CmaCh11G012000 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G012000
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptiontranslationally-controlled tumor protein homolog
LocationCma_Chr11: 7133953 .. 7135340 (-)
RNA-Seq ExpressionCmaCh11G012000
SyntenyCmaCh11G012000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCTTCTCCGTGGCTATAAACATTCACCGCCCCTAGCGTTCTCCTTACGCTCTCTTTCTTTCTTCACCTTTTCCCCTCTACGTTTATTCTTCCATTCTCTCCCTCCTCCGATTTTGTTTGCAGCCATGATCGTCTACCAGGACCAACTTACAGGTATTTCCCCCTCTCCTTCAATTCCCCCTTGCATCCTTGTTTGTTTCTGTTTCGCTCTTACTGTTGCTCCCAATCTTGCTTCCCCAATAAATTTTATCCTTCTTTATGTATTGGATCATTCAATGCTGAAGTTTGGATTGGTTTGGAGCTTTTAGGTGTTCTGTTTTTGTGCTTGACTAGACTCCATTGATGAACTCAGGTGATGAACTTCTGTCAGACTCCTTCCCATACAAGGAGATTGAGAATGAGATGTTGTGGGAAGTGGAAGGAAAGGTAAGGAAACTGACATATTCTTCTAGTAATCTGCAAGTCTATTGATTCAACTAATAACGAATCATAGATGAAGATTTTTCGAGACTGACACGAGTTTAATCCCTGTGTTTTGTTTATTTGTCTGGAGTTTCTTATTCTGGGTAATTTGGGATTTGGATAACAGTGGATTGTACAAGGAGCAGTGGACGTAGACATCGGGGCGAACCCGTCTGCAGAAGGAGGTGAAGAAGATGAATGCGTGGAGGAAGAAGCTGTGAAGGTTGTGGATATTGTTGACACCTTCAGACTTCAGGTAAGAAAGAGTTGTGTTTTTCAATTCATTGGTATATATATAGTTTGGTTTTGGATGAATGGGTAAGAGAAAGTGTTGTGTGTGTGGGCATATATATTGGCAGGAACAACCTCCATTTGACAAGAAGCAGTTTATCACATACATGAAAAGATACATAAAGCTACTAACTCCCAAACTGGATGAAGAGAAACAAGAGGTGTTTAAGAAGCACATCCCAGAGGCAACCAAGTTCCTGCTGAGCAAGATCAATGACCTCCAATTGTAAGTTCAAGCTTTGTTTATTGTTAGGACACATCAAGAAGGTTGGTTATTAAGCTCAAATGGGTTTGAATTGAATGCAGCTTTGTGGGGGAAGGCATGCATGATGATGCCGCTCTGGTATTTGCATACTACAAAGAAGGGGCGACTGATCCTACATTTATCTATATTGCCTATGGGTTGAAGGAAGTCAAGTGCTGAAGGAATCCCATATTTTTCTGCTCGCAATACTTCTCTTTTTCTTTTTGATATTCTAAGCTAATTTACATCAACTTTATGCCCCCAATCCCAAAATACAATATACTATAATATAATATATGGCATGCATTATTTTATCATCTTTGTTTCGCTTTTGGGTGTATATTATTCGAATGACGAAGAATAGGCAAGTAAAATAACACGAAGAATAAG

mRNA sequence

TTCCTTCTCCGTGGCTATAAACATTCACCGCCCCTAGCGTTCTCCTTACGCTCTCTTTCTTTCTTCACCTTTTCCCCTCTACGTTTATTCTTCCATTCTCTCCCTCCTCCGATTTTGTTTGCAGCCATGATCGTCTACCAGGACCAACTTACAGGTGATGAACTTCTGTCAGACTCCTTCCCATACAAGGAGATTGAGAATGAGATGTTGTGGGAAGTGGAAGGAAAGTGGATTGTACAAGGAGCAGTGGACGTAGACATCGGGGCGAACCCGTCTGCAGAAGGAGGTGAAGAAGATGAATGCGTGGAGGAAGAAGCTGTGAAGGTTGTGGATATTGTTGACACCTTCAGACTTCAGGAACAACCTCCATTTGACAAGAAGCAGTTTATCACATACATGAAAAGATACATAAAGCTACTAACTCCCAAACTGGATGAAGAGAAACAAGAGGTGTTTAAGAAGCACATCCCAGAGGCAACCAAGTTCCTGCTGAGCAAGATCAATGACCTCCAATTCTTTGTGGGGGAAGGCATGCATGATGATGCCGCTCTGGTATTTGCATACTACAAAGAAGGGGCGACTGATCCTACATTTATCTATATTGCCTATGGGTTGAAGGAAGTCAAGTGCTGAAGGAATCCCATATTTTTCTGCTCGCAATACTTCTCTTTTTCTTTTTGATATTCTAAGCTAATTTACATCAACTTTATGCCCCCAATCCCAAAATACAATATACTATAATATAATATATGGCATGCATTATTTTATCATCTTTGTTTCGCTTTTGGGTGTATATTATTCGAATGACGAAGAATAGGCAAGTAAAATAACACGAAGAATAAG

Coding sequence (CDS)

ATGATCGTCTACCAGGACCAACTTACAGGTGATGAACTTCTGTCAGACTCCTTCCCATACAAGGAGATTGAGAATGAGATGTTGTGGGAAGTGGAAGGAAAGTGGATTGTACAAGGAGCAGTGGACGTAGACATCGGGGCGAACCCGTCTGCAGAAGGAGGTGAAGAAGATGAATGCGTGGAGGAAGAAGCTGTGAAGGTTGTGGATATTGTTGACACCTTCAGACTTCAGGAACAACCTCCATTTGACAAGAAGCAGTTTATCACATACATGAAAAGATACATAAAGCTACTAACTCCCAAACTGGATGAAGAGAAACAAGAGGTGTTTAAGAAGCACATCCCAGAGGCAACCAAGTTCCTGCTGAGCAAGATCAATGACCTCCAATTCTTTGTGGGGGAAGGCATGCATGATGATGCCGCTCTGGTATTTGCATACTACAAAGAAGGGGCGACTGATCCTACATTTATCTATATTGCCTATGGGTTGAAGGAAGTCAAGTGCTGA

Protein sequence

MIVYQDQLTGDELLSDSFPYKEIENEMLWEVEGKWIVQGAVDVDIGANPSAEGGEEDECVEEEAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQEVFKKHIPEATKFLLSKINDLQFFVGEGMHDDAALVFAYYKEGATDPTFIYIAYGLKEVKC
Homology
[Close]
BLAST of CmaCh11G012000 vs. ExPASy Swiss-Prot
Match: Q5J907 (Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera OX=51953 GN=TCTP PE=2 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.2e-78
Identity = 140/168 (83.33%), Postives = 155/168 (92.26%), Query Frame = 0 

Query: 1   MIVYQDQLTGDELLSDSFPYKEIENEMLWEVEGKWIVQGAVDVDIGANPSAEGGEEDECV 60
           M+VYQD LTGDELLSDSFPYKEI N MLWEVEGKW++QGAV+VDIGANPSAEGGEEDE V
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEIHNGMLWEVEGKWVIQGAVNVDIGANPSAEGGEEDEGV 60

Query: 61  EEEAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQEVFKKHIPEATKF 120
           +++AVKVVDIVDTFRLQEQP FDKKQF+T+MKRYIK LTPKLD EKQE+FKKHI  ATKF
Sbjct: 61  DDQAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLDAEKQELFKKHIEGATKF 120

Query: 121 LLSKINDLQFFVGEGMHDDAALVFAYYKEGATDPTFIYIAYGLKEVKC 169
           LLSK++DLQFFVGE MHDD  LVFAYYK+GATDPTF+Y AYGLKE+KC
Sbjct: 121 LLSKLSDLQFFVGESMHDDGCLVFAYYKDGATDPTFLYFAYGLKEIKC 168

[Close]
BLAST of CmaCh11G012000 vs. ExPASy Swiss-Prot
Match: Q9ZSW9 (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis OX=3981 GN=TCTP PE=2 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 6.4e-77
Identity = 139/168 (82.74%), Postives = 154/168 (91.67%), Query Frame = 0 

Query: 1   MIVYQDQLTGDELLSDSFPYKEIENEMLWEVEGKWIVQGAVDVDIGANPSAEGGEEDECV 60
           M+VYQD LTGDELLSDSFPYKEI N +LWEVEGKW+VQGAVDVDIGANPSAEG +EDE V
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEIHNGILWEVEGKWVVQGAVDVDIGANPSAEGADEDEGV 60

Query: 61  EEEAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQEVFKKHIPEATKF 120
           +++AVKVVDIVDTFRLQEQP FDKKQF+TYMKR+IKLLTPKLDEEKQE FKK+I  ATKF
Sbjct: 61  DDQAVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLDEEKQESFKKNIEGATKF 120

Query: 121 LLSKINDLQFFVGEGMHDDAALVFAYYKEGATDPTFIYIAYGLKEVKC 169
           LLSK++DLQFFVGE MHDD +LVFAYY+ GATDPTF+Y AY LKEVKC
Sbjct: 121 LLSKLSDLQFFVGESMHDDGSLVFAYYRGGATDPTFLYFAYALKEVKC 168

[Close]
BLAST of CmaCh11G012000 vs. ExPASy Swiss-Prot
Match: P43349 (Translationally-controlled tumor protein homolog OS=Solanum tuberosum OX=4113 GN=TCTP PE=2 SV=2)

HSP 1 Score: 280.8 bits (717), Expect = 1.0e-74
Identity = 134/168 (79.76%), Postives = 153/168 (91.07%), Query Frame = 0 

Query: 1   MIVYQDQLTGDELLSDSFPYKEIENEMLWEVEGKWIVQGAVDVDIGANPSAEGGEEDECV 60
           M+VYQD LTGDELLSDSFPYKEI+N MLWEV+GKW+VQGAVDV+IGANPSAEGG EDE V
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEIQNGMLWEVQGKWVVQGAVDVNIGANPSAEGGGEDEGV 60

Query: 61  EEEAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQEVFKKHIPEATKF 120
           +++AVKVVDIVDTFRLQEQP FDKKQF+TY+KRYIK LTPKL+ E QE FKK+I  ATKF
Sbjct: 61  DDQAVKVVDIVDTFRLQEQPAFDKKQFVTYIKRYIKNLTPKLEGEAQEAFKKNIESATKF 120

Query: 121 LLSKINDLQFFVGEGMHDDAALVFAYYKEGATDPTFIYIAYGLKEVKC 169
           LLSK+ D QFFVGEGMHDD+ALVFAYYK+G+ DPTF+Y+A GLKE+KC
Sbjct: 121 LLSKLKDFQFFVGEGMHDDSALVFAYYKDGSADPTFLYLAPGLKEIKC 168

[Close]
BLAST of CmaCh11G012000 vs. ExPASy Swiss-Prot
Match: P35681 (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica OX=39947 GN=TCTP PE=1 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 3.9e-74
Identity = 132/168 (78.57%), Postives = 152/168 (90.48%), Query Frame = 0 

Query: 1   MIVYQDQLTGDELLSDSFPYKEIENEMLWEVEGKWIVQGAVDVDIGANPSAEGGEEDECV 60
           M+VYQD LTGDELLSDSFPY+EIEN +LWEV+GKW+VQGA+DVDIGANPSAEGG +DE V
Sbjct: 1   MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDIGANPSAEGGGDDEGV 60

Query: 61  EEEAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQEVFKKHIPEATKF 120
           +++AVKVVDIVDTFRLQEQPPFDKKQF+T+MKRYIK L+ KLD EKQE FKK+I  ATK+
Sbjct: 61  DDQAVKVVDIVDTFRLQEQPPFDKKQFVTFMKRYIKNLSAKLDAEKQEEFKKNIEGATKY 120

Query: 121 LLSKINDLQFFVGEGMHDDAALVFAYYKEGATDPTFIYIAYGLKEVKC 169
           LL K+ DLQFFVGE MHDD  LVFAYYK+GATDPTF+Y ++GLKEVKC
Sbjct: 121 LLGKLKDLQFFVGESMHDDGGLVFAYYKDGATDPTFLYFSHGLKEVKC 168

[Close]
BLAST of CmaCh11G012000 vs. ExPASy Swiss-Prot
Match: Q944T2 (Translationally-controlled tumor protein homolog OS=Glycine max OX=3847 GN=TCTP PE=2 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 8.6e-74
Identity = 136/168 (80.95%), Postives = 149/168 (88.69%), Query Frame = 0 

Query: 1   MIVYQDQLTGDELLSDSFPYKEIENEMLWEVEGKWIVQGAVDVDIGANPSAEGGEEDECV 60
           M+VYQD LTGDELLSDSF YKEIEN MLWEVEGKW+V+GAVDVDIGANPSAEGG EDE V
Sbjct: 1   MLVYQDLLTGDELLSDSFRYKEIENGMLWEVEGKWVVKGAVDVDIGANPSAEGGGEDEGV 60

Query: 61  EEEAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQEVFKKHIPEATKF 120
           ++ AVKVVDIVDTFRLQEQP FDKKQF+T+MKR+IK LTPKLD E+QE+FKKHI  ATK+
Sbjct: 61  DDAAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRFIKNLTPKLDAEQQELFKKHIEGATKY 120

Query: 121 LLSKINDLQFFVGEGMHDDAALVFAYYKEGATDPTFIYIAYGLKEVKC 169
           LLSKI D QFFVGE M DDA LVFAYYK+GA DPTF+Y AY LKEVKC
Sbjct: 121 LLSKIKDFQFFVGESMGDDACLVFAYYKDGAADPTFLYFAYALKEVKC 168

[Close]
BLAST of CmaCh11G012000 vs. TAIR 10
Match: AT3G05540.1 (Methionine sulfoxide reductase (MSS4-like) family protein )

HSP 1 Score: 266.5 bits (680), Expect = 1.4e-71
Identity = 128/169 (75.74%), Postives = 149/169 (88.17%), Query Frame = 0 

Query: 1   MIVYQDQLTGDELLSDSFPYKEIENEMLWEVEGKWIVQGAVDVDIGANPSAEGGEEDECV 60
           M+VYQD LTGDELLSDSFPYKEIEN MLWEVEGKW+V+GA+D DIGANP  EGG EDE V
Sbjct: 1   MLVYQDILTGDELLSDSFPYKEIENGMLWEVEGKWVVKGAMDFDIGANPGEEGG-EDEGV 60

Query: 61  EEEAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQEVFKKHIPEATKF 120
           +++AVKVVDI+DTFRLQEQP FDKKQF+ +MKRYIK L+PKLD E QE+FKKHI  ATKF
Sbjct: 61  DDQAVKVVDIIDTFRLQEQPSFDKKQFVMFMKRYIKQLSPKLDSENQELFKKHIESATKF 120

Query: 121 LLSKINDLQFFVGEGMH-DDAALVFAYYKEGATDPTFIYIAYGLKEVKC 169
           L+SK+ D QFFVGE M  ++ +LVFAYY+EGATDPTF+Y+AYGLKE+KC
Sbjct: 121 LMSKLKDFQFFVGESMEGEEGSLVFAYYREGATDPTFLYLAYGLKEIKC 168

