  ISPLKYARDILTRAQLLDSKPVHTIMVVSQHLTVDGSPFSDPTLYRSLVGALQYLTITHP 480
            IS LKYARDILTRA LLDSKPVHT MVVSQHLTV GSPFS+PTLYRSLVGALQYLTIT P
Sbjct: 1119 ISQLKYARDILTRAHLLDSKPVHTPMVVSQHLTVAGSPFSNPTLYRSLVGALQYLTITRP 1178

Query: 481  DIAYTVNSVSQFLHAPTADHFLADKRILRYVKGTLHFGLTFRPSTVPSTLVAYSDADWAG 540
            DIA+ VNSVSQFLHA T DHFLA KRILRYVKGTLHFGLTFRPST+PS LVAYSDADWAG
Sbjct: 1179 DIAHAVNSVSQFLHALTIDHFLAVKRILRYVKGTLHFGLTFRPSTIPSALVAYSDADWAG 1238

Query: 541  CPDTRRSTSGYSIYLGNNLISWSAKKQPTVSRSSCESEYRALATTVAELLWVTHLLHDLK 600
            CPDTRRSTSGYSIYLGNNL+SWSAKKQPTVSRSSCESEYRALA TVAELLW+THLLHDLK
Sbjct: 1239 CPDTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALAMTVAELLWLTHLLHDLK 1298

Query: 601  VPISQQPLLLCDNKSAIFLSSNPVSHKRAKHVELDYHFLRELVIAGKLRTQYVPSHLQVA 660
            VPI QQPLLLCDNKSAIFLSSNPVSHKRAKHVELDYHFLRELV+AGKLRTQYVPSHLQVA
Sbjct: 1299 VPIPQQPLLLCDNKSAIFLSSNPVSHKRAKHVELDYHFLRELVVAGKLRTQYVPSHLQVA 1358

Query: 661  DIFTKSISRPLFEFFRSKLHVRSNPTLSLRG 689
            DIFTKS+SRPLFEFFRSKLH+RSNPTLSLRG
Sbjct: 1359 DIFTKSVSRPLFEFFRSKLHIRSNPTLSLRG 1389

[Close]

BLAST of CmaCh11G012610 vs. ExPASy TrEMBL
Match: A0A438E275 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_3495 PE=3 SV=1)

HSP 1 Score: 1153.7 bits (2983), Expect = 0.0e+00
Identity = 579/668 (86.68%), Postives = 610/668 (91.32%), Query Frame = 0


Query: 1    MPNKLSPRSIPCIFLGYSPVHKEFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLST 60
            M NKLSPRSIPCIFLGYSP HK FRCLDP T++LYIT HAQFDETHFP +PSSQAQPLS+
Sbjct: 608  MSNKLSPRSIPCIFLGYSPSHKGFRCLDPTTSRLYITRHAQFDETHFPTVPSSQAQPLSS 667

Query: 61   IPISNFLEPHLHHIDSSPPTTSSP--HIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPP 120
            + ISNFLEP LHHID SPP+  SP  HIP+S+SSPC+ICSDLVDESVQVDTSLAG +LPP
Sbjct: 668  LHISNFLEPRLHHIDPSPPSPPSPSSHIPRSNSSPCNICSDLVDESVQVDTSLAGCSLPP 727

Query: 121  STSNSTSIEPPVD-FSSLGTHPMITRAKASIFKTRHPANLGMLGSSGLLFALLASTEPKG 180
              S+  SIE   D  SSLG+HPMITRAKA IFKTRHPANLG+LGSSGLLFALLASTEPKG
Sbjct: 728  LASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSSGLLFALLASTEPKG 787

Query: 181  FKSAAKNPAWVAAMDEEIRALQQTDTWTLVPRSANTNIVGSKWMFCIKYLPDGFVERFKA 240
            FKSAAKNPAW+AAMDEE++ALQQ  TW LVPR  NTNIVGSKW+F  KYLPDG VER KA
Sbjct: 788  FKSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNIVGSKWVFRTKYLPDGSVERLKA 847

Query: 241  RLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLQQLDVKNVFLNGTLIERV 300
            RLVAKGYT VPGLDYTD FSPVVKATTVRVVLS+AVTNKWPL+QLDVKN FLNGTL E V
Sbjct: 848  RLVAKGYTHVPGLDYTDIFSPVVKATTVRVVLSLAVTNKWPLRQLDVKNAFLNGTLTEHV 907

Query: 301  HMEQPPGYVDPRFPMHVCLLKKALYGLKQASRAWFQRFSSFLLTLGFSCSRADTSLFVFH 360
            +MEQPPGY+D RFP HVCLLKKALYGLKQA RAWFQRFSSFLLTLGFSCSRADTSLFVFH
Sbjct: 908  YMEQPPGYIDHRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSLFVFH 967

Query: 361  QQSNLIYLLLYVDDIIVIDNNSSLINSFTRKLHSEFATKDLGSLSYFFGLEASPTPDGLF 420
            QQS+LIYLLLYVDDIIV  NN SL++SFTRKLHSEFATKDLGSL+YF GLEASPTPDGLF
Sbjct: 968  QQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSEFATKDLGSLNYFLGLEASPTPDGLF 1027

Query: 421  ISPLKYARDILTRAQLLDSKPVHTIMVVSQHLTVDGSPFSDPTLYRSLVGALQYLTITHP 480
            IS LKYARDILTRAQLLDSKPVHT MVVSQHLTV GSPFS+PTLYRSLVGALQYLTIT P
Sbjct: 1028 ISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTVAGSPFSNPTLYRSLVGALQYLTITRP 1087

Query: 481  DIAYTVNSVSQFLHAPTADHFLADKRILRYVKGTLHFGLTFRPSTVPSTLVAYSDADWAG 540
            DIA+ VNSVSQFLHAPT DHFLA KRILRYVKGTLHFGLTFRPST+PS LVAYSDADWAG
Sbjct: 1088 DIAHAVNSVSQFLHAPTIDHFLAVKRILRYVKGTLHFGLTFRPSTIPSALVAYSDADWAG 1147

Query: 541  CPDTRRSTSGYSIYLGNNLISWSAKKQPTVSRSSCESEYRALATTVAELLWVTHLLHDLK 600
            CPDTRRSTSGYSIYLGNNL+SWSAKKQPTVSRSSCESEYRALA T AELLW+THLLHDLK
Sbjct: 1148 CPDTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALAMTAAELLWLTHLLHDLK 1207

Query: 601  VPISQQPLLLCDNKSAIFLSSNPVSHKRAKHVELDYHFLRELVIAGKLRTQYVPSHLQVA 660
            VPI QQPLLLCDNKSAIF SSNPVSHKRAKHVELDYHFLRELV+AGKLRTQYVPSHLQVA
Sbjct: 1208 VPIPQQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLRELVVAGKLRTQYVPSHLQVA 1267

