CmaCh11G011590 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G011590
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionlamin-like protein
LocationCma_Chr11: 6707852 .. 6709610 (+)
RNA-Seq ExpressionCmaCh11G011590
SyntenyCmaCh11G011590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAATAATGGCGGTCAGTAGATCCATTAAGCAAACTCTTAATTAATCTTCATAATCACTAATCCCCTCCCCACCCATTTAAATAAAACCTCAAACCAGACCCTTCTAGACTACGCTAAAAATACAGAGCTATGGAGGTTCTAAGAAGGGTCAGCGGCGGTGGACTGTTAGCGGCGGTGCTGCTGCTGCTGGCGGCGGCGGTGTCGGAAGTTTCAGCTAAACGGTGGACTGTTGGTGATAACATGGGGTGGACGACCAATGTGAACTACACTGTCTGGGCTGAAGGGAAGCACTTCTACTATGACGACTGGCTCTGTAAGCACTTTTATCTTTAGATCTGTTAATGGTGTTTGGATTTGTAGCTGATAATTTGGATTTTGGTTAGTTTTGAGGAGAGATTTTGTGGGTTTTTGTCGGATTTTGATGTTCTTGATTCTGTTTGGCTGCTGAGAAAATTGGTGTAAGAAGTAGGAAAATGAAATTGGTTCTTGATGTTCTTGGTTCTGCGAATTTCTGTGTTTGATTGTTCTTGTCCCTTAGCTTGAGATTTGGACTAGGTTTTAGAATCTGGATTTGATGCAAACCAATACAGGTTCTTTCAACATGTTTTGTTCTCGGTTATCAAATCATTTAGAGAAATCTGCTAAGATTTGGTTCGTTACTAGCAAATGAGCTGAAAAGAAAGTTCCAACTCGCATAATCTCTTGGTCGCTCTCGTTTTGATGTAATGTCGGTTCATCCATGTATCCCTTTGCACATGCACGTATGTACATTACATCGTAATGATCTATCGAGTATTATATGAGAAAAAACTGTCAAAGATTGAAAGTATCGGGTCGAAATATGGTTAGTTACTCGAACTAGTTCGACGAGGATGTCGGGATTATAGCTAATTTGGTCTTTGTTGTTAGTTTTTGTGTACGACAGGAACCAAATGGATGTGTTGGAGGTGAACAAGACAAACTATGAGGCTTGCAATTCTGAGAATCCACTAAAAAACTTCACCACAGGAGCTGGAAGAGATGTTGTTCATTTGAATGTAACCAGACCTTATTACTTCATAAGTGGCAAAGGGTTTTGCTATGGAGGCATGAAGCTCGCTATCAATGTTGAGCACCTACCGCCCCCGCCCTCGAGCTCACCCTTGAATGAGAAGAGCAGTGCTCCAAGATCAACCCACATCGGCCACACCCCGTTCGTTTTAACCGCTGTTTTTGCAGCTGCTCGGGCCCTGATCTGGTAAACCACCGGTGTTGTTGATTGATATTGAAACAGAGGAGATCTTGCTTCACCAATTTGTGCAAGGAAGATCTAGTTAGTCATTGAATCCAGTTTCTTTGTGTTATCTTGTTGATTTAAAAATTTGTTGTTGTTGTTGTTGTTCTTGATGTTCTTGATGGGTGGTGGGTATTAAACTCATAGGGGTTGAGATTTGATAATACTCATAATTTATTTTGGCCATTGAAAATGGGTTTGGTTGCAGCAAGGGGCAAGCCACCACCACCAACCATGTGAGTATAGATTCTTCTGTCTTTTATGTTCATTAAATGAATAGATTGCTAATTTGGAAAAGAAAGCAATGTTTGTTGACTGGGTCCACAATCCAGCCCATTAACCCTTCCCTTTGCCATACGTACTCGGGTGTTGTTTGGTTCGGTTCGGTTTAATTTGGTTTGATTTGATTTTCGCAGCAGGTTTGGTTTGTGCTTAGATTTTAATTTTTTTTTAAAAATTTATAATCTAAATCTAGGTTAAGG

mRNA sequence

AAAAAAATAATGGCGGTCAGTAGATCCATTAAGCAAACTCTTAATTAATCTTCATAATCACTAATCCCCTCCCCACCCATTTAAATAAAACCTCAAACCAGACCCTTCTAGACTACGCTAAAAATACAGAGCTATGGAGGTTCTAAGAAGGGTCAGCGGCGGTGGACTGTTAGCGGCGGTGCTGCTGCTGCTGGCGGCGGCGGTGTCGGAAGTTTCAGCTAAACGGTGGACTGTTGGTGATAACATGGGGTGGACGACCAATGTGAACTACACTGTCTGGGCTGAAGGGAAGCACTTCTACTATGACGACTGGCTCTTTTTTGTGTACGACAGGAACCAAATGGATGTGTTGGAGGTGAACAAGACAAACTATGAGGCTTGCAATTCTGAGAATCCACTAAAAAACTTCACCACAGGAGCTGGAAGAGATGTTGTTCATTTGAATGTAACCAGACCTTATTACTTCATAAGTGGCAAAGGGTTTTGCTATGGAGGCATGAAGCTCGCTATCAATGTTGAGCACCTACCGCCCCCGCCCTCGAGCTCACCCTTGAATGAGAAGAGCAGTGCTCCAAGATCAACCCACATCGGCCACACCCCGTTCGTTTTAACCGCTGTTTTTGCAGCTGCTCGGGCCCTGATCTGGTAAACCACCGGTGTTGTTGATTGATATTGAAACAGAGGAGATCTTGCTTCACCAATTTGTGCAAGGAAGATCTAGTTAGTCATTGAATCCAGTTTCTTTGTGTTATCTTGTTGATTTAAAAATTTGTTGTTGTTGTTGTTGTTCTTGATGTTCTTGATGGGTGGTGGGTATTAAACTCATAGGGGTTGAGATTTGATAATACTCATAATTTATTTTGGCCATTGAAAATGGGTTTGGTTGCAGCAAGGGGCAAGCCACCACCACCAACCATGTGAGTATAGATTCTTCTGTCTTTTATGTTCATTAAATGAATAGATTGCTAATTTGGAAAAGAAAGCAATGTTTGTTGACTGGGTCCACAATCCAGCCCATTAACCCTTCCCTTTGCCATACGTACTCGGGTGTTGTTTGGTTCGGTTCGGTTTAATTTGGTTTGATTTGATTTTCGCAGCAGGTTTGGTTTGTGCTTAGATTTTAATTTTTTTTTAAAAATTTATAATCTAAATCTAGGTTAAGG

Coding sequence (CDS)

ATGGAGGTTCTAAGAAGGGTCAGCGGCGGTGGACTGTTAGCGGCGGTGCTGCTGCTGCTGGCGGCGGCGGTGTCGGAAGTTTCAGCTAAACGGTGGACTGTTGGTGATAACATGGGGTGGACGACCAATGTGAACTACACTGTCTGGGCTGAAGGGAAGCACTTCTACTATGACGACTGGCTCTTTTTTGTGTACGACAGGAACCAAATGGATGTGTTGGAGGTGAACAAGACAAACTATGAGGCTTGCAATTCTGAGAATCCACTAAAAAACTTCACCACAGGAGCTGGAAGAGATGTTGTTCATTTGAATGTAACCAGACCTTATTACTTCATAAGTGGCAAAGGGTTTTGCTATGGAGGCATGAAGCTCGCTATCAATGTTGAGCACCTACCGCCCCCGCCCTCGAGCTCACCCTTGAATGAGAAGAGCAGTGCTCCAAGATCAACCCACATCGGCCACACCCCGTTCGTTTTAACCGCTGTTTTTGCAGCTGCTCGGGCCCTGATCTGGTAA

Protein sequence

MEVLRRVSGGGLLAAVLLLLAAAVSEVSAKRWTVGDNMGWTTNVNYTVWAEGKHFYYDDWLFFVYDRNQMDVLEVNKTNYEACNSENPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAINVEHLPPPPSSSPLNEKSSAPRSTHIGHTPFVLTAVFAAARALIW
Homology
BLAST of CmaCh11G011590 vs. ExPASy Swiss-Prot
Match: Q39131 (Lamin-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g15350 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.7e-43
Identity = 79/141 (56.03%), Postives = 108/141 (76.60%), Query Frame = 0

Query: 12  LLAAVLL--LLAAAVSEVSAKRWTVGDNMGWTTNVNYTVWAEGKHFYYDDWLFFVYDRNQ 71
           L+ AV+L  L+AA +  V+AK++TVG+N  W  N+NYT+WA+GKHFY  DWL+FV+DRNQ
Sbjct: 7   LITAVVLAFLMAAPMPGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQ 66

Query: 72  MDVLEVNKTNYEACNSENPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAINVE 131
            ++LEVNKT+YE C +++P++N+T GAGRD+V LN T+ YY + GKG CYGGMKL++ VE
Sbjct: 67  HNILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVE 126

