CmaCh11G011630 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G011630
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description40S ribosomal protein S5
LocationCma_Chr11: 6736210 .. 6736896 (-)
RNA-Seq ExpressionCmaCh11G011630
SyntenyCmaCh11G011630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTATGTTTGTACTCAACTAGTGCTCACTTTTTCTGTCTTTTTATGTTCATTAGGAACCATGGCTGTTGAAGTTGATGTGGTAAACCAGGAACTGACCCAGCCTCATAATGATGTGAAGCTGTTCAACCGGTGGACCTTCGATGACGTCAATGTGAATGATATGTCTCTGGGTGATTACATTGGGGTTGCTCCTTCCAAGCATGCCACCTATGTCCCCCACACAGCTGGGAGGTACTCTGTCAAGCGGTTCCGAAAAGCTCAGTGCCCAATTGTGGAAAGGCTCACAAATTCTCTTATGATGCACGGTAGAAACAATGGGAAGAAACTTATGGCTGTCAGGATTATTAAACATGCAATGGAGATCATTCATCTTCTAACTGATCTCAACCCAATTCAAGTCATTGTTGATGCTGTTGTTAACAGTGGACCACGTGAAGACGCCACTCGAATCGGTTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTCTGCGACGTGTTAACCAGGCAATCTATCTTCTTACGACTGGTGCTCGTGAGGCTGCCTTCAGAAATATCAAAACCATTGCAGAATGCTTGGCTGATGAACTTATTAACGCAGCAAAGGGTTCATCTAACAGTTACGCCATCAAGAAAAAGGATGAGGTCGAGAGAGTTGCAAAGGCTAATCGTTGA

mRNA sequence

ATGCCTTATGTTTGTACTCAACTAGTGCTCACTTTTTCTGTCTTTTTATGTTCATTAGGAACCATGGCTGTTGAAGTTGATGTGGTAAACCAGGAACTGACCCAGCCTCATAATGATGTGAAGCTGTTCAACCGGTGGACCTTCGATGACGTCAATGTGAATGATATGTCTCTGGGTGATTACATTGGGGTTGCTCCTTCCAAGCATGCCACCTATGTCCCCCACACAGCTGGGAGGTACTCTGTCAAGCGGTTCCGAAAAGCTCAGTGCCCAATTGTGGAAAGGCTCACAAATTCTCTTATGATGCACGGTAGAAACAATGGGAAGAAACTTATGGCTGTCAGGATTATTAAACATGCAATGGAGATCATTCATCTTCTAACTGATCTCAACCCAATTCAAGTCATTGTTGATGCTGTTGTTAACAGTGGACCACGTGAAGACGCCACTCGAATCGGTTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTCTGCGACGTGTTAACCAGGCAATCTATCTTCTTACGACTGGTGCTCGTGAGGCTGCCTTCAGAAATATCAAAACCATTGCAGAATGCTTGGCTGATGAACTTATTAACGCAGCAAAGGGTTCATCTAACAGTTACGCCATCAAGAAAAAGGATGAGGTCGAGAGAGTTGCAAAGGCTAATCGTTGA

Coding sequence (CDS)

ATGCCTTATGTTTGTACTCAACTAGTGCTCACTTTTTCTGTCTTTTTATGTTCATTAGGAACCATGGCTGTTGAAGTTGATGTGGTAAACCAGGAACTGACCCAGCCTCATAATGATGTGAAGCTGTTCAACCGGTGGACCTTCGATGACGTCAATGTGAATGATATGTCTCTGGGTGATTACATTGGGGTTGCTCCTTCCAAGCATGCCACCTATGTCCCCCACACAGCTGGGAGGTACTCTGTCAAGCGGTTCCGAAAAGCTCAGTGCCCAATTGTGGAAAGGCTCACAAATTCTCTTATGATGCACGGTAGAAACAATGGGAAGAAACTTATGGCTGTCAGGATTATTAAACATGCAATGGAGATCATTCATCTTCTAACTGATCTCAACCCAATTCAAGTCATTGTTGATGCTGTTGTTAACAGTGGACCACGTGAAGACGCCACTCGAATCGGTTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTCTGCGACGTGTTAACCAGGCAATCTATCTTCTTACGACTGGTGCTCGTGAGGCTGCCTTCAGAAATATCAAAACCATTGCAGAATGCTTGGCTGATGAACTTATTAACGCAGCAAAGGGTTCATCTAACAGTTACGCCATCAAGAAAAAGGATGAGGTCGAGAGAGTTGCAAAGGCTAATCGTTGA