Query: 661  DIFTKSIS 666
            DIFTKS S
Sbjct: 1268 DIFTKSWS 1275

[Close]

BLAST of CmaCh11G012610 vs. ExPASy TrEMBL
Match: A0A2N9EEM3 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1094 PE=4 SV=1)

HSP 1 Score: 1096.6 bits (2835), Expect = 0.0e+00
Identity = 553/703 (78.66%), Postives = 598/703 (85.06%), Query Frame = 0


Query: 1    MPNKLSPRSIPCIFLGYSPVHKEFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLST 60
            MPNKLSPRSIPCIFLGYSP HK FRCLDP T+++YIT HAQFDETHFP + +SQAQP+S+
Sbjct: 448  MPNKLSPRSIPCIFLGYSPSHKGFRCLDPTTSRIYITRHAQFDETHFPFLNTSQAQPISS 507

Query: 61   IPISNFLEPHLHHIDSSP--PTTSSPHIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPP 120
            +  SNFLEP L   D  P  P   SPHIPQS S+PCDIC+D VDES+QV+ SL G +LPP
Sbjct: 508  LQFSNFLEPSLPPTDMPPSSPAPHSPHIPQSGSNPCDICTDPVDESLQVNDSLTGPSLPP 567

Query: 121  STSNSTSIE--------PPVDFSSLGTHPMITRAKASIFKTRHPANLGMLGSSGLLFALL 180
            S  +  S+E         PV  + + +HPM+TRAKA IFKTRHPANL +LGSSGLL ALL
Sbjct: 568  SDPSPASLELPTELPTPAPVAATPMPSHPMLTRAKAGIFKTRHPANLAILGSSGLLSALL 627

Query: 181  ASTEPKGFKSAAKNPAWVAAMDEEIRALQQTDTWTLVPRSANTNIVGSKWMFCIKYLPDG 240
            ASTEPKGFKSAAKNPAW+AAMDEEI+ALQ   TW LVPR ANTNIVGSKW+F  KYLPDG
Sbjct: 628  ASTEPKGFKSAAKNPAWLAAMDEEIQALQTNRTWILVPRPANTNIVGSKWVFRTKYLPDG 687

Query: 241  FVERFKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLQQLDVKNVFLN 300
             +ER KARLVAKGYTQVPGLDYTDTFSPV+KATTVRVVLS+AVTNKWPL+QLDVKN FLN
Sbjct: 688  SIERLKARLVAKGYTQVPGLDYTDTFSPVIKATTVRVVLSLAVTNKWPLRQLDVKNAFLN 747

Query: 301  GTLIERVHMEQPPGYVDPRFPMHVCLLKKALYGLKQASRAWFQRFSSFLLTLGFSCSRAD 360
            G+L E V+MEQPPGY+DPRFP HVC LKKALYGLKQA RAWFQRFSSFLLTLGFSCSRAD
Sbjct: 748  GSLTEHVYMEQPPGYIDPRFPHHVCHLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRAD 807

Query: 361  TSLFVFHQQSNLIYLLLYVDDIIVIDNNSSLINSFTRKLHSEFATKDLGSLSYFFGLEAS 420
            TSLFVFHQQS +IYLLLYVDDII+  NNSSL++SFT KLHSEFATKDLGSLSYF GLEA 
Sbjct: 808  TSLFVFHQQSGIIYLLLYVDDIIITGNNSSLLDSFTHKLHSEFATKDLGSLSYFLGLEAL 867

Query: 421  PTPDGLFISPLKYARDILTRAQLLDSKPVHTIMVVSQHLTVDGSPFSDPTLYRSLVGALQ 480
            PTPDGLF+S LKYARDILTRAQLLDSKPVHT M                           
Sbjct: 868  PTPDGLFLSQLKYARDILTRAQLLDSKPVHTPM--------------------------- 927

Query: 481  YLTITHPDIAYTVNSVSQFLHAPTADHFLADKRILRYVKGTLHFGLTFRPSTVPSTLVAY 540
            YLTIT PDIA+ VNSVSQF+HAPTADHFLA KRILRYVKGTLHFGLTFRPS  P TLVAY
Sbjct: 928  YLTITRPDIAHAVNSVSQFMHAPTADHFLAVKRILRYVKGTLHFGLTFRPSAAPGTLVAY 987

Query: 541  SDADWAGCPDTRRSTSGYSIYLGNNLISWSAKKQPTVSRSSCESEYRALATTVAELLWVT 600
            SDADWAGCPDTRRSTSGYSIYLG+NL+SWSAKKQPTVSRSSCESEYRALA T AELLW+T
Sbjct: 988  SDADWAGCPDTRRSTSGYSIYLGDNLVSWSAKKQPTVSRSSCESEYRALAMTAAELLWLT 1047

Query: 601  HLLHDLKVPISQQPLLLCDNKSAIFLSSNPVSHKRAKHVELDYHFLRELVIAGKLRTQYV 660
            HLLHDLKVP+ QQPLLLCDNKSAIFLSSNPVSHKRAKHVELDYHFLRELV+AGKLRTQYV
Sbjct: 1048 HLLHDLKVPLPQQPLLLCDNKSAIFLSSNPVSHKRAKHVELDYHFLRELVVAGKLRTQYV 1107

Query: 661  PSHLQVADIFTKSISRPLFEFFRSKLHVRSNPTLSLRGGVKDS 694
            PSHLQVADIFTKS+SR LFEFFRSKLHV SNPTLSLRGGV+D+
Sbjct: 1108 PSHLQVADIFTKSVSRSLFEFFRSKLHVHSNPTLSLRGGVEDT 1123

[Close]

BLAST of CmaCh11G012610 vs. ExPASy TrEMBL
Match: A0A438IHQ8 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2593 PE=4 SV=1)

HSP 1 Score: 1078.5 bits (2788), Expect = 0.0e+00
Identity = 557/697 (79.91%), Postives = 591/697 (84.79%), Query Frame = 0


Query: 1    MPNKLSPRSIPCIFLGYSPVHKEFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLST 60
            MPNKLSPRSIPCIFLGYSP HK FRCLDP T++LYIT HAQFDETHFP IPSSQAQPLS+
Sbjct: 422  MPNKLSPRSIPCIFLGYSPSHKGFRCLDPTTSRLYITRHAQFDETHFPTIPSSQAQPLSS 481

Query: 61   IPISNFLEPHLHHIDSSP--PTTSSPHIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPP 120
            + ISNFLEP LHHID SP  PT+ S HIP+S+SSPC+ICSDLVDESVQVDTSLAGS+ PP
Sbjct: 482  LHISNFLEPRLHHIDPSPPSPTSHSSHIPRSNSSPCNICSDLVDESVQVDTSLAGSSFPP 541

