CmaCh11G011290 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G011290
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Protein YIP
Location	Cma_Chr11: 6416596 .. 6422274 (-)
RNA-Seq Expression	CmaCh11G011290
Synteny	CmaCh11G011290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGAAAACTTAATTCAGTCTGGAACACGGAGATAGATCTCTGAGAAGACCCAGACGAAGAGGGAGAGGAAGAAAGAAGACGGAGAAGATGATGTCCGGTGGTAACTATACGACTATAGACAACCAAAATGTTTCAGGAGCTGTGCCTGTAAGCTTCTTCTCCTTTAGCTTTCTTTACCGTTTTTGGTTTTTGAAGTGAAGATATCGAATCTGCTGCATTTCTTATCCAATGATATTCCACTGTTGTCGAATCCGATCCATTTGATTGATTTCTCCACGTTCTGCGTTTTTTTCTCTCCAGGCCGTTCCAGATCAGGGACAAATAACTGTGAAATTCAATGGTACGTAATTTCTTATTTCTGATACCGTTTTATGGATTCTGAGAAAGTATGGGCGAATAAAGAAAAGGTTTGGAGGTTAGTGTTAAGTTGTGTGTGTGCGCGAGTGGAATTATAAGCCACTTCAAAATTCTTATGTGCTGAATTTTTCCGGTTCGTTGGCTTACCGGACAACTATAGGTAGGAAAAATAATCTATGCTTCTTGTTGGAAGTTTATGCTCTTTAGGATCCAAATTTGGTGTGTGATTTGAATGAAATTTGAAAACCTGGTGGTTTAAGTTGAGCATAGCAGACTCGCCGGTGCTAGATCTAAAGAATCTTTTAATAGACATTTTGATTTGAAAAATGGAAATGGATTTAATATTAGTTTTAACGAGGCCAGAAGCATTTCTGAAAGAAATTTTGACTAAGATCTGGCATTGCAGGAATGATATAGAATTAAATACTGGAGTGAAATTTTAATTTAATTGTAAATTATGAAGATTGAGGTCAAGTATTAAAGTTTCATCTTGATCCACTGACTCTGTGTTGTTTTTATTTTCTATTTGTTGCAAGAGGATACAATAACTGGTTGATTTATTATTGTAGACTCAAGTCTTCAAACATTTCCTCCTTCTGGAACTCAAGGAAAGATCACTGGTGGTTCCCAGCCTCCTCGTGATGCTGATGGTATTTAAAGATCTTTCTTTTATCTTCTAGTTTAATATTGCATATTCAAATTAGGTATGAGAAGGTGATTTTACTGTAAATCTCCATAGGTTTTCCACTGATCCAGAAAAAAGACCGATGATATCTTGTTCTGGTAGACTTAGATTGAGAGGCATTACAAATGTATCACTTACCCAATATGATGCGCGAGCAGATGAGTAGATGGTTTTGTAAATTAGTGAAGGGTCCTTGGTGGTCTGAGCACTCAAAATTTGTTTACTATATCATGAAGATAGTTCCTTATTACCTACAGACAACTTTCTCAGTTCGTGTCTAAAGTAGTTGTAGATAATGAACTTCCCATTATATTATTGTTACAATCTTCTGGGACTTCTGTAACCCTTGGCTTTTGCATCTGTATACTTTATGTTAATTTATGTTTCATTTGGCATGGTGGTTAGATTGCTTTTTAGTTGAGAAGTTCACGACATGATCTCATCAAGATGCATCTCACTTTAACGGGCTAATGATATCCTCAGTTTGACATAATGCAATCAGAACTTATCAGATTTATGGGCAATTGATAATTATGTTGTAGTTCATTAAGGGGTCATAGGACTTCATTAAACTGGGAAAGACATGGGTTTATTTGTGCCATGAAAAGAGAATAAATTGAATGTTTATTTCAATTTTGTTTCTGTTTTGACATACAGGCGATATGTATATAGATATATTTCTAGGGTAACAACATTATTTTCTACCAGAGCCGGTGAAGCAGCTGATCGTACCTTGACTTGTATGATATATAATAAGGGTTTTAGTTTGAGCTAATAGGGAAGTTTATCTGATGCAGATACATTTTCAAAACCAATCTCTGGCTCTGATGAAACCCCCCAACAAGGTGGCTGGCTTCGGACCTTTGCAATTTCTTCCTACAAACAATATTTTGATGTCGATACTTCAGATGTTCTAGAGAGGATCAAAGATTCACTTTTTCCATTCAGAGGAACTTTTAATGAGAGGACAGCTGACACTCCAGATCTGTAAGTTGTATAACCGCACTAATGTGTCATCTCACTGAATATTGACTGTTGCTCATTATTGCAGTATGTTACTCAAATATTTACCTTTGAAAAGATAATTTCCGTGGGTTTGGGTTTGAATTTTTTGTAGACAATGTACTTTGTAGAAGTTTTCCAAACGATAAAAGAGTTAAATTTTTAATTGTAACTATAAATGGTTGCCTTAAGTTTCATGAGGAAGTTTTCTCTAGATGTTGACTTCACTAATGTTCCGTAAAGAGTTTGGGAAAAGAAATCGTACCAATAGTCATTCATTGTGTGAACTCAAGTTGAGTATATACTTTCTTGGCAGTTGCTGATTGCTATTTTTAAAGAGTTTTTCTTGTTCTGTTAGACTTAGATTGAGACAGAATGTTCTTTCAGACTTCACTTTTTTTCTTTCCCTTTTGATAAGAATCCACGTTTTATGATACTTGTTCATTACAAGTGCAATACATGTGAAATATTCCATTTAAGTTTTGGTTTTTATACAAAATAATTGTGCAATTCTGATCTATGTGAAATTTTGTGTGTTAAATAAGCGGTTCTTAATGAGGTTCTTACTTCAAATCATTTAACAGTTATTTGGTTAATACAATTCTGATGTCTATAAAAGAAATTATTTAACCCTTAGCTAAAAGTAAGCTCTTGATGAATGTAGATGTGGTCTTTATATCATATACACGTATATTCATGGACTTATTATAGAAATAAAGCTTGAAGTTAACTAACGACCTGCTGGTTAATATCAATACTTAAAGAGTCTTCTTGTTTTCTTTTAATAAATGGCCACAAAGGAAGTAGCTATGGAACAAGCTCCAAATTAATAATGATATACATACTTTTATACCTGATAATGTATAGACTTATAAAATTTAAAAGTTAACGACTCGTAAACAATAATAATAAAATCAAAGACGAGTCTTCAGAAATCCAATGTTTGTACTCTTAATGTTGCATATTTTAGTAAAACTACAATACAATAAGTATTTAACAACATAATTAATATTGAAGTATTGTTGTGATTGGAAAAGGCTAAACTTAACTTTTACACTTTAGAATTAGGGTAATTTAACTAATATTAACATGTACAAGTATAAAGGAAAGAAATAATTGAATGAATGGGCACCTTTGGTAATTTATGTGAAGAGATGGAACAAAATAGTCCAATTATGACTCTGTATCATTCACCAATAAAAAAAAATGTTGAAGGTGACAGAACAGTTAAAAAAAACAAATGAACCTCTTTAAAGAAAGGAATTCAAAATTATGGTAAACTCTTCAGTTTATCAATATAAAAACAATCCTGCAAACGCACTTAATATTCCCGTGTATGTCTATAAAACTCTTCTTTCTTTTGCTCCAGAATTTGCTCTTTCTGTAATGCTTTCTTAACTCCATTTGCTTGATGACTTTGTTTATAATGGTAACGAGGGAAATTATTTTATCCCGAAGGCTCATGCTCTTTGATCATAATTCATTTTCTCATGCAGATATGGTCCATTTTGGATATGTACTACGTTGATATTTGTGGCTGCTTCTATTGGAACTTTTGTAACATACGTGGCACACAAGATACATAAAAAAGAATGGAACTACGACATAAATTTGGTAACCTGGTCTGCTGGTTTGTTCTATGGCTATGTTACCATTGTTCCTCTTGGACTATATGTAATCCTCAAGTACTTCTCGGTGCCTTCTGGCCTTGTTCAGCTCTTATGTCTCTATGGCTACTCTTTATTTGTATTCATCCCGGCACTGGTAAGTTTAATTAATTAGTCCATGATCAATACTATTACTTACTACAAATTACATGTTCAAAATTTTGTCCCTCTTGAAATCACCCGTCCTTCCCATTCCCATTATGAAAAAAAAAACAAGTACAGTAAGCAGTAGTTCTCAAATGCATCTTTGTAGTTCAATATGTTCATAGTGCCTCATCTTTTAAGAAAAATGATCATAATTTCTTTATGCTTGTGTTGTTTAATAATTAGGAAGCATACAACTCCTTTCATTTTCTCTTACTTTCTTTCTGGTACAACATTTGACATGGTTTCGTGTCTGGTGTCACTCTCTCATTTGCTTCTTACATGTTTGTTGGGTAAATGAATTTCCTTAGGTTTGTGATGTTTGTCTGTCCCATCAACACAGAAGTTAGAGTAAATAAGGCAGGAGTACGTTTTTTTGTCTATTATCAACCATGTGAGTATGAAGGATCATTTTATAGACTAGGGGTACCTGTATAGAGTTAACCATGATGGATTGGCATGACGGTCAATAAGGGCCCTGTGAATAGTAAGGGCTAAAATGAAATGAGTTTAAATTATTGTAGACATCTACTTAGGATTTAATATCCTACGAGTTTTCTTTGCAACCTAATAGTAGGTTTCAATGGTTACCCATGAGCATAGTCAAGGTCTGTCCAAGTTAGCATGGACATTCACAGATATTGGAATAAATAGGGTACTTGGATTTGTATTTAGTTCTCTGCACTTAAGATAAGAATTATATTGGCTATGAAATTTCTTAATGAAATCTCTTTAAACTGTTTGTATGGTTATGGACTTCTTTTTTTATTTATAATTTGAGGGTATATTATGTTGGCTGATCATGATGGAACTCTTTCTTTCTCTTATACACCTGTTGGCACTGATAGTTCACCTCTTCGCTATCCTATCCTCTGCTTGTAGGATGTCACCTCTTTTATATCACAAATGTAGGGTTGACAGCAGTGGAAATGAAAGAAAAATTTGACTTCTGATCATACTTATAGGGTTGCATAGTTTGACTTCCAGATGTGGGAAGATCACGGTTCATTTCTTTCTTTTTCCAAAGAGCATTCCTTGATTTTGTTGCGTGGTAGCTTCAGAATTTAACATGTCACATTGTCTCTATTGTGTTGCATCTGTGTCCTGTGTCCGTGTTTGTGCAGTCTTAGGTGCCACTCTTATTGGTGTGTTTGTGTAGCTCCTTTCGTATACAGTTTCGTTTGTCATTCTTTCGTAGAAAATTTGTTTCCTATTCACAACAACAATAATATTAAAGCCTGTGGTGAGTTTACATAACCTTTTTACAGTACCTTTGACCTTTTGTGTTGATCTTCACGATACCAAGAAAGATATCAACTAGTTTTTTTGTTACCCAATCGTTGAACTTGATACATTAATCTCTATTATTTGGTGGCTCAAACGTGTGTTGGGTTTGTTGTATTTGCAGTGTCTCTCCATTGTCCCTCTGGAAATTTTCAGATGGGTTATTGCAGGCGTGGCAGGATTCATGTCTGCATCATTTGTGGCACTCAATCTCCGAGCTCACATAAAGTCAGCTGGTGAAAGTTGGATTTTGATTGTGGCCAGTATCTTCTTGCTGCAGTTAGCTCTTTCTGTCATTCTCAAACTGTATCTGTTTACTGTTACAGTATGAAACTAAACTGCCCCGCCCTCGATAAAACAGAATGTAGATTACAAAGATGAATTTCTTTTGGGGCCATTGGTTTCCAGTACTTACCAATGTTTAGCTAAACCATATCATTCATTGATTGGAGAACATCTATCTTATATATATGTTCCATAAGGTCAATAGATTCTTCTATCTTCATTACAAGAACATGTGGGATTTAATCATCTCTAAC

mRNA sequence

AATGAAAACTTAATTCAGTCTGGAACACGGAGATAGATCTCTGAGAAGACCCAGACGAAGAGGGAGAGGAAGAAAGAAGACGGAGAAGATGATGTCCGGTGGTAACTATACGACTATAGACAACCAAAATGTTTCAGGAGCTGTGCCTGCCGTTCCAGATCAGGGACAAATAACTGTGAAATTCAATGACTCAAGTCTTCAAACATTTCCTCCTTCTGGAACTCAAGGAAAGATCACTGGTGGTTCCCAGCCTCCTCGTGATGCTGATGATACATTTTCAAAACCAATCTCTGGCTCTGATGAAACCCCCCAACAAGGTGGCTGGCTTCGGACCTTTGCAATTTCTTCCTACAAACAATATTTTGATGTCGATACTTCAGATGTTCTAGAGAGGATCAAAGATTCACTTTTTCCATTCAGAGGAACTTTTAATGAGAGGACAGCTGACACTCCAGATCTATATGGTCCATTTTGGATATGTACTACGTTGATATTTGTGGCTGCTTCTATTGGAACTTTTGTAACATACGTGGCACACAAGATACATAAAAAAGAATGGAACTACGACATAAATTTGGTAACCTGGTCTGCTGGTTTGTTCTATGGCTATGTTACCATTGTTCCTCTTGGACTATATGTAATCCTCAAGTACTTCTCGGTGCCTTCTGGCCTTGTTCAGCTCTTATGTCTCTATGGCTACTCTTTATTTGTATTCATCCCGGCACTGTGTCTCTCCATTGTCCCTCTGGAAATTTTCAGATGGGTTATTGCAGGCGTGGCAGGATTCATGTCTGCATCATTTGTGGCACTCAATCTCCGAGCTCACATAAAGTCAGCTGGTGAAAGTTGGATTTTGATTGTGGCCAGTATCTTCTTGCTGCAGTTAGCTCTTTCTGTCATTCTCAAACTGTATCTGTTTACTGTTACAGTATGAAACTAAACTGCCCCGCCCTCGATAAAACAGAATGTAGATTACAAAGATGAATTTCTTTTGGGGCCATTGGTTTCCAGTACTTACCAATGTTTAGCTAAACCATATCATTCATTGATTGGAGAACATCTATCTTATATATATGTTCCATAAGGTCAATAGATTCTTCTATCTTCATTACAAGAACATGTGGGATTTAATCATCTCTAAC

Coding sequence (CDS)

ATGATGTCCGGTGGTAACTATACGACTATAGACAACCAAAATGTTTCAGGAGCTGTGCCTGCCGTTCCAGATCAGGGACAAATAACTGTGAAATTCAATGACTCAAGTCTTCAAACATTTCCTCCTTCTGGAACTCAAGGAAAGATCACTGGTGGTTCCCAGCCTCCTCGTGATGCTGATGATACATTTTCAAAACCAATCTCTGGCTCTGATGAAACCCCCCAACAAGGTGGCTGGCTTCGGACCTTTGCAATTTCTTCCTACAAACAATATTTTGATGTCGATACTTCAGATGTTCTAGAGAGGATCAAAGATTCACTTTTTCCATTCAGAGGAACTTTTAATGAGAGGACAGCTGACACTCCAGATCTATATGGTCCATTTTGGATATGTACTACGTTGATATTTGTGGCTGCTTCTATTGGAACTTTTGTAACATACGTGGCACACAAGATACATAAAAAAGAATGGAACTACGACATAAATTTGGTAACCTGGTCTGCTGGTTTGTTCTATGGCTATGTTACCATTGTTCCTCTTGGACTATATGTAATCCTCAAGTACTTCTCGGTGCCTTCTGGCCTTGTTCAGCTCTTATGTCTCTATGGCTACTCTTTATTTGTATTCATCCCGGCACTGTGTCTCTCCATTGTCCCTCTGGAAATTTTCAGATGGGTTATTGCAGGCGTGGCAGGATTCATGTCTGCATCATTTGTGGCACTCAATCTCCGAGCTCACATAAAGTCAGCTGGTGAAAGTTGGATTTTGATTGTGGCCAGTATCTTCTTGCTGCAGTTAGCTCTTTCTGTCATTCTCAAACTGTATCTGTTTACTGTTACAGTATGA

Protein sequence

MMSGGNYTTIDNQNVSGAVPAVPDQGQITVKFNDSSLQTFPPSGTQGKITGGSQPPRDADDTFSKPISGSDETPQQGGWLRTFAISSYKQYFDVDTSDVLERIKDSLFPFRGTFNERTADTPDLYGPFWICTTLIFVAASIGTFVTYVAHKIHKKEWNYDINLVTWSAGLFYGYVTIVPLGLYVILKYFSVPSGLVQLLCLYGYSLFVFIPALCLSIVPLEIFRWVIAGVAGFMSASFVALNLRAHIKSAGESWILIVASIFLLQLALSVILKLYLFTVTV

Homology

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BLAST of CmaCh11G011290 vs. ExPASy Swiss-Prot
Match: Q54TS4 (Protein YIPF1 homolog OS=Dictyostelium discoideum OX=44689 GN=yipf1 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.8e-28
Identity = 75/236 (31.78%), Postives = 132/236 (55.93%), Query Frame = 0


Query: 43  SGTQGKITGGSQPPRDADDTFSKPISGSDETPQQGGWLRTFAISSYKQYFDVDTSDVLER 102
           +    KI G S   + +D+    P++ +++  ++      + +  Y+  F+VDT +V  R
Sbjct: 91  NNNSNKIGGNSSNNKFSDNV---PLNTNEDGTEKK--YSFYEVPYYRFLFNVDTKEVGLR 150

Query: 103 IKDSLFPFRGTFNERTADTPDLYGPFWICTTLIFVAASIGTFVTYVAHKIHKKEWNYDIN 162
           +  S+ P + +F     + PDLYGPFW+ T+L+F+ A       Y  H    K W  DI 
Sbjct: 151 LIRSMLPIKFSFFNLIRENPDLYGPFWVLTSLVFIVAVTSNLNEYF-HSSDHKSWEVDIQ 210

Query: 163 LVTWSAGLFYGYVTIVPLGLYVILKYFSVPSGLVQLLCLYGYSLFVFIPALCLSIVPLEI 222
            + +SA   YGY  ++PL L+ I K+ ++   L+ +LC+YGY+LF+F+PA  L ++PL++
Sbjct: 211 KIVYSAITIYGYSFVIPLILWGIFKWMNLGLRLLDMLCIYGYTLFIFVPASILCVIPLQL 270

Query: 223 FRWVIAGVAGFMSASFVALNLRAHIK-SAGESWILIVASIFLLQLALSVILKLYLF 278
            +W+I  +A  +S  F+  N+   +K    +  ++I A I  L + L+++LKLY F
Sbjct: 271 VQWIIVAIASIVSGLFLVTNIFTPLKEDFTKRGLIICAVIGALHIGLALVLKLYFF 320

[Close]

BLAST of CmaCh11G011290 vs. ExPASy Swiss-Prot
Match: Q6P6G5 (Protein YIPF1 OS=Rattus norvegicus OX=10116 GN=Yipf1 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.6e-22
Identity = 76/222 (34.23%), Postives = 116/222 (52.25%), Query Frame = 0


Query: 70  SDETPQQGGWLRT---FAISSYKQYFDVDTSDVLERIKDSLFPFRGTFNER--TADTPDL 129
           SDET    G  ++   +    Y+ +FDVDT  V +RIK SL P  G    R      PDL
Sbjct: 61  SDETELLAGQKKSSPFWTFEYYQTFFDVDTYQVFDRIKGSLLPVPGKNFVRLYIRSNPDL 120

Query: 130 YGPFWICTTLIFVAASIGTFVTYVAHKIHKKEWNY--DINLVTWSAGLFYGYVTIVPLGL 189
           YGPFWIC TL+F  A  G    ++ H + +K ++Y  +   V+ +A + Y Y  +VPL L
Sbjct: 121 YGPFWICATLVFAIAISGNLSNFLIH-LGEKTYHYVPEFQKVSIAATVIYAYAWLVPLAL 180

Query: 190 YVILKYFS------VPSGLVQLLCLYGYSLFVFIPALCLSIVPLEIFRWVIAGVAGFMSA 249
           +  L + +      V    ++++C+YGYSLF++IP   L I+P  + RWV+  +A  +S 
Sbjct: 181 WGFLLWRNSKVMNIVSYSFLEIVCVYGYSLFIYIPTAVLWIIPQRVIRWVLVTIALGISG 240

Query: 250 SFVALNLRAHIKSAGESWIL-IVASIFLLQLALSVILKLYLF 278
           S +A+     ++       L  + +I LL + LSV    Y F
Sbjct: 241 SVLAMTFWPAVREDNRRVALATIVTIMLLHVLLSVGCLAYFF 281

[Close]

BLAST of CmaCh11G011290 vs. ExPASy Swiss-Prot
Match: Q91VU1 (Protein YIPF1 OS=Mus musculus OX=10090 GN=Yipf1 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.7e-22
Identity = 78/222 (35.14%), Postives = 116/222 (52.25%), Query Frame = 0


Query: 70  SDETPQQGGWLRT---FAISSYKQYFDVDTSDVLERIKDSLFPFRGTFNER--TADTPDL 129
           SDET    G  R+   +    Y+ +FDVDT  V +RIK SL P  G    R      PDL
Sbjct: 61  SDETELLAGQKRSSPFWTFEYYQTFFDVDTYQVFDRIKGSLLPVPGKNFVRLYIRSNPDL 120

Query: 130 YGPFWICTTLIFVAASIGTFVTYVAHKIHKKEWNY--DINLVTWSAGLFYGYVTIVPLGL 189
           YGPFWIC TL+F  A  G    ++ H + +K ++Y  +   V+ +A + Y Y  +VPL L
Sbjct: 121 YGPFWICATLVFAIAISGNLSNFLIH-LGEKTYHYVPEFQKVSIAATVIYAYAWLVPLAL 180

Query: 190 YVIL-----KYFSVPS-GLVQLLCLYGYSLFVFIPALCLSIVPLEIFRWVIAGVAGFMSA 249
           +  L     K  S+ S   ++++C+YGYSLF++IP   L I+P  + RWV+  +A  +S 
Sbjct: 181 WGFLLWRNSKVMSMVSYSFLEIVCVYGYSLFIYIPTAVLWIIPQRVVRWVLVMIALGVSG 240

Query: 250 SFVALNLRAHIKSAGESWIL-IVASIFLLQLALSVILKLYLF 278
           S + +     ++       L  + +I LL + LSV    Y F
Sbjct: 241 SVLVMTFWPAVREDNRRVALATIVTIVLLHVLLSVGCLAYFF 281

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BLAST of CmaCh11G011290 vs. ExPASy Swiss-Prot
Match: Q9Y548 (Protein YIPF1 OS=Homo sapiens OX=9606 GN=YIPF1 PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.3e-21
Identity = 74/222 (33.33%), Postives = 116/222 (52.25%), Query Frame = 0


Query: 70  SDETPQQGGWLRT---FAISSYKQYFDVDTSDVLERIKDSLFPFRGTFNER--TADTPDL 129
           SD+T    G  ++   +    Y+ +FDVDT  V +RIK SL P  G    R      PDL
Sbjct: 61  SDKTELLAGQKKSSPFWTFEYYQTFFDVDTYQVFDRIKGSLLPIPGKNFVRLYIRSNPDL 120

Query: 130 YGPFWICTTLIFVAASIGTFVTYVAHKIHKKEWNY--DINLVTWSAGLFYGYVTIVPLGL 189
           YGPFWIC TL+F  A  G    ++ H + +K ++Y  +   V+ +A + Y Y  +VPL L
Sbjct: 121 YGPFWICATLVFAIAISGNLSNFLIH-LGEKTYHYVPEFRKVSIAATIIYAYAWLVPLAL 180

Query: 190 YVILKYFS------VPSGLVQLLCLYGYSLFVFIPALCLSIVPLEIFRWVIAGVAGFMSA 249
           +  L + +      V    ++++C+YGYSLF++IP   L I+P +  RW++  +A  +S 
Sbjct: 181 WGFLMWRNSKVMNIVSYSFLEIVCVYGYSLFIYIPTAILWIIPQKAVRWILVMIALGISG 240

Query: 250 SFVALNLRAHIKSAGESWIL-IVASIFLLQLALSVILKLYLF 278
           S +A+     ++       L  + +I LL + LSV    Y F
Sbjct: 241 SLLAMTFWPAVREDNRRVALATIVTIVLLHMLLSVGCLAYFF 281

[Close]

BLAST of CmaCh11G011290 vs. ExPASy Swiss-Prot
Match: Q5RBL0 (Protein YIPF1 OS=Pongo abelii OX=9601 GN=YIPF1 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.9e-21
Identity = 74/222 (33.33%), Postives = 114/222 (51.35%), Query Frame = 0


Query: 70  SDETPQQGGWLRT---FAISSYKQYFDVDTSDVLERIKDSLFPFRGTFNER--TADTPDL 129
           SD+T    G  ++   +    Y+ +FDVDT  V +RIK SL P  G    R      PDL
Sbjct: 61  SDKTELLAGQKKSSPFWTFEYYQTFFDVDTYQVFDRIKGSLLPIPGKNFVRLYIRSNPDL 120

Query: 130 YGPFWICTTLIFVAASIGTFVTYVAHKIHKKEWNY--DINLVTWSAGLFYGYVTIVPLGL 189
           YGPFWIC TL+F  A  G    ++ H + +K + Y  +   V+ +A   Y Y  +VPL L
Sbjct: 121 YGPFWICATLVFAIAISGNLSNFLIH-LGEKTYRYVPEFRKVSIAATTIYAYAWLVPLAL 180

Query: 190 YVILKYFS------VPSGLVQLLCLYGYSLFVFIPALCLSIVPLEIFRWVIAGVAGFMSA 249
           +  L + +      V    ++++C+YGYSLF++IP   L I+P +  RW++  +A  +S 
Sbjct: 181 WGFLMWRNSKVMNIVSYSFLEIVCVYGYSLFIYIPTAILWIIPQKAVRWILVMIALGISG 240

Query: 250 SFVALNLRAHIKSAGESWIL-IVASIFLLQLALSVILKLYLF 278
           S +A+     ++       L  + +I LL + LSV    Y F
Sbjct: 241 SVLAMTFWPAVREDNRRVALATIVTIVLLHMLLSVGCLAYFF 281

[Close]

BLAST of CmaCh11G011290 vs. TAIR 10
Match: AT5G27490.1 (Integral membrane Yip1 family protein )

HSP 1 Score: 465.7 bits (1197), Expect = 2.6e-131
Identity = 226/281 (80.43%), Postives = 255/281 (90.75%), Query Frame = 0


Query: 1   MMSGGNYTTIDNQNVSGAVPAVPDQGQITVKFNDSSLQTFPPSGTQGKITGGSQPPRDAD 60
           MMSGG+YT ID+Q VSG+VPAVPD G +TVKF DS+LQTFPPS TQGKI+GG+ PPRDAD
Sbjct: 2   MMSGGSYTNIDHQKVSGSVPAVPDPGHVTVKFADSNLQTFPPSATQGKISGGTNPPRDAD 61

Query: 61  DTFSKPISGSDETPQQGGWLRTFAISSYKQYFDVDTSDVLERIKDSLFPFRGTFNERTAD 120
           DTFS+P++G+ + PQ  GWL  F + +YK YFDVDTSDV+ER+K+SLFPFRGTF E+TA+
Sbjct: 62  DTFSRPVNGTTDEPQSSGWLHRFTVGAYKPYFDVDTSDVVERLKESLFPFRGTFTEKTAN 121

Query: 121 TPDLYGPFWICTTLIFVAASIGTFVTYVAHKIHKKEWNYDINLVTWSAGLFYGYVTIVPL 180
            PDLYGPFWICTTLIFVAASIGTFVTY+AHK+ K+EWNYDINLVTWSAG+FYGYVTIVPL
Sbjct: 122 NPDLYGPFWICTTLIFVAASIGTFVTYIAHKLKKQEWNYDINLVTWSAGVFYGYVTIVPL 181