[Close]
BLAST of CmaCh11G012000 vs. TAIR 10
Match: AT3G16640.1 (translationally controlled tumor protein )

HSP 1 Score: 263.5 bits (672), Expect = 1.2e-70
Identity = 128/168 (76.19%), Postives = 145/168 (86.31%), Query Frame = 0 

Query: 1   MIVYQDQLTGDELLSDSFPYKEIENEMLWEVEGKWIVQGAVDVDIGANPSAEGGEEDECV 60
           M+VYQD LTGDELLSDSFPYKEIEN +LWEVEGKW+  GAVDV+IGANPSAE G EDE V
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNIGANPSAEEGGEDEGV 60

Query: 61  EEEAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQEVFKKHIPEATKF 120
           ++   KVVDIVDTFRLQEQP +DKK FI Y+K+YIKLLTPKL EE Q VFKK I  ATKF
Sbjct: 61  DDSTQKVVDIVDTFRLQEQPTYDKKGFIAYIKKYIKLLTPKLSEEDQAVFKKGIEGATKF 120

Query: 121 LLSKINDLQFFVGEGMHDDAALVFAYYKEGATDPTFIYIAYGLKEVKC 169
           LL +++D QFFVGEGMHDD+ LVFAYYKEG+T+PTF+Y A+GLKEVKC
Sbjct: 121 LLPRLSDFQFFVGEGMHDDSTLVFAYYKEGSTNPTFLYFAHGLKEVKC 168

The following BLAST results are available for this feature:
BLAST of CmaCh11G012000 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q5J9071.2e-7883.33Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tener... [more]
Q9ZSW96.4e-7782.74Translationally-controlled tumor protein homolog OS=Hevea brasiliensis OX=3981 G... [more]
P433491.0e-7479.76Translationally-controlled tumor protein homolog OS=Solanum tuberosum OX=4113 GN... [more]
P356813.9e-7478.57Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica... [more]
Q944T28.6e-7480.95Translationally-controlled tumor protein homolog OS=Glycine max OX=3847 GN=TCTP ... [more]
BLAST of CmaCh11G012000 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G05540.11.4e-7175.74Methionine sulfoxide reductase (MSS4-like) family protein [more]
AT3G16640.11.2e-7076.19translationally controlled tumor protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018105Translationally controlled tumour proteinPRINTSPR01653TCTPROTEINcoord: 46..57
score: 70.54
coord: 1..21
score: 62.76
coord: 60..79
score: 56.79
IPR018105Translationally controlled tumour proteinPFAMPF00838TCTPcoord: 1..164
e-value: 2.2E-57
score: 194.0
IPR018105Translationally controlled tumour proteinPANTHERPTHR11991TRANSLATIONALLY CONTROLLED TUMOR PROTEIN-RELATEDcoord: 1..168
IPR011323Mss4/translationally controlled tumour-associated TCTPGENE3D2.170.150.10Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain Acoord: 1..168
e-value: 1.0E-57
score: 197.1
NoneNo IPR availablePANTHERPTHR11991:SF11TRANSLATIONALLY-CONTROLLED TUMOR PROTEIN HOMOLOGcoord: 1..168
IPR018103Translationally controlled tumour protein, conserved sitePROSITEPS01002TCTP_1coord: 45..55
IPR018103Translationally controlled tumour protein, conserved sitePROSITEPS01003TCTP_2coord: 125..147
IPR034737Translationally controlled tumour protein (TCTP) domainPROSITEPS51797TCTP_3coord: 1..168
score: 59.07663
IPR011057Mss4-like superfamilySUPERFAMILY51316Mss4-likecoord: 1..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G012000.1CmaCh11G012000.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm
molecular_function GO:0005509 calcium ion binding