CmaCh11G011930 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G011930
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	serine/arginine-rich splicing factor 11 isoform X1
Location	Cma_Chr11: 7086622 .. 7089927 (+)
RNA-Seq Expression	CmaCh11G011930
Synteny	CmaCh11G011930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAACGTAAATATTTTTCACAAAGGACCCAAAATGTTATGAAATAACCCTTTCTTTTTCTTCAGCGGCTTACCCTTCGGTTCTTTGCCAAAACATTACCCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTGATCGATGGCGGCTTCGTCTTCGTCGGCATCACCCTACACTTCCGATTCATCGTCTTCCTCTTCTCGTCGTCGCCGTCGCCGTAGAACTCGCCGTGAAAAAGATCGGGACGCTCTTAGGATTCGCAAGAAGTCTCGCTCTCATTCTAAGCGTCGTCGCAGGCACCGCCGCTCCTCCTCCAATTCTTTATCTTCCTCCGACTCCGAATCCGATTACTCCCGGTAACCTCAGCAAATTCAATAGTTTTTCTCCTATTATGTTTTTCCTTTGTTGTTTCTGATCTTTTGTTTCCTTGCTCGTTGTTTGATTGCTGTTGATTAGAGTTTGGATTGGGAGATTTAGGTTTTTTGAGGAATCTGTTGTGCCTTTTCTGATTTTTGTTTTTTTGTTTTTTTTGGTTTCCCGATTTTCTACTGGAAGTCATGCGATTTATAGCCCTTTCTGATTTGTTCTATTTTGGTTTTCCCGATCTCTTACAGGAAGTCATACGATTTATGTAATCTTAGTTATGATAGGTTGTTAGTGATTATTGATCGGAAAGAGAACCTTAGCTCTTGGTTCAGAATTGAAACGTATGCCTTTTTCTGTTTAGAAAGCTAAGAATTTAGGACTCATCTTGTGTATTTCCTACTCTTTTAAAAATATGAACAAAAATGTGATCGCGTCATGTTTTTATGTTACATTTAAAATTTTCAATATTTATATATTTTCTTTAAAATAATAACCGAAATAATAACCGAAACAAGAAATGAGATTTTCTTTGTTCTTAAATTCGTAACAAATACAATGTTAGTAATATCTGTAATAAACGAGAAACAAAGAAACAAGAATTTAAATTTTGTTTTTTTTCCCCCAAAATTTGCACACTGTGTTGGGTGCATTTGTTAAAAATGGGGACTGAGAAATATAGAATAGTTACTGAACCGTTTTATTTTTCAATGTTAAAAAACAAGTAAAAATGAAAACATTACCAAGTGATGTAATTGCTTTCTGTTTCTTCATTGGAATGTATTTTATGTAATGGCTTAATTATGCTAGATGTACTAAATATTTTGGCTGGTTTCCTAATTTATACTTTCGAAGATCTTGTTTTTCAGTGAGTGGTATTCTGGTTTCCTTGACAACTATTTTTTCTTAGCACATCTCATGAACCTAAGATAGTTTTTACTTATCCTTGTATATACATGTAGAAGCCATAGCTCTTCTCAAAGCGAGCCTGAAATGTCAGGCCGTTCAAAGCGGCATAAGAAGAATGATGGAACGAAAAAGGTAGATGCTTTAAATAGTCATTTTTATCTTTGGATTTATGTGTTGGCTTTGTAGTTCCACTTGTGGATTTTCACCTTGTTATTTTCACTCTTTTTTGTGCATCTTTGTATAAGGAGAGGGAGCGAAGTAAGAGTCAACACCATAAAAGGCGTAAGCATAAAGCTAAAGAGGTAGACCACTTGCCTGTTTGTGTACTATTTTTCCCTTTGTTGTTGTTAATGTTGTGCTTTCAATGAACTGAGAAATGTTATGGAAATTGCCTTGCTGGCATCATGTCTTTTACCTGTATCTACCTCTAGGCACTTTAGAACATATAGTGATAAAGTAGATGTAACTTTTAACACATGTATTCAATGTTTTAGATTTAATTCAGAAGAGGTGAGATGTAAGCTTCGAGGTAGTATGATAAGCCTCAGTTTAAATTAAAATATAAATGAACATATTGTGATAAAGATTTTAAGAAGATATTTAAGTTTCAATCTAAAATGTTTTTTTGTCCTGGGTAGTAAAAGTATTAACAACCTGAATTACGATAACCCGACTGTGTAAAGAATAAGCATCAAATGAATATTATTCTTCTAATCATTTCATGAGGTGTTAAGGCTCCAAGCATCAGTGTGTTCAAATAGAGTGCAAGCCCTCATTCAGAAAAATAAATTATAAAAATAAGTAGAGGAGAAAGTCTCATGTATGCTAGGCCTAACCACGTGCAATCTAAAGAAAGCATAAGCATTGGGGCTAAAATGTTGAGCCTCTAAGAAAGACAAGCACGCAATCTTTAGACAAAAGATGAAAGTACTGATCTATTTGCCAAATTATCATTATTTTTTTAGTCATGCAATCTTTAGACTACATCTATGATTTGTTTCTGAATTGGATATAGTGTTAGATGTTTGTATGACTATTTACTGATTGATTCTTTGAACTTGGAGTTGGGGTCTGTGGAATGATGATCGGGCTGTTGATTGATTTGCCTGCTGGTTTGTTGTGCGGATTTGTCCTGGCAATCGGAGTCGATTTATAGAAACAGCCAGAAGAGAGAAGTAGCAGCCCTGTGCAGCTGTCTAAGGTTACCTTAACACCATTGTTTATTTTCAGTTCTCTTCTGTTTTGGCATCTCAAATGTCAAATTTACAGTTACTTCATGTATTTGCAGTTTTTAGCGCGGGAGGATGATGGTACACGACGGAGTGCTGTCTCTGGCAAAAAGGTGAAAGATCCGCCTCTTCTTTCTATGTTTCGACATGTTATTGTTAAAACATCTTTGCCTTGTCCAAAAATACTTCTCACTCATCAAATTTGGGAATTTAAAAATGATTTTGAAAAAGGTCAAATGCGAAGTGTCACAAGTACATGGAATGTTGCTGCCATTGATAATTTAGTTTTTCACTATTATTATTATTTTTGCAGATATTGTTGAAACTTGATAAATCAAAGGAGGACAAAGCTGAGGAAAACAAAAGAAATGAATTGCTGAAGTTCTTGAACTCTAGCTTTGACTAATGGGTTGGGTATCCTTGAAATGAAGGAAAGAGGCAAATGATAGAAGAATGGAATATTAGCTGCTGCTGCTGCTGCTGCTGCTGCATGAAAAAATCAGTACAACCAATAGCTGTGTTGAATAAGTTGTAGAGACATTCAAGCTTGTGAGCTTTCTTCTTCCCTTGATTGATGTTTTGACGCATATGGATTGAGATCTATTTTAATTATGAAAAGGAATTTGATTTTATTTGATTGGTTGGGATGGAATGAATGATTGATTTATTGGTTATTATTCTGTTGGGAGTGGGTAACGCGGCTAAGTGTGCAAGGACAAGGTATTGAAAGATAAAAGTGTAATTGTGTGTATGGGAAGAGCATTGGATGGGAGTGTCTCCTCTCTAGTTTCCAACGCCACCTTTGTTGTGAG

mRNA sequence

GAAACGTAAATATTTTTCACAAAGGACCCAAAATGTTATGAAATAACCCTTTCTTTTTCTTCAGCGGCTTACCCTTCGGTTCTTTGCCAAAACATTACCCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTGATCGATGGCGGCTTCGTCTTCGTCGGCATCACCCTACACTTCCGATTCATCGTCTTCCTCTTCTCGTCGTCGCCGTCGCCGTAGAACTCGCCGTGAAAAAGATCGGGACGCTCTTAGGATTCGCAAGAAGTCTCGCTCTCATTCTAAGCGTCGTCGCAGGCACCGCCGCTCCTCCTCCAATTCTTTATCTTCCTCCGACTCCGAATCCGATTACTCCCGAAGCCATAGCTCTTCTCAAAGCGAGCCTGAAATGTCAGGCCGTTCAAAGCGGCATAAGAAGAATGATGGAACGAAAAAGGAGAGGGAGCGAAGTAAGAGTCAACACCATAAAAGGCGTAAGCATAAAGCTAAAGAGAAACAGCCAGAAGAGAGAAGTAGCAGCCCTGTGCAGCTGTCTAAGTTTTTAGCGCGGGAGGATGATGGTACACGACGGAGTGCTGTCTCTGGCAAAAAGATATTGTTGAAACTTGATAAATCAAAGGAGGACAAAGCTGAGGAAAACAAAAGAAATGAATTGCTGAAGTTCTTGAACTCTAGCTTTGACTAATGGGTTGGGTATCCTTGAAATGAAGGAAAGAGGCAAATGATAGAAGAATGGAATATTAGCTGCTGCTGCTGCTGCTGCTGCTGCATGAAAAAATCAGTACAACCAATAGCTGTGTTGAATAAGTTGTAGAGACATTCAAGCTTGTGAGCTTTCTTCTTCCCTTGATTGATGTTTTGACGCATATGGATTGAGATCTATTTTAATTATGAAAAGGAATTTGATTTTATTTGATTGGTTGGGATGGAATGAATGATTGATTTATTGGTTATTATTCTGTTGGGAGTGGGTAACGCGGCTAAGTGTGCAAGGACAAGGTATTGAAAGATAAAAGTGTAATTGTGTGTATGGGAAGAGCATTGGATGGGAGTGTCTCCTCTCTAGTTTCCAACGCCACCTTTGTTGTGAG

Coding sequence (CDS)

ATGGCGGCTTCGTCTTCGTCGGCATCACCCTACACTTCCGATTCATCGTCTTCCTCTTCTCGTCGTCGCCGTCGCCGTAGAACTCGCCGTGAAAAAGATCGGGACGCTCTTAGGATTCGCAAGAAGTCTCGCTCTCATTCTAAGCGTCGTCGCAGGCACCGCCGCTCCTCCTCCAATTCTTTATCTTCCTCCGACTCCGAATCCGATTACTCCCGAAGCCATAGCTCTTCTCAAAGCGAGCCTGAAATGTCAGGCCGTTCAAAGCGGCATAAGAAGAATGATGGAACGAAAAAGGAGAGGGAGCGAAGTAAGAGTCAACACCATAAAAGGCGTAAGCATAAAGCTAAAGAGAAACAGCCAGAAGAGAGAAGTAGCAGCCCTGTGCAGCTGTCTAAGTTTTTAGCGCGGGAGGATGATGGTACACGACGGAGTGCTGTCTCTGGCAAAAAGATATTGTTGAAACTTGATAAATCAAAGGAGGACAAAGCTGAGGAAAACAAAAGAAATGAATTGCTGAAGTTCTTGAACTCTAGCTTTGACTAA

Protein sequence

MAASSSSASPYTSDSSSSSSRRRRRRRTRREKDRDALRIRKKSRSHSKRRRRHRRSSSNSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTKKERERSKSQHHKRRKHKAKEKQPEERSSSPVQLSKFLAREDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD

Homology

[Close]

BLAST of CmaCh11G011930 vs. TAIR 10
Match: AT5G27860.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 129.0 bits (323), Expect = 3.8e-30
Identity = 109/185 (58.92%), Postives = 134/185 (72.43%), Query Frame = 0


Query: 1   MAASSSSASPYTSDSSSSSSRRR--RRRRTRREKDRDALRIRKKSRSHSKRRRRHRRSSS 60
           MAASSSS+S   S  SS S RRR  RR   R ++DRD+L++RKKSRS SK+RRR + SS 
Sbjct: 1   MAASSSSSSSDVSSDSSDSHRRRKDRRHHRRNDRDRDSLKVRKKSRSTSKKRRRRQHSSD 60

Query: 61  NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTK--KERERSKSQHHKRRKHKAK 120
           +        SD S S SSS+S      +S+RHKK++  K  K++ERSKS  HKR K++ +
Sbjct: 61  S--------SDSSYSDSSSESSDSEHEKSRRHKKHEKPKKAKDKERSKSHRHKRHKNRER 120

Query: 121 EKQPEERSSSPVQLSKFLARE-DDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFL 180
           +K   E SS PV+LSKFL R+ DDG RRSAVSGKKILLK+DKSKEDKA E+KRNELLKFL
Sbjct: 121 KKGEGEGSSGPVKLSKFLNRDKDDGERRSAVSGKKILLKVDKSKEDKAAESKRNELLKFL 177

[Close]

BLAST of CmaCh11G011930 vs. TAIR 10
Match: AT5G27860.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 23049 Blast hits to 11981 proteins in 648 species: Archae - 2; Bacteria - 589; Metazoa - 13464; Fungi - 1977; Plants - 1635; Viruses - 89; Other Eukaryotes - 5293 (source: NCBI BLink). )

HSP 1 Score: 129.0 bits (323), Expect = 3.8e-30
Identity = 109/185 (58.92%), Postives = 134/185 (72.43%), Query Frame = 0


Query: 1   MAASSSSASPYTSDSSSSSSRRR--RRRRTRREKDRDALRIRKKSRSHSKRRRRHRRSSS 60
           MAASSSS+S   S  SS S RRR  RR   R ++DRD+L++RKKSRS SK+RRR + SS 
Sbjct: 1   MAASSSSSSSDVSSDSSDSHRRRKDRRHHRRNDRDRDSLKVRKKSRSTSKKRRRRQHSSD 60

Query: 61  NSLSSSDSESDYSRSHSSSQSEPEMSGRSKRHKKNDGTK--KERERSKSQHHKRRKHKAK 120
           +        SD S S SSS+S      +S+RHKK++  K  K++ERSKS  HKR K++ +
Sbjct: 61  S--------SDSSYSDSSSESSDSEHEKSRRHKKHEKPKKAKDKERSKSHRHKRHKNRER 120

Query: 121 EKQPEERSSSPVQLSKFLARE-DDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFL 180
           +K   E SS PV+LSKFL R+ DDG RRSAVSGKKILLK+DKSKEDKA E+KRNELLKFL
Sbjct: 121 KKGEGEGSSGPVKLSKFLNRDKDDGERRSAVSGKKILLKVDKSKEDKAAESKRNELLKFL 177

The following BLAST results are available for this feature:

BLAST of CmaCh11G011930 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh11G011930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27860.1	3.8e-30	58.92	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G27860.2	3.8e-30	58.92	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..116
None	No IPR available	PANTHER	PTHR35760	SI:CH211-22I13.2	coord: 1..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G011930.1	CmaCh11G011930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016853	isomerase activity