CmaCh11G010720 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G010720
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description30S ribosomal protein S31, mitochondrial
LocationCma_Chr11: 5879542 .. 5879802 (+)
RNA-Seq ExpressionCmaCh11G010720
SyntenyCmaCh11G010720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCAGTGGTGTGGCGCAGTAGCTAGGGGAGTGATGGCGGCGGAGCGCCGGTCGCCTTCACTAACGTCGTCAATGGCGGTGGAAGGACTGGTTCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGCTCGTACGGCAACTCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGGATCAAGGACAAAAACGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

mRNA sequence

ATGATGCAGTGGTGTGGCGCAGTAGCTAGGGGAGTGATGGCGGCGGAGCGCCGGTCGCCTTCACTAACGTCGTCAATGGCGGTGGAAGGACTGGTTCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGCTCGTACGGCAACTCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGGATCAAGGACAAAAACGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

Coding sequence (CDS)

ATGATGCAGTGGTGTGGCGCAGTAGCTAGGGGAGTGATGGCGGCGGAGCGCCGGTCGCCTTCACTAACGTCGTCAATGGCGGTGGAAGGACTGGTTCCGATCCTTTGTGGACGAGGTGACAAGAAGACGAAGAAGGGGAAAATATTCAAAGGCTCGTACGGCAACTCCAGGCCGAAGAAGGAGAAGAAGATTCAGCGGATCAAGGACAAAAACGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

Protein sequence

MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNSRPKKEKKIQRIKDKNEVPSSTPWPLPFKLI
Homology
BLAST of CmaCh11G010720 vs. ExPASy Swiss-Prot
Match: Q9SJU8 (30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g21290 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.1e-24
Identity = 58/95 (61.05%), Postives = 65/95 (68.42%), Query Frame = 0

Query: 2  MQWCGAVARGVMAAERRSPSLTSSMAVEGLVPI----------LCGRGDKKTKKGKIFKG 61
          MQWCGA+ R +M  +R S +L  S     L P           LCGRGDKKTKKGK FKG
Sbjct: 4  MQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKRFKG 63

Query: 62 SYGNSRPKKEKKIQRIKDKNEVPSSTPWPLPFKLI 87
          SYGNSR KK+K I+RIKDK E+P STPWPLPFKLI
Sbjct: 64 SYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

BLAST of CmaCh11G010720 vs. ExPASy Swiss-Prot
Match: P47909 (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 6.9e-19
Identity = 43/53 (81.13%), Postives = 49/53 (92.45%), Query Frame = 0

Query: 34 ILCGRGDKKTKKGKIFKGSYGNSRPKKEKKIQRIKDKNEVPSSTPWPLPFKLI 87
          + CGRGDKKTK+GK FKGSYGN+RPK+EKKI+RIKD+ EVP STPWPLPFKLI
Sbjct: 30 VTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVEVPRSTPWPLPFKLI 82

BLAST of CmaCh11G010720 vs. ExPASy Swiss-Prot
Match: P47910 (30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 PE=1 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 7.4e-05
Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 0

Query: 11 GVMAAERRSPSLTSSMAVEGLVPIL-CGRGDKKTKKGKIFKGSYGNSRPKKEKK 64
          GV  +   + SL+SS++    +P++ CGRGD+KT KGK F  S+GN+RPK + K
Sbjct: 28 GVSLSSPPTLSLSSSVSTSPALPLIYCGRGDRKTAKGKRFNHSFGNARPKNKNK 81

BLAST of CmaCh11G010720 vs. TAIR 10
Match: AT2G21290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 110.9 bits (276), Expect = 5.1e-25
Identity = 58/95 (61.05%), Postives = 65/95 (68.42%), Query Frame = 0

Query: 2  MQWCGAVARGVMAAERRSPSLTSSMAVEGLVPI----------LCGRGDKKTKKGKIFKG 61
          MQWCGA+ R +M  +R S +L  S     L P           LCGRGDKKTKKGK FKG
Sbjct: 4  MQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKRFKG 63

Query: 62 SYGNSRPKKEKKIQRIKDKNEVPSSTPWPLPFKLI 87
          SYGNSR KK+K I+RIKDK E+P STPWPLPFKLI
Sbjct: 64 SYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

BLAST of CmaCh11G010720 vs. TAIR 10
Match: AT2G38140.1 (plastid-specific ribosomal protein 4 )

HSP 1 Score: 40.4 bits (93), Expect = 8.4e-04
Identity = 21/45 (46.67%), Postives = 30/45 (66.67%), Query Frame = 0

Query: 34 ILCGRGDKKTKKGKIFKGSYGNSRPKKEKKIQRIKDKNEVPSSTP 79
          + CGRGD+KT KGK F  S+GN+RP+ + K  R  ++  VP + P
Sbjct: 53 VYCGRGDRKTAKGKRFNHSFGNARPRNKSK-GRGPERVPVPPAPP 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SJU87.1e-2461.0530S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g... [more]
P479096.9e-1981.1330S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=3994... [more]
P479107.4e-0546.3030S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 P... [more]
Match NameE-valueIdentityDescription
AT2G21290.15.1e-2561.05unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G38140.18.4e-0446.67plastid-specific ribosomal protein 4 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR03082630S ribosomal proteinPFAMPF17067RPS31coord: 30..78
e-value: 2.1E-9
score: 37.5
IPR03082630S ribosomal proteinTIGRFAMTIGR04560TIGR04560coord: 37..60
e-value: 1.7E-12
score: 45.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..86
NoneNo IPR availablePANTHERPTHR34550:SF330S RIBOSOMAL PROTEIN S31, MITOCHONDRIALcoord: 1..86
IPR04469530S ribosomal protein S31, plantPANTHERPTHR3455030S RIBOSOMAL PROTEIN S31, CHLOROPLASTICcoord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G010720.1CmaCh11G010720.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032544 plastid translation
cellular_component GO:0009536 plastid
cellular_component GO:0005840 ribosome