Query: 121  STSNSTSIEPPVD-FSSLGTHPMITRAKASIFKTRHPANLGMLGSSGLLFALLASTEPKG 180
              S+  SIE   D  SSLG+HPMITRAKA IFKTRHPANLG+LGS GLL  LL STEPKG
Sbjct: 542  LASSPHSIELAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSFGLLSTLLTSTEPKG 601

Query: 181  FKSAAKNPAWVAAMDEEIRALQQTDTWTLVPRSANTNIVGSKWMFCIKYLPDGFVERFKA 240
            FKSAAKNP W+A MDEE++ALQQ                                     
Sbjct: 602  FKSAAKNPVWLATMDEEVQALQQ------------------------------------- 661

Query: 241  RLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLQQLDVKNVFLNGTLIERV 300
                 GYTQVPGLDYTDTFS VVKATTVRVVLS+AVTNKWPL+Q DVKN FLNGTL E V
Sbjct: 662  ----NGYTQVPGLDYTDTFSLVVKATTVRVVLSLAVTNKWPLRQFDVKNAFLNGTLTEHV 721

Query: 301  HMEQPPGYVDPRFPMHVCLLKKALYGLKQASRAWFQRFSSFLLTLGFSCSRADTSLFVFH 360
            +MEQP GY+D RFP HVCLLKKALYGLKQA RAWFQRFSSFLLTLGFS SRA  SLFVFH
Sbjct: 722  YMEQPLGYIDSRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSSSRAYISLFVFH 781

Query: 361  QQSNLIYLLLYVDDIIVIDNNSSLINSFTRKLHSEFATKDLGSLSYFFGLEASPTPDGLF 420
            QQS+LIYLLLYV DIIV  NN SL+++FTRKLHSEFATKDLGSLSYF GLEASPTPDGLF
Sbjct: 782  QQSSLIYLLLYVYDIIVTGNNPSLLDNFTRKLHSEFATKDLGSLSYFLGLEASPTPDGLF 841

Query: 421  ISPLKYARDILTRAQLLDSKPVHTIMVVSQHLTVDGSPFSDPTLYRSLVGALQYLTITHP 480
            IS LKYARDILTRAQLLDSKPVHT MVVSQHLT+  SPFS+PT YRSLVGALQYLTIT P
Sbjct: 842  ISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTIASSPFSNPTFYRSLVGALQYLTITRP 901

Query: 481  DIAYTVNSVSQFLHAPTADHFLADKRILRYVKGTLHFGLTFRPSTVPSTLVAYSDADWAG 540
            DIA+ VNSVSQFLHAPT D+FLA KRILRYVKGTLHFGLTFRPST+PS LVAYSDADWAG
Sbjct: 902  DIAHAVNSVSQFLHAPTIDNFLAVKRILRYVKGTLHFGLTFRPSTIPSALVAYSDADWAG 961

Query: 541  CPDTRRSTSGYSIYLGNNLISWSAKKQPTVSRSSCESEYRALATTVAELLWVTHLLHDLK 600
            CPDTRRSTS YSIYLGNNL+SWSAKKQPTVSRSSCESEYRALA T AELLW+THLLHDLK
Sbjct: 962  CPDTRRSTSSYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALAMTAAELLWLTHLLHDLK 1021

Query: 601  VPISQQPLLLCDNKSAIFLSSNPVSHKRAKHVELDYHFLRELVIAGKLRTQYVPSHLQVA 660
            VPI QQ LLLCDNKSAIFLSSNPVSHKRAKHVELDYHFLRELV+AGKL TQYVPSHLQVA
Sbjct: 1022 VPIPQQSLLLCDNKSAIFLSSNPVSHKRAKHVELDYHFLRELVVAGKLCTQYVPSHLQVA 1077

Query: 661  DIFTKSISRPLFEFFRSKLHVRSNPTLS-LRGGVKDS 694
            DIFTKS+SRPLFEFFRSKLH+RSNPTLS L GGVKD+
Sbjct: 1082 DIFTKSVSRPLFEFFRSKLHIRSNPTLSLLEGGVKDT 1077

[Close]

BLAST of CmaCh11G012610 vs. ExPASy TrEMBL
Match: A0A2N9I601 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49318 PE=4 SV=1)

HSP 1 Score: 1073.9 bits (2776), Expect = 2.6e-310
Identity = 537/668 (80.39%), Postives = 582/668 (87.13%), Query Frame = 0


Query: 1    MPNKLSPRSIPCIFLGYSPVHKEFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLST 60
            MPNKLSPRSIPCIFLGYSP HK FRCLDP T+++YIT HAQFDETHFP + +SQAQP+S+
Sbjct: 461  MPNKLSPRSIPCIFLGYSPSHKGFRCLDPTTSRIYITRHAQFDETHFPFLNTSQAQPISS 520

Query: 61   IPISNFLEPHLHHIDSSP--PTTSSPHIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPP 120
            +  SNFLEP L   D  P  P   SPHIPQS S+PCDIC+D VDES+QV+ SL G +LPP
Sbjct: 521  LQFSNFLEPSLPPTDMPPSSPAPHSPHIPQSGSNPCDICTDPVDESLQVNDSLTGPSLPP 580

Query: 121  STSNSTSIE--------PPVDFSSLGTHPMITRAKASIFKTRHPANLGMLGSSGLLFALL 180
            S  +  S+E         PV  + + +HPM+TRAKA IFKTRHPANL +LG SGLL ALL
Sbjct: 581  SDPSPASLELPTELPTPAPVAATPMPSHPMLTRAKAGIFKTRHPANLAILGPSGLLSALL 640

Query: 181  ASTEPKGFKSAAKNPAWVAAMDEEIRALQQTDTWTLVPRSANTNIVGSKWMFCIKYLPDG 240
            ASTEPKGFKSAAKNPAW+AAMDEEI+ALQ   TW LVPR ANTNIVGSKW+F  KYLPDG
Sbjct: 641  ASTEPKGFKSAAKNPAWLAAMDEEIQALQTNRTWILVPRPANTNIVGSKWVFRTKYLPDG 700

Query: 241  FVERFKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLQQLDVKNVFLN 300
             +ER KARLVAKGYTQVPGLDYTDTFSPV+KATTVRVVLS+AVTNKWPL+QLDVKN FLN
Sbjct: 701  SIERLKARLVAKGYTQVPGLDYTDTFSPVIKATTVRVVLSLAVTNKWPLRQLDVKNAFLN 760