Protein sequence

MPYVCTQLVLTFSVFLCSLGTMAVEVDVVNQELTQPHNDVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR
Homology
[Close]
BLAST of CmaCh11G011630 vs. ExPASy Swiss-Prot
Match: Q9ZUT9 (40S ribosomal protein S5-1 OS=Arabidopsis thaliana OX=3702 GN=RPS5A PE=1 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 3.4e-97
Identity = 182/207 (87.92%), Postives = 197/207 (95.17%), Query Frame = 0 

Query: 23  AVEVDV-VNQELTQPHNDVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGRYS 82
           + E+D  + Q+LT   N+VKLFNRW+FDDV+V D+SL DYIGV PSKHAT+VPHTAGRYS
Sbjct: 4   SAEIDAEIQQQLT---NEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYS 63

Query: 83  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 142
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+V
Sbjct: 64  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 123

Query: 143 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 202
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLTTGAREAAFRNIKTIAECLADEL
Sbjct: 124 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADEL 183

Query: 203 INAAKGSSNSYAIKKKDEVERVAKANR 229
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 184 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of CmaCh11G011630 vs. ExPASy Swiss-Prot
Match: O65731 (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum OX=3827 GN=RPS5 PE=2 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 6.4e-96
Identity = 179/190 (94.21%), Postives = 186/190 (97.89%), Query Frame = 0 

Query: 39  DVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 98
           +VKLFNRW+FDDV ++D+SL DYIGV PSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN
Sbjct: 8   EVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 67

Query: 99  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVV 158
           SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTD NPIQVIVDAVVNSGPREDATRIGSAGVV
Sbjct: 68  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVV 127

Query: 159 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 218
           RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIK+IAECLADELINAAKGSSNSYAIKKKD
Sbjct: 128 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKD 187

Query: 219 EVERVAKANR 229
           E+ERVAKANR
Sbjct: 188 EIERVAKANR 197

[Close]
BLAST of CmaCh11G011630 vs. ExPASy Swiss-Prot
Match: P51427 (40S ribosomal protein S5-2 OS=Arabidopsis thaliana OX=3702 GN=RPS5B PE=1 SV=2)

HSP 1 Score: 350.1 bits (897), Expect = 1.8e-95
Identity = 180/207 (86.96%), Postives = 194/207 (93.72%), Query Frame = 0 

Query: 23  AVEVDV-VNQELTQPHNDVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGRYS 82
           A +VD  + Q LT   N+VKLFNRWT+DDV V D+SL DYIGV  +KHAT+VPHTAGRYS
Sbjct: 4   AADVDAEIQQALT---NEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYS 63

Query: 83  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 142
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+V
Sbjct: 64  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 123

Query: 143 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 202
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGAREAAFRNIKTIAECLADEL
Sbjct: 124 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADEL 183

Query: 203 INAAKGSSNSYAIKKKDEVERVAKANR 229
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 184 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of CmaCh11G011630 vs. ExPASy Swiss-Prot
Match: Q5E988 (40S ribosomal protein S5 OS=Bos taurus OX=9913 GN=RPS5 PE=2 SV=3)

HSP 1 Score: 306.2 bits (783), Expect = 3.1e-82
Identity = 152/190 (80.00%), Postives = 173/190 (91.05%), Query Frame = 0 

Query: 39  DVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 98
           D+KLF +W+ DDV +ND+SL DYI V   K+A Y+PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 16  DIKLFGKWSTDDVQINDISLQDYIAV-KEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTN 75

Query: 99  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVV 158
           S+MMHGRNNGKKLM VRI+KHA EIIHLLT  NP+QV+V+A++NSGPRED+TRIG AG V
Sbjct: 76  SMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTV 135

Query: 159 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 218
           RRQAVD+SPLRRVNQAI+LL TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD
Sbjct: 136 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 195