Query: 132 HLPPPPSSSPLNEKSSAPRST 151
            LPPPP S+P+    S    T
Sbjct: 127 KLPPPPKSAPVKNIGSVSMVT 147

BLAST of CmaCh11G011590 vs. ExPASy Swiss-Prot
Match: Q96316 (Uclacyanin-3 OS=Arabidopsis thaliana OX=3702 GN=UCC3 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.2e-15
Identity = 60/146 (41.10%), Postives = 77/146 (52.74%), Query Frame = 0

Query: 10  GGLLAAVLLLLAAAVSEVSAKRWTVGDNMGWTTNVNYTVWAEGKHFYYDDWLFFVYDRNQ 69
           G  +AA LLL  AAV  V A  + VGD  GWT+N++YTVW  GK F   D L FVY  + 
Sbjct: 2   GSTVAAALLLFLAAVPAVFAATFKVGDISGWTSNLDYTVWLTGKTFRVGDTLEFVYGLSH 61

Query: 70  MDVLEVNKTNYEACNSENPLKNFTTGAGRDVVHLNVTRPYYFISGK-GFCYGGMKLAINV 129
             V  V+K  Y+ C+S    +NF  G  +  + L      +F+    G C  GMKLA+ V
Sbjct: 62  -SVSVVDKAGYDNCDSSGATQNFADGDTK--IDLTTVGTMHFLCPTFGHCKNGMKLAVPV 121

Query: 130 EHLPPPPS--SSPLNEKS--SAPRST 151
               P PS  SSP +  S  S+P ST
Sbjct: 122 LAAAPSPSTPSSPPSTPSTPSSPPST 144

BLAST of CmaCh11G011590 vs. ExPASy Swiss-Prot
Match: Q9T076 (Early nodulin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27520 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-12
Identity = 48/138 (34.78%), Postives = 70/138 (50.72%), Query Frame = 0

Query: 16  VLLLLAAAVSEVSAKRWTVGDNMGWTTN--VNYTVWAEGKHFYYDDWLFFVYDRNQMDVL 75
           +LL L+   +  +A+++ VG +  W TN   NY  W+    F   D L+F Y +    VL
Sbjct: 15  ILLSLSTLFTISNARKFNVGGSGAWVTNPPENYESWSGKNRFLVHDTLYFSYAKGADSVL 74

Query: 76  EVNKTNYEACNSENPLKNFTTGAGRDVVHLNVTRPYYFISG-KGFCYGGMKLAINV---- 135
           EVNK +Y+ACN++NP+K    G     + L+   P+YFISG +  C  G KL + V    
Sbjct: 75  EVNKADYDACNTKNPIKRVDDGDSE--ISLDRYGPFYFISGNEDNCKKGQKLNVVVISAR 134

Query: 136 -------EHLPPPPSSSP 140
                   H   P SS+P
Sbjct: 135 IPSTAQSPHAAAPGSSTP 150

BLAST of CmaCh11G011590 vs. ExPASy Swiss-Prot
Match: Q9SK27 (Early nodulin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At2g25060 PE=2 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-11
Identity = 49/138 (35.51%), Postives = 74/138 (53.62%), Query Frame = 0

Query: 12  LLAAVLLLLAAAVSEVSAKRWTVGDNMG-W----TTNVNYTVWAEGKHFYYDDWLFFVYD 71
           + + + L   AA +EV     TVG   G W    +++ ++T WA+   F   D++ F Y+
Sbjct: 16  IFSLIFLFSLAAANEV-----TVGGKSGDWKIPPSSSYSFTEWAQKARFKVGDFIVFRYE 75

Query: 72  RNQMDVLEVNKTNYEACNSENPLKNFTTGAGRDVVHLNVTRPYYFISG-KGFCYGGMKLA 131
             +  VLEV K  Y +CN+ NPL N+T G  +  V L+ + P+YFISG  G C  G KL+
Sbjct: 76  SGKDSVLEVTKEAYNSCNTTNPLANYTDGETK--VKLDRSGPFYFISGANGHCEKGQKLS 135

Query: 132 ---INVEHLPPPPSSSPL 141
              I+  H    P+ SP+
Sbjct: 136 LVVISPRHSVISPAPSPV 146

BLAST of CmaCh11G011590 vs. ExPASy Swiss-Prot
Match: A0A072U307 (Blue copper protein 1b OS=Medicago truncatula OX=3880 GN=BCP1B PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 49/141 (34.75%), Postives = 76/141 (53.90%), Query Frame = 0

Query: 12  LLAAVLLLLAAAVSEVSAKRWTVGDNMGWTTNVNYTVWAEGKHFYYDDWLFFVYDRNQMD 71
           L+ ++ ++L ++V+ ++A  + VGD+ GWT + +YT WA+ K F   D L F YD ++ +
Sbjct: 8   LILSISMVLLSSVA-IAATDYIVGDDKGWTVDFDYTQWAQDKVFRVGDNLVFNYDPSRHN 67

Query: 72  VLEVNKTNYEACNSENPLKNFTTGAGRDVVHLNVT-RPYYFISGKGFCYG-GMKLAINV- 131
           V +VN T +++C    P KN     G+D++ L    R +Y       C    MKL I V 
Sbjct: 68  VFKVNGTLFQSCTF--PPKNEALSTGKDIIQLKTEGRKWYVCGVADHCSARQMKLVITVL 127

Query: 132 -EHLP---PPPSSSPLNEKSS 146
            E  P   PPPSS   +  SS
Sbjct: 128 AEGAPAPSPPPSSDAHSVVSS 145

BLAST of CmaCh11G011590 vs. TAIR 10
Match: AT3G01070.1 (early nodulin-like protein 16 )

HSP 1 Score: 181.4 bits (459), Expect = 6.1e-46
Identity = 89/158 (56.33%), Postives = 115/158 (72.78%), Query Frame = 0

Query: 12  LLAAVLLLLAAAVSEVSAKRWTVGDNMGWTTNVNYTVWAEGKHFYYDDWLFFVYDRNQMD 71
           L+A  +L    A + V+AKRWTVGDN  W  N+NYT+WA+ KHFY DDWL+FVY+RNQ +
Sbjct: 7   LVAGAVLAFLLAATNVTAKRWTVGDNKFWNPNINYTIWAQDKHFYLDDWLYFVYERNQYN 66

Query: 72  VLEVNKTNYEACNSENPLKNFTTGAGRDVVHLNVTRPYYFISGK-GFCYGGMKLAINVEH 131
           V+EVN+TNY +CN  NP+ N++ GAGRD+VHLNVTR YY ISG  G CYGGMKLA+ VE 
Sbjct: 67  VIEVNETNYISCNPNNPIANWSRGAGRDLVHLNVTRHYYLISGNGGGCYGGMKLAVLVEK 126

Query: 132 LPPPPSSSPLNEKSSAPRSTHIGHTPF---VLTAVFAA 166
            PPPP+++P   K+SA R+  +    +   +  AVFAA
Sbjct: 127 PPPPPAAAP--NKNSARRTFSVSGFAYQFLIPVAVFAA 162

BLAST of CmaCh11G011590 vs. TAIR 10
Match: AT5G15350.1 (early nodulin-like protein 17 )

HSP 1 Score: 175.6 bits (444), Expect = 3.3e-44
Identity = 79/141 (56.03%), Postives = 108/141 (76.60%), Query Frame = 0

Query: 12  LLAAVLL--LLAAAVSEVSAKRWTVGDNMGWTTNVNYTVWAEGKHFYYDDWLFFVYDRNQ 71
           L+ AV+L  L+AA +  V+AK++TVG+N  W  N+NYT+WA+GKHFY  DWL+FV+DRNQ
Sbjct: 7   LITAVVLAFLMAAPMPGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQ 66

Query: 72  MDVLEVNKTNYEACNSENPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAINVE 131
            ++LEVNKT+YE C +++P++N+T GAGRD+V LN T+ YY + GKG CYGGMKL++ VE
Sbjct: 67  HNILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVE 126

Query: 132 HLPPPPSSSPLNEKSSAPRST 151
            LPPPP S+P+    S    T
Sbjct: 127 KLPPPPKSAPVKNIGSVSMVT 147

BLAST of CmaCh11G011590 vs. TAIR 10
Match: AT4G12880.1 (early nodulin-like protein 19 )

HSP 1 Score: 150.2 bits (378), Expect = 1.5e-36
Identity = 70/130 (53.85%), Postives = 95/130 (73.08%), Query Frame = 0

Query: 12  LLAAVLL--LLAAAVSEVSAKRWTVGDNMGWTTNVNYTVWAEGKHFYYDDWLFFVYDRNQ 71
           L++AV+L  L+AA + EV+AK++ VGD   W  N+NYT+WA+GKHFY  DWL+FV+ R+Q
Sbjct: 7   LISAVVLAFLVAAPIPEVTAKKYLVGDKKFWNPNINYTLWAQGKHFYVGDWLYFVFYRDQ 66

Query: 72  MDVLEVNKTNYEACNSENPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAINVE 131
            ++LEVNK +YE C S  P++N+T GAGRD+V L  TR YY + G+G C  GMKL + VE
Sbjct: 67  HNILEVNKADYEKCISNRPIRNYTRGAGRDIVPLYETRRYYLLDGRGGCVQGMKLDVLVE 126

Query: 132 HLPPPPSSSP 140
             PPPP  +P
Sbjct: 127 TPPPPPPFTP 136

BLAST of CmaCh11G011590 vs. TAIR 10
Match: AT2G27035.1 (early nodulin-like protein 20 )

HSP 1 Score: 105.5 bits (262), Expect = 4.2e-23
Identity = 55/134 (41.04%), Postives = 81/134 (60.45%), Query Frame = 0

Query: 12  LLAAVLLLLAAAVSEVSAKRWTVGDNMGWTTNVNYTVWAEGKHFYYDDWLFFVYDRNQMD 71
           L+   +++L   V   S+     G    W ++VN++ WA  + FY  DWL+F ++R + +
Sbjct: 9   LVYVTVMILIIVVEVESSLHRVGGGRYTWNSDVNFSDWANHQRFYSGDWLYFGFNRTRHN 68

Query: 72  VLEVNKTNYEACNSENPLKNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAINVEHL 131
           +L+VNK++YE C   + + N T G GRDV  L   +PYYFI G+G+C  GMKLAI V  L
Sbjct: 69  ILQVNKSSYEQCVDNDYIFNITRG-GRDVFQLLEPKPYYFICGRGYCLKGMKLAITV--L 128

Query: 132 PPPPSSSPLNEKSS 146
           P PP S+P N  S+
Sbjct: 129 PQPPPSAPTNFTST 139

BLAST of CmaCh11G011590 vs. TAIR 10
Match: AT4G12880.2 (early nodulin-like protein 19 )

HSP 1 Score: 92.0 bits (227), Expect = 4.8e-19
Identity = 43/85 (50.59%), Postives = 59/85 (69.41%), Query Frame = 0

Query: 55  FYYDDWLFFVYDRNQMDVLEVNKTNYEACNSENPLKNFTTGAGRDVVHLNVTRPYYFISG 114
           F+++  L FV+ R+Q ++LEVNK +YE C S  P++N+T GAGRD+V L  TR YY + G
Sbjct: 14  FFFNFSLNFVFYRDQHNILEVNKADYEKCISNRPIRNYTRGAGRDIVPLYETRRYYLLDG 73

Query: 115 KGFCYGGMKLAINVEHLPPPPSSSP 140
           +G C  GMKL + VE  PPPP  +P
Sbjct: 74  RGGCVQGMKLDVLVETPPPPPPFTP 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q391314.7e-4356.03Lamin-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g15350 PE=2 SV=1[more]
Q963163.2e-1541.10Uclacyanin-3 OS=Arabidopsis thaliana OX=3702 GN=UCC3 PE=2 SV=1[more]
Q9T0761.9e-1234.78Early nodulin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27520 PE=1 S... [more]
Q9SK272.1e-1135.51Early nodulin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At2g25060 PE=2 S... [more]
A0A072U3071.1e-1034.75Blue copper protein 1b OS=Medicago truncatula OX=3880 GN=BCP1B PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT3G01070.16.1e-4656.33early nodulin-like protein 16 [more]
AT5G15350.13.3e-4456.03early nodulin-like protein 17 [more]
AT4G12880.11.5e-3653.85early nodulin-like protein 19 [more]
AT2G27035.14.2e-2341.04early nodulin-like protein 20 [more]
AT4G12880.24.8e-1950.59early nodulin-like protein 19 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003245Phytocyanin domainPFAMPF02298Cu_bind_likecoord: 40..122
e-value: 4.8E-21
score: 74.6
IPR003245Phytocyanin domainPROSITEPS51485PHYTOCYANINcoord: 30..130
score: 35.236485
IPR008972CupredoxinGENE3D2.60.40.420coord: 28..131
e-value: 1.8E-30
score: 107.2
IPR008972CupredoxinSUPERFAMILY49503Cupredoxinscoord: 29..128
NoneNo IPR availablePANTHERPTHR33021:SF231LAMIN-LIKE PROTEINcoord: 13..167
IPR039391PhytocyaninPANTHERPTHR33021BLUE COPPER PROTEINcoord: 13..167

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G011590.1CmaCh11G011590.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
cellular_component GO:0046658 anchored component of plasma membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0009055 electron transfer activity