Query: 301  GTLIERVHMEQPPGYVDPRFPMHVCLLKKALYGLKQASRAWFQRFSSFLLTLGFSCSRAD 360
            G+L E V+MEQPPGY+DPRFP HVC LKKALYGLKQA RAWFQRFSSFLLTLGFSCSRAD
Sbjct: 761  GSLTEHVYMEQPPGYIDPRFPHHVCHLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRAD 820

Query: 361  TSLFVFHQQSNLIYLLLYVDDIIVIDNNSSLINSFTRKLHSEFATKDLGSLSYFFGLEAS 420
            TSLFVFHQQS +IYLLLYVDDII+  NNSSL++SFT KLHSEFATKDLGSLSYF GLEA 
Sbjct: 821  TSLFVFHQQSGIIYLLLYVDDIIITGNNSSLLDSFTHKLHSEFATKDLGSLSYFLGLEAL 880

Query: 421  PTPDGLFISPLKYARDILTRAQLLDSKPVHTIMVVSQHLTVDGSPFSDPTLYRSLVGALQ 480
            PTPDGLF+S LKYARDILTRAQLLDSKPVHT MVVSQHL+ DG  F DPTLYRSLVGALQ
Sbjct: 881  PTPDGLFLSQLKYARDILTRAQLLDSKPVHTPMVVSQHLSADGPLFPDPTLYRSLVGALQ 940

Query: 481  YLTITHPDIAYTVNSVSQFLHAPTADHFLADKRILRYVKGTLHFGLTFRPSTVPSTLVAY 540
            YLTIT PDIA+ VNSVSQF+HAPTADHFLA KRILRYVKGTLHFGLTFRPS  P TLVAY
Sbjct: 941  YLTITRPDIAHAVNSVSQFMHAPTADHFLAVKRILRYVKGTLHFGLTFRPSAAPGTLVAY 1000

Query: 541  SDADWAGCPDTRRSTSGYSIYLGNNLISWSAKKQPTVSRSSCESEYRALATTVAELLWVT 600
            SDADWAGCPDTRRSTSGYSIYLG+NL+SWSAKKQPTVSRSSCESEYRALA T AELLW+T
Sbjct: 1001 SDADWAGCPDTRRSTSGYSIYLGDNLVSWSAKKQPTVSRSSCESEYRALAMTAAELLWLT 1060

Query: 601  HLLHDLKVPISQQPLLLCDNKSAIFLSSNPVSHKRAKHVELDYHFLRELVIAGKLRTQYV 659
            HLLHDLKVP+ QQPLLLCDNKSAIFLSSNPVSHKRAKHVELDYHFLRELV+AGKLRTQY 
Sbjct: 1061 HLLHDLKVPLPQQPLLLCDNKSAIFLSSNPVSHKRAKHVELDYHFLRELVVAGKLRTQY- 1120

[Close]

BLAST of CmaCh11G012610 vs. NCBI nr
Match: RVW45095.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 1200.3 bits (3104), Expect = 0.0e+00
Identity = 601/691 (86.98%), Postives = 634/691 (91.75%), Query Frame = 0


Query: 1    MPNKLSPRSIPCIFLGYSPVHKEFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLST 60
            MPNKLSPRSIPCIFLGYSP HK FRCLDP T++LYIT HAQFDETHFP +PSSQAQPLS+
Sbjct: 699  MPNKLSPRSIPCIFLGYSPSHKGFRCLDPTTSRLYITRHAQFDETHFPTVPSSQAQPLSS 758

Query: 61   IPISNFLEPHLHHIDSSPPTTSSP--HIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPP 120
            + ISNFLEP LHHID SPP+  SP  HIP+S+SSPC+ICSDLVDESVQVDTSLAGS+LPP
Sbjct: 759  LHISNFLEPRLHHIDPSPPSPPSPSSHIPRSNSSPCNICSDLVDESVQVDTSLAGSSLPP 818

Query: 121  STSNSTSIEPPVD-FSSLGTHPMITRAKASIFKTRHPANLGMLGSSGLLFALLASTEPKG 180
              S+  SIE   D  SSLG+HPMITRAKA IFKTRHPANLG+LGSSGLL ALLASTEPKG
Sbjct: 819  LASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSSGLLSALLASTEPKG 878

Query: 181  FKSAAKNPAWVAAMDEEIRALQQTDTWTLVPRSANTNIVGSKWMFCIKYLPDGFVERFKA 240
            FKSAAKNPAW+AAMDEE++ALQQ  TW LV R  NTNIVGSKW+F  KY PDG VER KA
Sbjct: 879  FKSAAKNPAWLAAMDEEVQALQQNGTWILVHRPVNTNIVGSKWVFRTKYFPDGSVERLKA 938

Query: 241  RLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLQQLDVKNVFLNGTLIERV 300
            RLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLS+AVTNKWPL+QLDV N FLNGTL E V
Sbjct: 939  RLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSLAVTNKWPLRQLDVNNAFLNGTLTEHV 998

Query: 301  HMEQPPGYVDPRFPMHVCLLKKALYGLKQASRAWFQRFSSFLLTLGFSCSRADTSLFVFH 360
            +MEQPPGY+DPRFP HVCLLKKALYGLKQA RAWFQRFSSF LTLGFSCSRADTSLFVFH
Sbjct: 999  YMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFFLTLGFSCSRADTSLFVFH 1058

Query: 361  QQSNLIYLLLYVDDIIVIDNNSSLINSFTRKLHSEFATKDLGSLSYFFGLEASPTPDGLF 420
            QQS+LIYLLLYVDDIIV  NN SL++SFTRKLHS+FATKDLGSLSYF GLEASPTPDGLF
Sbjct: 1059 QQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSKFATKDLGSLSYFLGLEASPTPDGLF 1118

Query: 421  ISPLKYARDILTRAQLLDSKPVHTIMVVSQHLTVDGSPFSDPTLYRSLVGALQYLTITHP 480
            IS LKYARDILTRA LLDSKPVHT MVVSQHLTV GSPFS+PTLYRSLVGALQYLTIT P
Sbjct: 1119 ISQLKYARDILTRAHLLDSKPVHTPMVVSQHLTVAGSPFSNPTLYRSLVGALQYLTITRP 1178

Query: 481  DIAYTVNSVSQFLHAPTADHFLADKRILRYVKGTLHFGLTFRPSTVPSTLVAYSDADWAG 540
            DIA+ VNSVSQFLHA T DHFLA KRILRYVKGTLHFGLTFRPST+PS LVAYSDADWAG
Sbjct: 1179 DIAHAVNSVSQFLHALTIDHFLAVKRILRYVKGTLHFGLTFRPSTIPSALVAYSDADWAG 1238

Query: 541  CPDTRRSTSGYSIYLGNNLISWSAKKQPTVSRSSCESEYRALATTVAELLWVTHLLHDLK 600
            CPDTRRSTSGYSIYLGNNL+SWSAKKQPTVSRSSCESEYRALA TVAELLW+THLLHDLK
Sbjct: 1239 CPDTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALAMTVAELLWLTHLLHDLK 1298

Query: 601  VPISQQPLLLCDNKSAIFLSSNPVSHKRAKHVELDYHFLRELVIAGKLRTQYVPSHLQVA 660
            VPI QQPLLLCDNKSAIFLSSNPVSHKRAKHVELDYHFLRELV+AGKLRTQYVPSHLQVA
Sbjct: 1299 VPIPQQPLLLCDNKSAIFLSSNPVSHKRAKHVELDYHFLRELVVAGKLRTQYVPSHLQVA 1358

Query: 661  DIFTKSISRPLFEFFRSKLHVRSNPTLSLRG 689
            DIFTKS+SRPLFEFFRSKLH+RSNPTLSLRG
Sbjct: 1359 DIFTKSVSRPLFEFFRSKLHIRSNPTLSLRG 1389

[Close]

BLAST of CmaCh11G012610 vs. NCBI nr
Match: RVW41798.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 1153.7 bits (2983), Expect = 0.0e+00
Identity = 579/668 (86.68%), Postives = 610/668 (91.32%), Query Frame = 0


Query: 1    MPNKLSPRSIPCIFLGYSPVHKEFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLST 60
            M NKLSPRSIPCIFLGYSP HK FRCLDP T++LYIT HAQFDETHFP +PSSQAQPLS+
Sbjct: 608  MSNKLSPRSIPCIFLGYSPSHKGFRCLDPTTSRLYITRHAQFDETHFPTVPSSQAQPLSS 667

Query: 61   IPISNFLEPHLHHIDSSPPTTSSP--HIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPP 120
            + ISNFLEP LHHID SPP+  SP  HIP+S+SSPC+ICSDLVDESVQVDTSLAG +LPP
Sbjct: 668  LHISNFLEPRLHHIDPSPPSPPSPSSHIPRSNSSPCNICSDLVDESVQVDTSLAGCSLPP 727

Query: 121  STSNSTSIEPPVD-FSSLGTHPMITRAKASIFKTRHPANLGMLGSSGLLFALLASTEPKG 180
              S+  SIE   D  SSLG+HPMITRAKA IFKTRHPANLG+LGSSGLLFALLASTEPKG
Sbjct: 728  LASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSSGLLFALLASTEPKG 787

Query: 181  FKSAAKNPAWVAAMDEEIRALQQTDTWTLVPRSANTNIVGSKWMFCIKYLPDGFVERFKA 240
            FKSAAKNPAW+AAMDEE++ALQQ  TW LVPR  NTNIVGSKW+F  KYLPDG VER KA
Sbjct: 788  FKSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNIVGSKWVFRTKYLPDGSVERLKA 847

Query: 241  RLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLQQLDVKNVFLNGTLIERV 300
            RLVAKGYT VPGLDYTD FSPVVKATTVRVVLS+AVTNKWPL+QLDVKN FLNGTL E V
Sbjct: 848  RLVAKGYTHVPGLDYTDIFSPVVKATTVRVVLSLAVTNKWPLRQLDVKNAFLNGTLTEHV 907

Query: 301  HMEQPPGYVDPRFPMHVCLLKKALYGLKQASRAWFQRFSSFLLTLGFSCSRADTSLFVFH 360
            +MEQPPGY+D RFP HVCLLKKALYGLKQA RAWFQRFSSFLLTLGFSCSRADTSLFVFH
Sbjct: 908  YMEQPPGYIDHRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSLFVFH 967

Query: 361  QQSNLIYLLLYVDDIIVIDNNSSLINSFTRKLHSEFATKDLGSLSYFFGLEASPTPDGLF 420
            QQS+LIYLLLYVDDIIV  NN SL++SFTRKLHSEFATKDLGSL+YF GLEASPTPDGLF
Sbjct: 968  QQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSEFATKDLGSLNYFLGLEASPTPDGLF 1027

Query: 421  ISPLKYARDILTRAQLLDSKPVHTIMVVSQHLTVDGSPFSDPTLYRSLVGALQYLTITHP 480
            IS LKYARDILTRAQLLDSKPVHT MVVSQHLTV GSPFS+PTLYRSLVGALQYLTIT P
Sbjct: 1028 ISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTVAGSPFSNPTLYRSLVGALQYLTITRP 1087

Query: 481  DIAYTVNSVSQFLHAPTADHFLADKRILRYVKGTLHFGLTFRPSTVPSTLVAYSDADWAG 540
            DIA+ VNSVSQFLHAPT DHFLA KRILRYVKGTLHFGLTFRPST+PS LVAYSDADWAG
Sbjct: 1088 DIAHAVNSVSQFLHAPTIDHFLAVKRILRYVKGTLHFGLTFRPSTIPSALVAYSDADWAG 1147

Query: 541  CPDTRRSTSGYSIYLGNNLISWSAKKQPTVSRSSCESEYRALATTVAELLWVTHLLHDLK 600
            CPDTRRSTSGYSIYLGNNL+SWSAKKQPTVSRSSCESEYRALA T AELLW+THLLHDLK
Sbjct: 1148 CPDTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALAMTAAELLWLTHLLHDLK 1207

Query: 601  VPISQQPLLLCDNKSAIFLSSNPVSHKRAKHVELDYHFLRELVIAGKLRTQYVPSHLQVA 660
            VPI QQPLLLCDNKSAIF SSNPVSHKRAKHVELDYHFLRELV+AGKLRTQYVPSHLQVA
Sbjct: 1208 VPIPQQPLLLCDNKSAIFFSSNPVSHKRAKHVELDYHFLRELVVAGKLRTQYVPSHLQVA 1267

Query: 661  DIFTKSIS 666
            DIFTKS S
Sbjct: 1268 DIFTKSWS 1275

[Close]

BLAST of CmaCh11G012610 vs. NCBI nr
Match: RVW96109.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 1078.5 bits (2788), Expect = 0.0e+00
Identity = 557/697 (79.91%), Postives = 591/697 (84.79%), Query Frame = 0


Query: 1    MPNKLSPRSIPCIFLGYSPVHKEFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLST 60
            MPNKLSPRSIPCIFLGYSP HK FRCLDP T++LYIT HAQFDETHFP IPSSQAQPLS+
Sbjct: 422  MPNKLSPRSIPCIFLGYSPSHKGFRCLDPTTSRLYITRHAQFDETHFPTIPSSQAQPLSS 481

Query: 61   IPISNFLEPHLHHIDSSP--PTTSSPHIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPP 120
            + ISNFLEP LHHID SP  PT+ S HIP+S+SSPC+ICSDLVDESVQVDTSLAGS+ PP
Sbjct: 482  LHISNFLEPRLHHIDPSPPSPTSHSSHIPRSNSSPCNICSDLVDESVQVDTSLAGSSFPP 541

Query: 121  STSNSTSIEPPVD-FSSLGTHPMITRAKASIFKTRHPANLGMLGSSGLLFALLASTEPKG 180
              S+  SIE   D  SSLG+HPMITRAKA IFKTRHPANLG+LGS GLL  LL STEPKG
Sbjct: 542  LASSPHSIELAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSFGLLSTLLTSTEPKG 601

Query: 181  FKSAAKNPAWVAAMDEEIRALQQTDTWTLVPRSANTNIVGSKWMFCIKYLPDGFVERFKA 240
            FKSAAKNP W+A MDEE++ALQQ                                     
Sbjct: 602  FKSAAKNPVWLATMDEEVQALQQ------------------------------------- 661

Query: 241  RLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLQQLDVKNVFLNGTLIERV 300
                 GYTQVPGLDYTDTFS VVKATTVRVVLS+AVTNKWPL+Q DVKN FLNGTL E V
Sbjct: 662  ----NGYTQVPGLDYTDTFSLVVKATTVRVVLSLAVTNKWPLRQFDVKNAFLNGTLTEHV 721

Query: 301  HMEQPPGYVDPRFPMHVCLLKKALYGLKQASRAWFQRFSSFLLTLGFSCSRADTSLFVFH 360
            +MEQP GY+D RFP HVCLLKKALYGLKQA RAWFQRFSSFLLTLGFS SRA  SLFVFH
Sbjct: 722  YMEQPLGYIDSRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSSSRAYISLFVFH 781

Query: 361  QQSNLIYLLLYVDDIIVIDNNSSLINSFTRKLHSEFATKDLGSLSYFFGLEASPTPDGLF 420
            QQS+LIYLLLYV DIIV  NN SL+++FTRKLHSEFATKDLGSLSYF GLEASPTPDGLF
Sbjct: 782  QQSSLIYLLLYVYDIIVTGNNPSLLDNFTRKLHSEFATKDLGSLSYFLGLEASPTPDGLF 841

Query: 421  ISPLKYARDILTRAQLLDSKPVHTIMVVSQHLTVDGSPFSDPTLYRSLVGALQYLTITHP 480
            IS LKYARDILTRAQLLDSKPVHT MVVSQHLT+  SPFS+PT YRSLVGALQYLTIT P
Sbjct: 842  ISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTIASSPFSNPTFYRSLVGALQYLTITRP 901

Query: 481  DIAYTVNSVSQFLHAPTADHFLADKRILRYVKGTLHFGLTFRPSTVPSTLVAYSDADWAG 540
            DIA+ VNSVSQFLHAPT D+FLA KRILRYVKGTLHFGLTFRPST+PS LVAYSDADWAG
Sbjct: 902  DIAHAVNSVSQFLHAPTIDNFLAVKRILRYVKGTLHFGLTFRPSTIPSALVAYSDADWAG 961

Query: 541  CPDTRRSTSGYSIYLGNNLISWSAKKQPTVSRSSCESEYRALATTVAELLWVTHLLHDLK 600
            CPDTRRSTS YSIYLGNNL+SWSAKKQPTVSRSSCESEYRALA T AELLW+THLLHDLK
Sbjct: 962  CPDTRRSTSSYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALAMTAAELLWLTHLLHDLK 1021

Query: 601  VPISQQPLLLCDNKSAIFLSSNPVSHKRAKHVELDYHFLRELVIAGKLRTQYVPSHLQVA 660
            VPI QQ LLLCDNKSAIFLSSNPVSHKRAKHVELDYHFLRELV+AGKL TQYVPSHLQVA
Sbjct: 1022 VPIPQQSLLLCDNKSAIFLSSNPVSHKRAKHVELDYHFLRELVVAGKLCTQYVPSHLQVA 1077

Query: 661  DIFTKSISRPLFEFFRSKLHVRSNPTLS-LRGGVKDS 694
            DIFTKS+SRPLFEFFRSKLH+RSNPTLS L GGVKD+
Sbjct: 1082 DIFTKSVSRPLFEFFRSKLHIRSNPTLSLLEGGVKDT 1077

[Close]

BLAST of CmaCh11G012610 vs. NCBI nr
Match: RVW43615.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 1045.8 bits (2703), Expect = 1.6e-301
Identity = 523/607 (86.16%), Postives = 554/607 (91.27%), Query Frame = 0


Query: 1    MPNKLSPRSIPCIFLGYSPVHKEFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLST 60
            MPNKLSPRSIPCIFLGYSP HK FRCLDP T++LYIT HAQFDETHFP +PSSQAQPLS+
Sbjct: 515  MPNKLSPRSIPCIFLGYSPSHKGFRCLDPTTSRLYITRHAQFDETHFPTVPSSQAQPLSS 574

Query: 61   IPISNFLEPHLHHIDSSPPTTSSP--HIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPP 120
            + ISNFLEP LHHID SPP+  SP  HIP+S+SSPC+ICSDLVDESV+VDTSLAGS+LPP
Sbjct: 575  LHISNFLEPRLHHIDPSPPSPPSPSSHIPRSNSSPCNICSDLVDESVKVDTSLAGSSLPP 634

Query: 121  STSNSTSIEPPVD-FSSLGTHPMITRAKASIFKTRHPANLGMLGSSGLLFALLASTEPKG 180
              S+  SIE   D  SSLG+HPMITRAKA IFKTRHPANLG+LGSSGLL ALLASTEPKG
Sbjct: 635  LASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSSGLLSALLASTEPKG 694

Query: 181  FKSAAKNPAWVAAMDEEIRALQQTDTWTLVPRSANTNIVGSKWMFCIKYLPDGFVERFKA 240
            FKSAAKNPAW+AAMDEE++ALQQ  TW LVPR  NTNIVGSKW+F  KYLPDG VER KA
Sbjct: 695  FKSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNIVGSKWVFRTKYLPDGSVERLKA 754

Query: 241  RLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLQQLDVKNVFLNGTLIERV 300
            RLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLS+A+TNKWPL+QLDVKN FLNGTL E V
Sbjct: 755  RLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSLAITNKWPLRQLDVKNAFLNGTLTEHV 814

Query: 301  HMEQPPGYVDPRFPMHVCLLKKALYGLKQASRAWFQRFSSFLLTLGFSCSRADTSLFVFH 360
            +MEQPPGY+DPRFP HVCLLKKALYGLKQA RAWFQRFSSFLLTLGFSCSRADTSLFVFH
Sbjct: 815  YMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSLFVFH 874

Query: 361  QQSNLIYLLLYVDDIIVIDNNSSLINSFTRKLHSEFATKDLGSLSYFFGLEASPTPDGLF 420
            QQS+LIYLLLYVDDIIV  NN SL++SFTRKLHSEFATKDLGSLSYF GLEASPTPDGLF
Sbjct: 875  QQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSEFATKDLGSLSYFLGLEASPTPDGLF 934

Query: 421  ISPLKYARDILTRAQLLDSKPVHTIMVVSQHLTVDGSPFSDPTLYRSLVGALQYLTITHP 480
            IS LKYARDILTRAQLLDSKPVHT MVVSQHLTV GSPFS+PTLYRSLVGALQYLTIT P
Sbjct: 935  ISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTVAGSPFSNPTLYRSLVGALQYLTITRP 994

Query: 481  DIAYTVNSVSQFLHAPTADHFLADKRILRYVKGTLHFGLTFRPSTVPSTLVAYSDADWAG 540
            DIA+ VNSVSQFLHAPT DHFLA KRILRYVKGTLHFGLTFRPST+PS LVAYSDADWAG
Sbjct: 995  DIAHAVNSVSQFLHAPTIDHFLAVKRILRYVKGTLHFGLTFRPSTIPSALVAYSDADWAG 1054

Query: 541  CPDTRRSTSGYSIYLGNNLISWSAKKQPTVSRSSCESEYRALATTVAELLWVTHLLHDLK 600
            CPDTRRSTSGYSIYLGNNL+SWSAKKQPTV RSSCESEYRALA T AELLW+THLLHDLK
Sbjct: 1055 CPDTRRSTSGYSIYLGNNLVSWSAKKQPTVLRSSCESEYRALAMTAAELLWLTHLLHDLK 1114

Query: 601  VPISQQP 605
            VPI QQP
Sbjct: 1115 VPIPQQP 1121

[Close]

BLAST of CmaCh11G012610 vs. NCBI nr
Match: RVW19545.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 1025.0 bits (2649), Expect = 3.0e-295
Identity = 507/559 (90.70%), Postives = 529/559 (94.63%), Query Frame = 0


Query: 135 LGTHPMITRAKASIFKTRHPANLGMLGSSGLLFALLASTEPKGFKSAAKNPAWVAAMDEE 194
           LG+HPMITRAKA IFKTRHPANLG+LGSSGLL ALLASTEPKGFKSAAKNPAW+AAMDEE
Sbjct: 36  LGSHPMITRAKAGIFKTRHPANLGVLGSSGLLSALLASTEPKGFKSAAKNPAWLAAMDEE 95

Query: 195 IRALQQTDTWTLVPRSANTNIVGSKWMFCIKYLPDGFVERFKARLVAKGYTQVPGLDYTD 254
           ++ALQQ  TWTLVPR  NTNIVGSKW+F  KYLPDG VER KARLVAKGYTQVPGLDYTD
Sbjct: 96  VQALQQNGTWTLVPRPVNTNIVGSKWVFRTKYLPDGSVERLKARLVAKGYTQVPGLDYTD 155

Query: 255 TFSPVVKATTVRVVLSIAVTNKWPLQQLDVKNVFLNGTLIERVHMEQPPGYVDPRFPMHV 314
           TFSPVVKATTVRVVLS+AVTNKWPL+QLDVKN FLNGTL E V+MEQPPGY+DPRFP HV
Sbjct: 156 TFSPVVKATTVRVVLSLAVTNKWPLRQLDVKNAFLNGTLTEHVYMEQPPGYIDPRFPTHV 215

Query: 315 CLLKKALYGLKQASRAWFQRFSSFLLTLGFSCSRADTSLFVFHQQSNLIYLLLYVDDIIV 374
           CLLKKALYGLKQA RAWFQRFSSFLLTLGFSCSRADTSLFVFHQQS+LIYLLLYVDDIIV
Sbjct: 216 CLLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSLFVFHQQSSLIYLLLYVDDIIV 275

Query: 375 IDNNSSLINSFTRKLHSEFATKDLGSLSYFFGLEASPTPDGLFISPLKYARDILTRAQLL 434
             NN SL++SFTRKLHSEFATKDLGSLSYF GLEASPTPDGLFIS LKYARDILTRAQLL
Sbjct: 276 TGNNPSLLDSFTRKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLL 335

Query: 435 DSKPVHTIMVVSQHLTVDGSPFSDPTLYRSLVGALQYLTITHPDIAYTVNSVSQFLHAPT 494
           DSKPVHT MVVSQHLTV GSPFS+PTLYRSLVGALQYLTIT PDIA+ VNSVSQFLHAPT
Sbjct: 336 DSKPVHTPMVVSQHLTVAGSPFSNPTLYRSLVGALQYLTITRPDIAHAVNSVSQFLHAPT 395

Query: 495 ADHFLADKRILRYVKGTLHFGLTFRPSTVPSTLVAYSDADWAGCPDTRRSTSGYSIYLGN 554
            DHFLA KRILRYVKGTLHFGLTFRPST+PS LVAYSDADWAGCPDTRRSTSGYSIYLGN
Sbjct: 396 IDHFLAVKRILRYVKGTLHFGLTFRPSTIPSALVAYSDADWAGCPDTRRSTSGYSIYLGN 455

Query: 555 NLISWSAKKQPTVSRSSCESEYRALATTVAELLWVTHLLHDLKVPISQQPLLLCDNKSAI 614
           NL+SWSAKKQPTVSRSSCESEYRALA T AELLW+THLLHDLKVPI QQPLLLCDNKSAI
Sbjct: 456 NLVSWSAKKQPTVSRSSCESEYRALAMTAAELLWLTHLLHDLKVPIPQQPLLLCDNKSAI 515

Query: 615 FLSSNPVSHKRAKHVELDYHFLRELVIAGKLRTQYVPSHLQVADIFTKSISRPLFEFFRS 674
           FLSSNPVSHKRAKHVELDYHFLRELV+AGKLRTQYVPSHLQVADIFTKS+SRPLFEFFRS
Sbjct: 516 FLSSNPVSHKRAKHVELDYHFLRELVVAGKLRTQYVPSHLQVADIFTKSVSRPLFEFFRS 575

Query: 675 KLHVRSNPTLSLRGGVKDS 694
           KLH+RSNPTLSLRGGVKD+
Sbjct: 576 KLHIRSNPTLSLRGGVKDT 594

[Close]

BLAST of CmaCh11G012610 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 399.1 bits (1024), Expect = 7.5e-111
Identity = 211/478 (44.14%), Postives = 292/478 (61.09%), Query Frame = 0


Query: 166 LFALLASTEPKGFKSAAKNPAWVAAMDEEIRALQQTDTWTLVPRSANTNIVGSKWMFCIK 225
           L  +  + EP  +  A +   W  AMD+EI A++ T TW +     N   +G KW++ IK
Sbjct: 77  LVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIK 136

Query: 226 YLPDGFVERFKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSIAVTNKWPLQQLDVK 285
           Y  DG +ER+KARLVAKGYTQ  G+D+ +TFSPV K T+V+++L+I+    + L QLD+ 
Sbjct: 137 YNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDIS 196

Query: 286 NVFLNGTLIERVHMEQPPGYV----DPRFPMHVCLLKKALYGLKQASRAWFQRFSSFLLT 345
           N FLNG L E ++M+ PPGY     D   P  VC LKK++YGLKQASR WF +FS  L+ 
Sbjct: 197 NAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIG 256

Query: 346 LGFSCSRADTSLFVFHQQSNLIYLLLYVDDIIVIDNNSSLINSFTRKLHSEFATKDLGSL 405
            GF  S +D + F+    +  + +L+YVDDII+  NN + ++    +L S F  +DLG L
Sbjct: 257 FGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPL 316

Query: 406 SYFFGLEASPTPDGLFISPLKYARDILTRAQLLDSKPVHTIMVVSQHLTV-DGSPFSDPT 465
            YF GLE + +  G+ I   KYA D+L    LL  KP    M  S   +   G  F D  
Sbjct: 317 KYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAK 376

Query: 466 LYRSLVGALQYLTITHPDIAYTVNSVSQFLHAPTADHFLADKRILRYVKGTLHFGLTFRP 525
            YR L+G L YL IT  DI++ VN +SQF  AP   H  A  +IL Y+KGT+  GL F  
Sbjct: 377 AYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGL-FYS 436

Query: 526 STVPSTLVAYSDADWAGCPDTRRSTSGYSIYLGNNLISWSAKKQPTVSRSSCESEYRALA 585
           S     L  +SDA +  C DTRRST+GY ++LG +LISW +KKQ  VS+SS E+EYRAL+
Sbjct: 437 SQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALS 496

Query: 586 TTVAELLWVTHLLHDLKVPISQQPLLLCDNKSAIFLSSNPVSHKRAKHVELDYHFLRE 639
               E++W+     +L++P+S+  LL CDN +AI +++N V H+R KH+E D H +RE
Sbjct: 497 FATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

[Close]

BLAST of CmaCh11G012610 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 230.3 bits (586), Expect = 4.6e-60
Identity = 116/226 (51.33%), Postives = 157/226 (69.47%), Query Frame = 0


Query: 363 IYLLLYVDDIIVIDNNSSLINSFTRKLHSEFATKDLGSLSYFFGLEASPTPDGLFISPLK 422
           +YLLLYVDDI++  ++++L+N    +L S F+ KDLG + YF G++    P GLF+S  K
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60

Query: 423 YARDILTRAQLLDSKPVHTIMVVSQHLTVDGSPFSDPTLYRSLVGALQYLTITHPDIAYT 482
           YA  IL  A +LD KP+ T + +  + +V  + + DP+ +RS+VGALQYLT+T PDI+Y 
Sbjct: 61  YAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYA 120

Query: 483 VNSVSQFLHAPTADHFLADKRILRYVKGTLHFGLTFRPSTVPSTLVAYSDADWAGCPDTR 542
           VN V Q +H PT   F   KR+LRYVKGT+  GL    ++    + A+ D+DWAGC  TR
Sbjct: 121 VNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNS-KLNVQAFCDSDWAGCTSTR 180

Query: 543 RSTSGYSIYLGNNLISWSAKKQPTVSRSSCESEYRALATTVAELLW 589
           RST+G+  +LG N+ISWSAK+QPTVSRSS E+EYRALA T AEL W
Sbjct: 181 RSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of CmaCh11G012610 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 106.7 bits (265), Expect = 7.7e-23
Identity = 60/145 (41.38%), Postives = 81/145 (55.86%), Query Frame = 0


Query: 140 MITRAKASIFKTRHPANLGMLGSSGLLFALLASTEPKGFKSAAKNPAWVAAMDEEIRALQ 199
           M+TR+KA I K        +     L        EPK    A K+P W  AM EE+ AL 
Sbjct: 1   MLTRSKAGINK--------LNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALS 60

Query: 200 QTDTWTLVPRSANTNIVGSKWMFCIKYLPDGFVERFKARLVAKGYTQVPGLDYTDTFSPV 259
           +  TW LVP   N NI+G KW+F  K   DG ++R KARLVAKG+ Q  G+ + +T+SPV
Sbjct: 61  RNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPV 120

Query: 260 VKATTVRVVLSIAVTNKWPLQQLDV 285
           V+  T+R +L++A       QQL+V
Sbjct: 121 VRTATIRTILNVA-------QQLEV 130

[Close]

BLAST of CmaCh11G012610 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-13
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 471 YLTITHPDIAYTVNSVSQFLHAPTADHFLADKRILRYVKGTLHFGLTFRPSTVPSTLVAY 530
           YLTIT PD+ + VN +SQF  A       A  ++L YVKGT+  GL F  +T    L A+
Sbjct: 2   YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGL-FYSATSDLQLKAF 61

Query: 531 SDADWAGCPDTRRSTSGY 549
           +D+DWA CPDTRRS +G+
Sbjct: 62  ADSDWASCPDTRRSVTGF 78

The following BLAST results are available for this feature:

BLAST of CmaCh11G012610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.7e-147	40.05	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.3e-144	40.23	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	4.3e-87	36.09	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	3.1e-85	31.90	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P92519	6.5e-59	51.33	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CmaCh11G012610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438EBA0	0.0e+00	86.98	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438E275	0.0e+00	86.68	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A2N9EEM3	0.0e+00	78.66	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]
A0A438IHQ8	0.0e+00	79.91	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A2N9I601	2.6e-310	80.39	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49318 PE=4 SV=1	[more]

BLAST of CmaCh11G012610 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW45095.1	0.0e+00	86.98	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW41798.1	0.0e+00	86.68	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
RVW96109.1	0.0e+00	79.91	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
RVW43615.1	1.6e-301	86.16	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
RVW19545.1	3.0e-295	90.70	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]

BLAST of CmaCh11G012610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	7.5e-111	44.14	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	4.6e-60	51.33	DNA/RNA polymerases superfamily protein	[more]
ATMG00820.1	7.7e-23	41.38	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00240.1	1.1e-13	48.72	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 202..442 e-value: 4.4E-59 score: 200.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..92
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 170..550
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 528..667 e-value: 1.14962E-76 score: 240.063
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 203..634

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G012610.1	CmaCh11G012610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0006412	translation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030247	polysaccharide binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0003735	structural constituent of ribosome