Query: 219 EVERVAKANR 229
           E+ERVAK+NR
Sbjct: 196 ELERVAKSNR 204

[Close]
BLAST of CmaCh11G011630 vs. ExPASy Swiss-Prot
Match: P46782 (40S ribosomal protein S5 OS=Homo sapiens OX=9606 GN=RPS5 PE=1 SV=4)

HSP 1 Score: 306.2 bits (783), Expect = 3.1e-82
Identity = 152/190 (80.00%), Postives = 173/190 (91.05%), Query Frame = 0 

Query: 39  DVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 98
           D+KLF +W+ DDV +ND+SL DYI V   K+A Y+PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 16  DIKLFGKWSTDDVQINDISLQDYIAV-KEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTN 75

Query: 99  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVV 158
           S+MMHGRNNGKKLM VRI+KHA EIIHLLT  NP+QV+V+A++NSGPRED+TRIG AG V
Sbjct: 76  SMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTV 135

Query: 159 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 218
           RRQAVD+SPLRRVNQAI+LL TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD
Sbjct: 136 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 195

Query: 219 EVERVAKANR 229
           E+ERVAK+NR
Sbjct: 196 ELERVAKSNR 204

[Close]
BLAST of CmaCh11G011630 vs. TAIR 10
Match: AT2G37270.1 (ribosomal protein 5B )

HSP 1 Score: 355.9 bits (912), Expect = 2.4e-98
Identity = 182/207 (87.92%), Postives = 197/207 (95.17%), Query Frame = 0 

Query: 23  AVEVDV-VNQELTQPHNDVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGRYS 82
           + E+D  + Q+LT   N+VKLFNRW+FDDV+V D+SL DYIGV PSKHAT+VPHTAGRYS
Sbjct: 4   SAEIDAEIQQQLT---NEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYS 63

Query: 83  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 142
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+V
Sbjct: 64  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 123

Query: 143 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 202
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLTTGAREAAFRNIKTIAECLADEL
Sbjct: 124 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADEL 183

Query: 203 INAAKGSSNSYAIKKKDEVERVAKANR 229
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 184 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of CmaCh11G011630 vs. TAIR 10
Match: AT2G37270.2 (ribosomal protein 5B )

HSP 1 Score: 355.9 bits (912), Expect = 2.4e-98
Identity = 182/207 (87.92%), Postives = 197/207 (95.17%), Query Frame = 0 

Query: 23  AVEVDV-VNQELTQPHNDVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGRYS 82
           + E+D  + Q+LT   N+VKLFNRW+FDDV+V D+SL DYIGV PSKHAT+VPHTAGRYS
Sbjct: 4   SAEIDAEIQQQLT---NEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYS 63

Query: 83  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 142
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+V
Sbjct: 64  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 123

Query: 143 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 202
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLTTGAREAAFRNIKTIAECLADEL
Sbjct: 124 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADEL 183

Query: 203 INAAKGSSNSYAIKKKDEVERVAKANR 229
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 184 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of CmaCh11G011630 vs. TAIR 10
Match: AT3G11940.1 (ribosomal protein 5A )

HSP 1 Score: 350.1 bits (897), Expect = 1.3e-96
Identity = 180/207 (86.96%), Postives = 194/207 (93.72%), Query Frame = 0 

Query: 23  AVEVDV-VNQELTQPHNDVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGRYS 82
           A +VD  + Q LT   N+VKLFNRWT+DDV V D+SL DYIGV  +KHAT+VPHTAGRYS
Sbjct: 4   AADVDAEIQQALT---NEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYS 63

Query: 83  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 142
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+V
Sbjct: 64  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 123

Query: 143 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 202
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGAREAAFRNIKTIAECLADEL
Sbjct: 124 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADEL 183

Query: 203 INAAKGSSNSYAIKKKDEVERVAKANR 229
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 184 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of CmaCh11G011630 vs. TAIR 10
Match: AT3G11940.2 (ribosomal protein 5A )

HSP 1 Score: 350.1 bits (897), Expect = 1.3e-96
Identity = 180/207 (86.96%), Postives = 194/207 (93.72%), Query Frame = 0 

Query: 23  AVEVDV-VNQELTQPHNDVKLFNRWTFDDVNVNDMSLGDYIGVAPSKHATYVPHTAGRYS 82
           A +VD  + Q LT   N+VKLFNRWT+DDV V D+SL DYIGV  +KHAT+VPHTAGRYS
Sbjct: 4   AADVDAEIQQALT---NEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYS 63

Query: 83  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVV 142
           VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLL+DLNPIQVI+DA+V
Sbjct: 64  VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIV 123

Query: 143 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 202
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGAREAAFRNIKTIAECLADEL
Sbjct: 124 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADEL 183

Query: 203 INAAKGSSNSYAIKKKDEVERVAKANR 229
           INAAKGSSNSYAIKKKDE+ERVAKANR
Sbjct: 184 INAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of CmaCh11G011630 vs. TAIR 10
Match: ATCG01240.1 (ribosomal protein S7 )

HSP 1 Score: 56.2 bits (134), Expect = 3.9e-08
Identity = 48/136 (35.29%), Postives = 74/136 (54.41%), Query Frame = 0 

Query: 95  RLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGP--REDATRI 154
           RL N L+     +GKK +A +II  A++ I   T+ NP+ V+  A+    P     A R+
Sbjct: 21  RLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRV 80

Query: 155 GSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSY 214
           G  G   +  ++I   +    AI  L   +R+   RN   +A  L+ EL++AAKGS +  
Sbjct: 81  G--GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRN---MAFKLSSELVDAAKGSGD-- 140

Query: 215 AIKKKDEVERVAKANR 229
           AI+KK+E  R+A+ANR
Sbjct: 141 AIRKKEETHRMAEANR 149

The following BLAST results are available for this feature:
BLAST of CmaCh11G011630 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZUT93.4e-9787.9240S ribosomal protein S5-1 OS=Arabidopsis thaliana OX=3702 GN=RPS5A PE=1 SV=1[more]
O657316.4e-9694.2140S ribosomal protein S5 (Fragment) OS=Cicer arietinum OX=3827 GN=RPS5 PE=2 SV=1[more]
P514271.8e-9586.9640S ribosomal protein S5-2 OS=Arabidopsis thaliana OX=3702 GN=RPS5B PE=1 SV=2[more]
Q5E9883.1e-8280.0040S ribosomal protein S5 OS=Bos taurus OX=9913 GN=RPS5 PE=2 SV=3[more]
P467823.1e-8280.0040S ribosomal protein S5 OS=Homo sapiens OX=9606 GN=RPS5 PE=1 SV=4[more]
BLAST of CmaCh11G011630 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G37270.12.4e-9887.92ribosomal protein 5B [more]
AT2G37270.22.4e-9887.92ribosomal protein 5B [more]
AT3G11940.11.3e-9686.96ribosomal protein 5A [more]
AT3G11940.21.3e-9686.96ribosomal protein 5A [more]
ATCG01240.13.9e-0835.29ribosomal protein S7 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000235Ribosomal protein S5/S7PIRSFPIRSF002122RPS7p_RPS7a_RPS5e_RPS7ocoord: 10..228
e-value: 1.4E-39
score: 134.0
IPR000235Ribosomal protein S5/S7PANTHERPTHR11205RIBOSOMAL PROTEIN S7coord: 22..228
IPR023798Ribosomal protein S7 domainPFAMPF00177Ribosomal_S7coord: 82..228
e-value: 7.1E-37
score: 126.4
IPR005716Ribosomal protein S5/S7, eukaryotic/archaealTIGRFAMTIGR01028TIGR01028coord: 40..228
e-value: 9.1E-90
score: 297.3
IPR005716Ribosomal protein S5/S7, eukaryotic/archaealCDDcd14867uS7_Eukaryotecoord: 41..228
e-value: 3.15064E-138
score: 383.057
IPR036823Ribosomal protein S7 domain superfamilyGENE3D1.10.455.10Ribosomal protein S7 domaincoord: 21..228
e-value: 6.0E-96
score: 321.8
IPR036823Ribosomal protein S7 domain superfamilySUPERFAMILY47973Ribosomal protein S7coord: 41..228
NoneNo IPR availablePANTHERPTHR11205:SF3640S RIBOSOMAL PROTEIN S5coord: 22..228
IPR020606Ribosomal protein S7, conserved sitePROSITEPS00052RIBOSOMAL_S7coord: 94..120

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G011630.1CmaCh11G011630.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003729 mRNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding