CmaCh11G011640 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G011640
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ribosome assembly factor mrt4
Location	Cma_Chr11: 6748491 .. 6752365 (+)
RNA-Seq Expression	CmaCh11G011640
Synteny	CmaCh11G011640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTCAGCCATCACTCAAAGACAGCCGCTTCCTTCGACGCCGTAAGCCCTCCCTCGCCCTCTTGTTCTTCCTCTCTCTTTCTCCCTCACGTAACTTACGCCGGGTACAGAAGTTATTTGCAGCGATCAAAGATGCCCAAGTCCAAGCGTGATAGACCAGGTCCGTTTTCATCGCTTTGCTCATATTCATGCCTAAATCGCTCTTCTTTTCGATACTAAAAAAATTTGGTATTTGTTAGGGTAGGTATTGTTTAGGTTTGAGATGATATTGATATCTCTTCACCAGTAATTGAGAGATTTCACACTTGTATCTTCGTTCTTACGGTAGTCCTACATGTTCATAGTACGTTTCCTGGTAGGCCAGATTTACGAAAGAATTTTGATTACTCAGTATTTTAGCTCCATATTTTTCTTCTAAGGTTCTTCCAAGTTCTAAAGAAGTATGCACTGTGTTACTTGAGCAAACATAGTGTGGAATTTGTGGGGATATCCTATTAGTGGGTTGGTTACAACTTGATGGCCTGTGTTTGTTAAAATTTGAGGAATAACTTGAGTATCTATTGTGTTAGTCTGAGATAGACAGGGTTGTAGACAAGCCTCAAGCACGTTTTCGCTGATTGTAGGAATGGCTGTAGTTTGCCTCAGAAGTTAGTTTGAGCTTTATAGTGTGATGGAAGAACCATAGTAGTTTAAGGTGTCTCCAAGGGGTGGCTGAGGTGAAAGGTTTCTATCTATATGCAAAATGTAGAGTTGCTTACAACACAGGGAGCTAAAGTTAAACACTGAGATCAATTTTTTAAATAGGAATAAGGAATATTTTTAGTAGGGTAATGAATGTTGTTAAAGAGAAACCAAACTGTGAATCTGGTTGAACTTAATGACTGCTTTAACATTAGAAATATGCTTAAATTTGTTATTTTAATTCGAGGTTTTTGTTAAACTATGGGCTAGTCTGTCTGAGATATGTTCTTGTCAAAAGTACTATGCAATTTAAGAATTTAAATGACATGTGGTGGTTGTATTCAGTGTCAAATATGTGTGGGTTTTTAGTTAATAGAGGAAAAATTCAACAATTCAGTCTACTGTCGACTGTTTTGACTAATTGTTTGCTGTTTGATGGGATAAATGCAGTTACTTTATCAAAAACCAAGAAGAAAGGAAGGGAACATAAGAAATCAATGGTGGATCTAATCAGGCAGGCTGTGGAAAATTACAACTCAATTTATGTATTCACTGTTGAGAACATGAGAAACCTCAAGTTCAAGGAACTCAGGGAGCAACTAAAGTCGTCTAGCAGGCAAGTTGTATTTTCTGACTTTTTTTATTGTATATTTTCTGCATCACTTCAAATATTAATTAGTGATGAGAATGTTACTTCCTATATGTTGTTTGATTTGTGTTTTGTTGGAAGAAAGGAGAAAATGAAAATATTGAATGGCATGTTTTAGAACTTGAATAAAAATGAATAGCATGTTCTAGGAGAAAAGATGAGACTATTTGGTAACAGGTTATGGTTACAGCATTGCTTTATGATCCTAAATGTAGTATCTGTTGATATGATTACAGAGCAACCTTCTGTCCTTGTTTTAACAAGCGTCAATCAAAAAGGTTTACAACCTTCATCGTCCTTCTTTCCCTTGTGCTTGATGTGGTCTCACCTGGGGCTGCAGCTTGTATACATTTGTTCTCTTTATTCTTTTTCCCTTTTTAAGTATGAATGATATGAAAATTATATTAACTCACCTTGGAATTATATTTTAGCCGTACATTATTGTATTTGGCCTCTGATCCTTGTCTATATTTTTGAAGTGTAGAAATGTATAAGCCTCTGGTCACTAATTGGGATATTTTGTTTGTGAACTTTGTTTAGTGCAATTTTTGAAATGATGCTGCAGTTGAGTGGCACTCTCTCTATTTCTCTAATGAAATGATTGTGACCTTATCTGACCTGACTGTACCTTACATGGATTCCCAAATTGATTTTCTTTTCTCTCATGGATAGATTGTTTTTTGGAGCAAACAAAGTCATGCAGGTTTCTCTTGGTCGAACTGCTTCCGATGAGATTCAACCAGGCCTATACAAGGTTTCTAAGGTGAACCACTTTTTCCATATTGCATATAATTCAAGTGCTCTTTTTCTTTGTAGCCTTAAGGAATTAACATCCACTCTTCTATTTTTCAGCTTCTGCATGGCAATACTGGACTTTGTTTCACAAACTTACCGAAAGAAGAGGTTGAGAGGTAAACCAGACATGCTCTAGTTTTAACATTGGCAAGCACCGCCAATAGTGATAAATTGTTAGGTTGCTATTTTGTTTTACAATTTAAATGCACATATTTAAAATTTATTCACTATGCGTTCTTTTTTTTGTTTAGAAATTGAAGTATCTGATAAATTGTAGTTTCAGTTGATTTCCATATCTATGAATACAACATTCTGAAGTTTTGATTTGGGAAAGACTGTTAAAAGTGAAACAAATTGTTTTGGTGTTGGAAAGGAACCAAAAAGAAAATGTCAAATCCTTGAAGTTGAAGTTTTAAAAATTGAAACTGGTTTGTCTTCAAGGTCAAAATAAATTTTCAACTTCATAATGTCACATGCTGATTTTTCTGTGCTAAACTCGGTTGGAAGTCCTGTTTTTGTCAGTAGTAAAATTCTCTAAATGGGTTATTTACATTTCAATTTTAAAATAAGGGATTTCTGTATTTGATTTGGTATGCATTAATGCTTGATTTAATTTTCAATGTTTTGTTCTGCAGATTATTTAACGAGTATGTGGATTATGATTATGCAAGGACTGGAAGTGAAGCCACAGAAAAGGTTTCTGCCCCTTTTGAAATAAACTTATTTTTATTTTCATCATTCTAGTACTGATGTCACTTTTTGAGTGCACTGATTCAACAAAAAGGTCCAGTATCATTTCATATCGTTAGTGTTATAACATGCATGAACTTTGTGGTTGGTCGCCTTACTGAAGTTTAATGATATTAGGTTGAGCTTAAGGAAGGTCCTCTGGAGCAGTTCAGCCATGAAATGGAGCCTTCTCTACGGAAGCTAGGATTGCCCGTTCGCTTGAACAAGGGTCGGTAAACACACTTTTTGCTTGCAAGCCCTACTTATGATAAACAAAAATTTGGTTGTAAATCATAATTGTTGAGGGAATTGCAGGTGTGGTGGAGCTTGTATCGGACTTTACTGTATGTGAGGAGGGCAAGTCTCTTTCACCAGAGTCAGCTGGCATCCTGGTTTGTATCATTTCACGACTATCTCTTTCTTTCTTTATATATATATTGAATATGAATGCCTTGTAAACGAGGTTTGAAGTAGCACTTATTGATATTGATATCGATATTTGTTTGGTTGCAGCGTGCCTTGGGGATAAGGATGGCAACTTTTCGCCTGAATTTGGTATGCAGGTGGAGTCCTGGTGAGTTTGAACTTTACATTGATGGACCAGATTATTCTGACATTGAAACTGCCTAGAAGAAGAATCCCCAACACAATATTTTCCGATTAGAATTATATATATATATATATATATATAAATGGGATGGATGGATAAATGAATGCATGGATGAATGACTCTCCCCTAGGGATTTGATGCTATAATTTGAATGGGATCGGGACTTCTCTTTTCTTCTTCTTTTGTGTAAATTATTCAAGAAATTTTGAAGGGCATGTGCCCAAATCTTCAGTTTTGTTTCTCTAGTGAGGATGAACGGATGTTACTGTGACTGGTTGGTAGATTTTGATTTGTATTATTGTCAGATCGTTGGTCTTTAAATTCTTCAAATATAGTATAGTATTATTTTATGAAATTCTGTGTGTTATAAATAAGCTTAATGTAATGAGACCGAAGAATAGATAGCGCCAGG

mRNA sequence

CATTCAGCCATCACTCAAAGACAGCCGCTTCCTTCGACGCCGTAAGCCCTCCCTCGCCCTCTTGTTCTTCCTCTCTCTTTCTCCCTCACGTAACTTACGCCGGGTACAGAAGTTATTTGCAGCGATCAAAGATGCCCAAGTCCAAGCGTGATAGACCAGTTACTTTATCAAAAACCAAGAAGAAAGGAAGGGAACATAAGAAATCAATGGTGGATCTAATCAGGCAGGCTGTGGAAAATTACAACTCAATTTATGTATTCACTGTTGAGAACATGAGAAACCTCAAGTTCAAGGAACTCAGGGAGCAACTAAAATTGTTTTTTGGAGCAAACAAAGTCATGCAGGTTTCTCTTGGTCGAACTGCTTCCGATGAGATTCAACCAGGCCTATACAAGGTTTCTAAGCTTCTGCATGGCAATACTGGACTTTGTTTCACAAACTTACCGAAAGAAGAGGTTGAGAGATTATTTAACGAGTATGTGGATTATGATTATGCAAGGACTGGAAGTGAAGCCACAGAAAAGGTTGAGCTTAAGGAAGGTCCTCTGGAGCAGTTCAGCCATGAAATGGAGCCTTCTCTACGGAAGCTAGGATTGCCCGTTCGCTTGAACAAGGGTGTGGTGGAGCTTGTATCGGACTTTACTGTATGTGAGGAGGGCAAGTCTCTTTCACCAGAGTCAGCTGGCATCCTGCGTGCCTTGGGGATAAGGATGGCAACTTTTCGCCTGAATTTGGTATGCAGGTGGAGTCCTGGTGAGTTTGAACTTTACATTGATGGACCAGATTATTCTGACATTGAAACTGCCTAGAAGAAGAATCCCCAACACAATATTTTCCGATTAGAATTATATATATATATATATATATATAAATGGGATGGATGGATAAATGAATGCATGGATGAATGACTCTCCCCTAGGGATTTGATGCTATAATTTGAATGGGATCGGGACTTCTCTTTTCTTCTTCTTTTGTGTAAATTATTCAAGAAATTTTGAAGGGCATGTGCCCAAATCTTCAGTTTTGTTTCTCTAGTGAGGATGAACGGATGTTACTGTGACTGGTTGGTAGATTTTGATTTGTATTATTGTCAGATCGTTGGTCTTTAAATTCTTCAAATATAGTATAGTATTATTTTATGAAATTCTGTGTGTTATAAATAAGCTTAATGTAATGAGACCGAAGAATAGATAGCGCCAGG

Coding sequence (CDS)

ATGCCCAAGTCCAAGCGTGATAGACCAGTTACTTTATCAAAAACCAAGAAGAAAGGAAGGGAACATAAGAAATCAATGGTGGATCTAATCAGGCAGGCTGTGGAAAATTACAACTCAATTTATGTATTCACTGTTGAGAACATGAGAAACCTCAAGTTCAAGGAACTCAGGGAGCAACTAAAATTGTTTTTTGGAGCAAACAAAGTCATGCAGGTTTCTCTTGGTCGAACTGCTTCCGATGAGATTCAACCAGGCCTATACAAGGTTTCTAAGCTTCTGCATGGCAATACTGGACTTTGTTTCACAAACTTACCGAAAGAAGAGGTTGAGAGATTATTTAACGAGTATGTGGATTATGATTATGCAAGGACTGGAAGTGAAGCCACAGAAAAGGTTGAGCTTAAGGAAGGTCCTCTGGAGCAGTTCAGCCATGAAATGGAGCCTTCTCTACGGAAGCTAGGATTGCCCGTTCGCTTGAACAAGGGTGTGGTGGAGCTTGTATCGGACTTTACTGTATGTGAGGAGGGCAAGTCTCTTTCACCAGAGTCAGCTGGCATCCTGCGTGCCTTGGGGATAAGGATGGCAACTTTTCGCCTGAATTTGGTATGCAGGTGGAGTCCTGGTGAGTTTGAACTTTACATTGATGGACCAGATTATTCTGACATTGAAACTGCCTAG

Protein sequence

MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQLKLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDYSDIETA

Homology

[Close]