Query: 181 GLYVILKYFSVPSGLVQLLCLYGYSLFVFIPALCLSIVPLEIFRWVIAGVAGFMSASFVA 240
            LYV+LKYFS PSGLVQL CLYGYSLFVFIPALCLS+VPLEIFRWVIAG+AGFMSA+FVA
Sbjct: 182 ALYVVLKYFSAPSGLVQLFCLYGYSLFVFIPALCLSVVPLEIFRWVIAGLAGFMSATFVA 241

Query: 241 LNLRAHIKSAGESWILIVASIFLLQLALSVILKLYLFTVTV 282
           LNL+AHI SAGE W LIV SIFLLQLALSV+LKLYLFTVTV
Sbjct: 242 LNLKAHINSAGERWFLIVVSIFLLQLALSVVLKLYLFTVTV 282

[Close]

BLAST of CmaCh11G011290 vs. TAIR 10
Match: AT3G05280.1 (Integral membrane Yip1 family protein )

HSP 1 Score: 449.9 bits (1156), Expect = 1.5e-126
Identity = 223/281 (79.36%), Postives = 251/281 (89.32%), Query Frame = 0


Query: 1   MMSGGNYTTIDNQNVSGAVPAVPDQGQITVKFNDSSLQTFPPSGTQGKITGGSQPPRDAD 60
           MMSGGNYTTID+Q VSG+VP+VPD G  TVKF +S+LQTFPPS TQGKI+GGS PPRDAD
Sbjct: 1   MMSGGNYTTIDSQKVSGSVPSVPDPGHTTVKFAESNLQTFPPSATQGKISGGSNPPRDAD 60

Query: 61  DTFSKPISGSDETPQQGGWLRTFAISSYKQYFDVDTSDVLERIKDSLFPFRGTFNERTAD 120
           D+FS   +GS + PQ GGWL  F + +YK +FDVDTSDV+ER+K+SLFPFRGTF E+TAD
Sbjct: 61  DSFSGHGNGSTDEPQSGGWLHKFTVGAYKPFFDVDTSDVVERLKESLFPFRGTFTEKTAD 120

Query: 121 TPDLYGPFWICTTLIFVAASIGTFVTYVAHKIHKKEWNYDINLVTWSAGLFYGYVTIVPL 180
            PDLYGPFWICTTLIFVAASIGTFVTY+AHK  K+EWNYDINLVTWSAG+FYGYVTIVPL
Sbjct: 121 KPDLYGPFWICTTLIFVAASIGTFVTYIAHKWKKQEWNYDINLVTWSAGVFYGYVTIVPL 180

Query: 181 GLYVILKYFSVPSGLVQLLCLYGYSLFVFIPALCLSIVPLEIFRWVIAGVAGFMSASFVA 240
            LYV+LKYFS PSGLVQL CLYGYSLFVFIPALCLS+VP+EIFRWVIAGVAGFMSA+FVA
Sbjct: 181 ALYVVLKYFSAPSGLVQLFCLYGYSLFVFIPALCLSVVPVEIFRWVIAGVAGFMSATFVA 240

Query: 241 LNLRAHIKSAGESWILIVASIFLLQLALSVILKLYLFTVTV 282
           LNL+AHI SAGE  ILI+ASIFLLQLAL+V+LKLY+F V V
Sbjct: 241 LNLKAHINSAGERSILIIASIFLLQLALAVVLKLYIFNVKV 281

[Close]

BLAST of CmaCh11G011290 vs. TAIR 10
Match: AT2G39805.1 (Integral membrane Yip1 family protein )

HSP 1 Score: 175.6 bits (444), Expect = 5.5e-44
Identity = 107/282 (37.94%), Postives = 158/282 (56.03%), Query Frame = 0


Query: 6   NYTTIDNQNVSGAVPAV--PDQGQITVKF------NDSSLQTFPPSGTQGKITGGSQPPR 65
           ++  + + ++ G+VPAV   D+    V          +S+Q FPP+   G  T G Q   
Sbjct: 4   SFANLQSSHLLGSVPAVISDDKRSTNVPIASVNEGPSASMQIFPPN--LGNNTKGYQ--- 63

Query: 66  DADDTFSKPISGSDETPQQGGWLRTFAISSYKQYFDVDTSDVLERIKDSLFPFRGTFNER 125
               T   P  G  + P    W   F + SY QYFDVDT  VL R+  SL+P  G F  +
Sbjct: 64  ----TLESPTEGPAQQP-SNNWKGFFNVYSYTQYFDVDTDVVLNRLMSSLYPTSGDFFNK 123

Query: 126 TADTPDLYGPFWICTTLIFVAASIGTFVTYVAHK--IHKKEWNYDINLVTWSAGLFYGYV 185
               PDLYG  WICTTL+FV AS+G   TY+  K       W +D+N +  +A + YGY 
Sbjct: 124 IDANPDLYGLVWICTTLVFVLASLGNCATYLVKKRTDSNAPWIFDVNYMNLAASIIYGYA 183

Query: 186 TIVPLGLYVILKYFSVPSGLVQLLCLYGYSLFVFIPALCLSIVPLEIFRWVIAGVAGFMS 245
            IVPLG Y  L+Y    + L++  CL+GYSLF+F+P     ++P+E  RWVI  +AG  S
Sbjct: 184 IIVPLGFYFALRYMGSKADLLRFWCLWGYSLFIFVPTSLPLLIPVEFLRWVIILLAGSAS 243

Query: 246 ASFVALNLRAHIKSAGESWILIVASIFLLQLALSVILKLYLF 278
           + FVALNLR+++++  +  + ++A+ F LQ+ LS+ +K++ F
Sbjct: 244 SCFVALNLRSYLETNNDITV-VMAAAFGLQMVLSIFIKVWFF 274

[Close]

BLAST of CmaCh11G011290 vs. TAIR 10
Match: AT2G39805.2 (Integral membrane Yip1 family protein )

HSP 1 Score: 172.6 bits (436), Expect = 4.6e-43
Identity = 105/282 (37.23%), Postives = 155/282 (54.96%), Query Frame = 0


Query: 6   NYTTIDNQNVSGAVPAV--PDQGQITVKF------NDSSLQTFPPSGTQGKITGGSQPPR 65
           ++  + + ++ G+VPAV   D+    V          +S+Q FPP+   G  T G Q   
Sbjct: 4   SFANLQSSHLLGSVPAVISDDKRSTNVPIASVNEGPSASMQIFPPN--LGNNTKGYQ--- 63

Query: 66  DADDTFSKPISGSDETPQQGGWLRTFAISSYKQYFDVDTSDVLERIKDSLFPFRGTFNER 125
               T   P            W   F + SY QYFDVDT  VL R+  SL+P  G F  +
Sbjct: 64  ----TLESPTVEGPAQQPSNNWKGFFNVYSYTQYFDVDTDVVLNRLMSSLYPTSGDFFNK 123

Query: 126 TADTPDLYGPFWICTTLIFVAASIGTFVTYVAHK--IHKKEWNYDINLVTWSAGLFYGYV 185
               PDLYG  WICTTL+FV AS+G   TY+  K       W +D+N +  +A + YGY 
Sbjct: 124 IDANPDLYGLVWICTTLVFVLASLGNCATYLVKKRTDSNAPWIFDVNYMNLAASIIYGYA 183

Query: 186 TIVPLGLYVILKYFSVPSGLVQLLCLYGYSLFVFIPALCLSIVPLEIFRWVIAGVAGFMS 245
            IVPLG Y  L+Y    + L++  CL+GYSLF+F+P     ++P+E  RWVI  +AG  S
Sbjct: 184 IIVPLGFYFALRYMGSKADLLRFWCLWGYSLFIFVPTSLPLLIPVEFLRWVIILLAGSAS 243

Query: 246 ASFVALNLRAHIKSAGESWILIVASIFLLQLALSVILKLYLF 278
           + FVALNLR+++++  +  + ++A+ F LQ+ LS+ +K++ F
Sbjct: 244 SCFVALNLRSYLETNNDITV-VMAAAFGLQMVLSIFIKVWFF 275

The following BLAST results are available for this feature:

BLAST of CmaCh11G011290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54TS4	1.8e-28	31.78	Protein YIPF1 homolog OS=Dictyostelium discoideum OX=44689 GN=yipf1 PE=3 SV=1	[more]
Q6P6G5	2.6e-22	34.23	Protein YIPF1 OS=Rattus norvegicus OX=10116 GN=Yipf1 PE=2 SV=1	[more]
Q91VU1	5.7e-22	35.14	Protein YIPF1 OS=Mus musculus OX=10090 GN=Yipf1 PE=2 SV=1	[more]
Q9Y548	1.3e-21	33.33	Protein YIPF1 OS=Homo sapiens OX=9606 GN=YIPF1 PE=1 SV=1	[more]
Q5RBL0	4.9e-21	33.33	Protein YIPF1 OS=Pongo abelii OX=9601 GN=YIPF1 PE=2 SV=1	[more]

BLAST of CmaCh11G011290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27490.1	2.6e-131	80.43	Integral membrane Yip1 family protein	[more]
AT3G05280.1	1.5e-126	79.36	Integral membrane Yip1 family protein	[more]
AT2G39805.1	5.5e-44	37.94	Integral membrane Yip1 family protein	[more]
AT2G39805.2	4.6e-43	37.23	Integral membrane Yip1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006977	Yip1 domain	PFAM	PF04893	Yip1	coord: 113..268 e-value: 3.9E-13 score: 49.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..52
None	No IPR available	PANTHER	PTHR12822:SF9	PROTEIN YIPF	coord: 1..279
IPR039765	Protein Yip5/YIPF1/YIPF2	PANTHER	PTHR12822	UNCHARACTERIZED	coord: 1..279

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G011290.1	CmaCh11G011290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0031267	small GTPase binding