BLAST of CmaCh11G011640 vs. ExPASy Swiss-Prot
Match: A4FV84 (mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 7.0e-55
Identity = 107/208 (51.44%), Postives = 146/208 (70.19%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRD+ V+L+KT KKG E K+++++ +R+ V+ Y  +++F+V NMRN K K++R   
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  K---LFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 120
           K   +FFG NKVM V+LGR+ SDE +  L++VSK L G  GL FTN  KEEV+  F +Y 
Sbjct: 61  KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVDEWFTKYT 120

Query: 121 DYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGK 180
           + DYAR G++AT  V L  GPLEQF H MEP LR+LGLP  L KGVV L+SD+ VC+EG 
Sbjct: 121 EMDYARAGNKATFTVNLDPGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 180

Query: 181 SLSPESAGILRALGIRMATFRLNLVCRW 206
            L+PE A +L+  G  MA F++++   W
Sbjct: 181 VLTPEQARVLKLFGYEMAEFKVSIKYMW 208

[Close]

BLAST of CmaCh11G011640 vs. ExPASy Swiss-Prot
Match: Q9UKD2 (mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2)

HSP 1 Score: 211.1 bits (536), Expect = 1.3e-53
Identity = 105/208 (50.48%), Postives = 143/208 (68.75%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRD+ V+L+KT KKG E K+++++ +R+ V+ Y  +++F+V NMRN K K++R   
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  K---LFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 120
           K   +FFG NKVM V+LGR+ SDE +  L++VSK L G  GL FTN  KEEV   F +Y 
Sbjct: 61  KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYT 120

Query: 121 DYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGK 180
           + DYAR G++A   V L  GPLEQF H MEP LR+LGLP  L +GVV L+SD+ VC+EG 
Sbjct: 121 EMDYARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGD 180

Query: 181 SLSPESAGILRALGIRMATFRLNLVCRW 206
            L+PE A +L+  G  MA F++ +   W
Sbjct: 181 VLTPEQARVLKLFGYEMAEFKVTIKYMW 208

[Close]

BLAST of CmaCh11G011640 vs. ExPASy Swiss-Prot
Match: Q9D0I8 (mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 2.3e-53
Identity = 106/208 (50.96%), Postives = 144/208 (69.23%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRD+ V+L+KT KKG E K+++++ +R+ V+ Y  +++F+V NMRN K K++R   
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  K---LFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 120
           K   +FFG NKVM V+LGR+ SDE +  L++VSK L G  GL FTN  KEEV   F +Y 
Sbjct: 61  KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKYT 120

Query: 121 DYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGK 180
           + D+AR G++AT  V L  GPL+QF H MEP LR+LGLP  L KGVV L+SD+ VC+EG 
Sbjct: 121 EMDFARAGNKATLTVSLDPGPLKQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGD 180

Query: 181 SLSPESAGILRALGIRMATFRLNLVCRW 206
            L+PE A IL+  G  MA F++ +   W
Sbjct: 181 VLTPEQARILKLFGYEMAEFKVIIKYMW 208

[Close]

BLAST of CmaCh11G011640 vs. ExPASy Swiss-Prot
Match: Q86HD3 (Ribosome assembly factor mrt4 OS=Dictyostelium discoideum OX=44689 GN=mrt4 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 4.9e-40
Identity = 85/215 (39.53%), Postives = 130/215 (60.47%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQ- 60
           M KSKR+  V ++K  K   E KK +V  I+  V+ Y  IY+FT ENMRN K K +R + 
Sbjct: 1   MVKSKRNVVVNMTKVTKNPGEKKKKLVSTIKDIVDQYKFIYLFTFENMRNNKLKSVRTEW 60

Query: 61  --LKLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 120
              K  FG NKV+ V LG++  DE++P L+K+++ L G  GL FTN PK++V   F  Y 
Sbjct: 61  STSKFLFGKNKVLSVGLGKSEEDELKPNLHKLTEHLEGECGLFFTNEPKDKVFEYFTNYS 120

Query: 121 DYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGK 180
           + D+ R+G  + E + +KEGP+   +H ME  LR LGLP  L  GV+ +  ++T+CE G 
Sbjct: 121 EKDFPRSGFVSEETITIKEGPIVGMTHSMETYLRGLGLPTTLKNGVIFVDREYTLCEAGV 180

Query: 181 SLSPESAGILRALGIRMATFRLNLVCRWSPGEFEL 213
           +++PE + +L+     ++ F+ ++   W+  EF L
Sbjct: 181 AVTPEQSQLLKLFNHEISEFKFHIKGFWNEDEFTL 215

[Close]

BLAST of CmaCh11G011640 vs. ExPASy Swiss-Prot
Match: Q7S302 (Ribosome assembly factor mrt4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=mrt4 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 6.2e-35
Identity = 84/233 (36.05%), Postives = 127/233 (54.51%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKR +   L++  KK RE K+ + + IR+ + NY   +VF+++NMRN   K++R++L
Sbjct: 1   MPKSKRAKVYNLTQVTKKNREQKEKLFENIRECIPNYQHCFVFSIDNMRNNYLKDVRKEL 60

Query: 61  ---KLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYV 120
              ++FFG  K+   +LG T  D    GL K+SK L G+ GL FTN    E++  F    
Sbjct: 61  NDCRIFFGKTKLTARALGTTPEDAQADGLDKLSKYLSGSVGLIFTNRDPSEIKDYFVNLT 120

Query: 121 DYDYARTGSEATEKVELKEGPLEQ------------FSHEMEPSLRKLGLPVRLNKGVVE 180
             D+AR GS AT  + +  GPL               SH +EP LR+LG+P R+ KG V 
Sbjct: 121 QVDFARAGSVATRTITIPSGPLYSTGGEVPAEHDVPVSHTLEPELRRLGMPTRMVKGKVC 180

Query: 181 L------VSDFTVCEEGKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFEL 213
           L        D+ +C+EG++L      +L+   I ++ FR+ L+  WS    E+
Sbjct: 181 LGDEAGEGDDYVICKEGETLDSRQTRLLKLFSICLSEFRVKLLAYWSAASGEV 233

[Close]

BLAST of CmaCh11G011640 vs. TAIR 10
Match: AT1G25260.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 317.4 bits (812), Expect = 9.3e-87
Identity = 160/235 (68.09%), Postives = 192/235 (81.70%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGREHK+ +V+ IR+AVE Y+S+YVF+ ENMRN+KFKE R+Q 
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKECIVNGIREAVEKYSSVYVFSFENMRNIKFKEFRQQF 60

Query: 61  ----KLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
               K F G+NKVMQV+LGR+A DE++ G+YKVSKLL G+TGL  T++PKEEVE LFN Y
Sbjct: 61  RHNGKFFLGSNKVMQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAY 120

Query: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180
            D D++RTGS A E VELKEGPLEQF+HEMEP LRKL +PVRLNKG VELV+DF VCEEG
Sbjct: 121 EDSDFSRTGSIAVETVELKEGPLEQFTHEMEPLLRKLEMPVRLNKGTVELVADFVVCEEG 180

Query: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDG------PDYSDIETA 226
           K LSP+SA ILR L ++MATF+LNL+CRWSP +FELY +        D SD+ET+
Sbjct: 181 KQLSPKSAHILRLLRMKMATFKLNLLCRWSPSDFELYREDLSELYREDLSDVETS 235

[Close]

BLAST of CmaCh11G011640 vs. TAIR 10
Match: AT3G11250.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 63.2 bits (152), Expect = 3.2e-10
Identity = 49/192 (25.52%), Postives = 90/192 (46.88%), Query Frame = 0


Query: 17  KKGREHKKSMVDL-IRQAVENYNSIYVFTVENMRNLKFKELREQLK----LFFGANKVMQ 76
           K  +  KK   D  + Q ++ Y  I V   +N+ + + + +R+ L+    +  G N +M+
Sbjct: 3   KATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMK 62

Query: 77  VSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYDYARTGSEATEK 136
            S+   + +     +  +  LL GN GL FT    +EV     +Y     AR G  A   
Sbjct: 63  RSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPID 122

Query: 137 VELKEGPLEQFSHEMEPS----LRKLGLPVRLNKGVVELVSDFTVCEEGKSLSPESAGIL 196
           V ++ G     +  ++PS     + L +P ++NKG VE+++   + ++G  +    A +L
Sbjct: 123 VVVQPG-----NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALL 182

Query: 197 RALGIRMATFRL 200
             LGIR  ++ L
Sbjct: 183 AKLGIRPFSYGL 189

[Close]

BLAST of CmaCh11G011640 vs. TAIR 10
Match: AT3G09200.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 62.8 bits (151), Expect = 4.1e-10
Identity = 49/192 (25.52%), Postives = 90/192 (46.88%), Query Frame = 0


Query: 17  KKGREHKKSMVDL-IRQAVENYNSIYVFTVENMRNLKFKELREQLK----LFFGANKVMQ 76
           K  +  KK   D  + Q ++ Y  I V   +N+ + + + +R+ L+    +  G N +M+
Sbjct: 3   KATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMK 62

Query: 77  VSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYDYARTGSEATEK 136
            S+   + +     +  +  LL GN GL FT    +EV     +Y     AR G  A   
Sbjct: 63  RSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPID 122

Query: 137 VELKEGPLEQFSHEMEPS----LRKLGLPVRLNKGVVELVSDFTVCEEGKSLSPESAGIL 196
           V ++ G     +  ++PS     + L +P ++NKG VE+++   + ++G  +    A +L
Sbjct: 123 VVVQPG-----NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALL 182

Query: 197 RALGIRMATFRL 200
             LGIR  ++ L
Sbjct: 183 AKLGIRPFSYGL 189

[Close]

BLAST of CmaCh11G011640 vs. TAIR 10
Match: AT3G09200.2 (Ribosomal protein L10 family protein )

HSP 1 Score: 50.1 bits (118), Expect = 2.8e-06
Identity = 34/112 (30.36%), Postives = 55/112 (49.11%), Query Frame = 0


Query: 92  LLHGNTGLCFTNLPKEEVERLFNEYVDYDYARTGSEATEKVELKEGPLEQFSHEMEPS-- 151
           LL GN GL FT    +EV     +Y     AR G  A   V ++ G     +  ++PS  
Sbjct: 50  LLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPG-----NTGLDPSQT 109

Query: 152 --LRKLGLPVRLNKGVVELVSDFTVCEEGKSLSPESAGILRALGIRMATFRL 200
              + L +P ++NKG VE+++   + ++G  +    A +L  LGIR  ++ L
Sbjct: 110 SFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGL 156

The following BLAST results are available for this feature:

BLAST of CmaCh11G011640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4FV84	7.0e-55	51.44	mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1	[more]
Q9UKD2	1.3e-53	50.48	mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2	[more]
Q9D0I8	2.3e-53	50.96	mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1	[more]
Q86HD3	4.9e-40	39.53	Ribosome assembly factor mrt4 OS=Dictyostelium discoideum OX=44689 GN=mrt4 PE=3 ...	[more]
Q7S302	6.2e-35	36.05	Ribosome assembly factor mrt4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-...	[more]

BLAST of CmaCh11G011640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G25260.1	9.3e-87	68.09	Ribosomal protein L10 family protein	[more]
AT3G11250.1	3.2e-10	25.52	Ribosomal protein L10 family protein	[more]
AT3G09200.1	4.1e-10	25.52	Ribosomal protein L10 family protein	[more]
AT3G09200.2	2.8e-06	30.36	Ribosomal protein L10 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043141	Ribosomal protein L10-like domain superfamily	GENE3D	3.30.70.1730		coord: 30..206 e-value: 2.1E-67 score: 228.3
IPR043141	Ribosomal protein L10-like domain superfamily	SUPERFAMILY	160369	Ribosomal protein L10-like	coord: 20..138
IPR040637	60S ribosomal protein L10P, insertion domain	PFAM	PF17777	RL10P_insert	coord: 122..192 e-value: 4.8E-23 score: 81.0
IPR001790	Ribosomal protein L10P	PFAM	PF00466	Ribosomal_L10	coord: 19..116 e-value: 1.1E-15 score: 57.6
IPR043164	50S ribosomal protein L10, insertion domain superfamily	GENE3D	3.90.105.20		coord: 121..194 e-value: 2.1E-67 score: 228.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR45841	MRNA TURNOVER PROTEIN 4 MRTO4	coord: 1..224
None	No IPR available	PANTHER	PTHR45841:SF4	RIBOSOME ASSEMBLY FACTOR MRT4	coord: 1..224
IPR033867	Ribosome assembly factor Mrt4	CDD	cd05796	Ribosomal_P0_like	coord: 21..180 e-value: 7.09216E-85 score: 247.106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G011640.1	CmaCh11G011640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor