CmaCh11G010710 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G010710
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	epimerase family protein SDR39U1 homolog, chloroplastic-like
Location	Cma_Chr11: 5872038 .. 5877660 (-)
RNA-Seq Expression	CmaCh11G010710
Synteny	CmaCh11G010710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAGCTTCACCCGAGAACCATTTGTTTCAGTCTCACAGAGCTTAATTTTGTGATGGAGATGGCTCTCTCCCGCCTCCTGATCTCAAGAAGATCAACCTGGTCCATCAAATCCATCCCAACCTAATCTTCACCTTTCATTCTTCCTTTCTTCCTTCTCCCTCTCGCCGCCGATAGAGCTTTCCGATCCCACCCGCCGTTATTCCCTTCAATGAAGCTCTCTGGCGCCACTTCTCTCTCATGGAGCCGTACTGTCTCCCATTCTATTCGTATCCCTCAACACCTTGCGGTAAGTGTTCGATTCTCGTGATCTCATTTATTAGCTTTGCTTCGGCGTTGAGGAGTTTGTGGTTTCTCTGTTCTTCTTACTTTAAATTCTCCTTTTGCTTGAAGATATGTGGCAAGAGACTTCAGGTTTTCTGCGCCATTGATGAAACAGAGATGGTATGTTCTTGAATTTCTGTGTTTATGTTTTATTGTAATTGAGAATTGTAATGTGTGTTAATTTGAAGTCAGTTTGTTGATCGTATTTCCTGTGTTTGATTATTGTTTTCCTATATTTTTTTAGCTATTGTTGTTATTGATCGTATGGGGCTAGGTAATTTGAGATTTCGTAATGAAGCTCTATTGACTAAATGGTTGTGGCGTTTTCCATTGAAGTAGAAGTATGGTCCTCACTCTCTCTAGTGAGCCTTGGTTTGTGGGTTTATAGGCACTTTCTAGAGTTCTTCGAAGGCCATCTCTTGGGACTTTCCCATCTTTTCTAATTCTGTGAAGTGCTCAGTTGGAGATGGTTCAAACACTCTAGTTTTTGGAGGACTATGGGTTGGGTGATTGTGAGATACTACATCGGATGGAGAGGAGAACGAAACATTACCTTATAAGGGTGTGTGAACCTCTCCCTAATAGATGCGTTTTAAAATCGTGAGGCTGCGAGCGATATGTAACAGGCCAAAGTGGACAATACCTGCTAGCGGTGGGTTTGAGTTGTTAAAAATGTATAAAAGTCGATCACCGGACGGACGGTGCGAGGCATTGGTCGGAGTAGGGCTAGACTTTCTCCATAGTAGATGCATTTTAAAACTATGAGACTGACGACGATATGTAACAAGCCAAAGCAGACAATATCTGCTAGCGGTGAGTTTGTAACAGCGCTGTTACAGTGATAGTTCTTTTTGTACTTTGTTCCCTTGCTTGTACCCCCTTTCCTCCTTGAGGTTGTGTCCCATAGCTTGGTCTTTTAATTTTGGTTTTCATCCTCTTTCGAACAGGGAATCATGTGAGTATCTGCTCTTTTTTCTTTATTGGGAAACTTCCATATTCATCTGACTAGATGGCATATTCGTTTTTGGTTCCTTAATGCCTCATACGTGTTCCCTTGTTCATTTTTGGTTATTTCGGGTAGCCATTATGCTTCTAGAAATTCAAGGTTGAAATTTTGAAGGTCATTTTCTTAGTTAGGTCTGTGGTTTTGGTTAGGTCCTATTTTTTTAGTTGTTTTTCAAGCCCTTTTGTGTTCTTTCATTTTTCTCTGCTCAATTTCTTGTTTTAAAAAATTGTTACAGAAAAATCAGCTCACTGTATCAATAACTGGAGCTACAGGCTTCATCGGTAGAAGACTTGTGCGACGGCTAAATGCAGGTTATATTCTATACATCAAGCTAGACATCTCGAAAAACCAAAGACATCAAATCTTGCTCTTTTTTTTTTACCCCATAGTTTGTATCTTTAAGCTTCCCGCTCCAATCTGCTTCTCACAATGTAGTAGATAAACGACTGATTAAGAATTCTTTGATGTGTTTCTGGTCATAGATAACCATAATATTCGAGTTCTGACACGTTCTAAATCTAAAGCTGAGTTGATTTTTCCGGGTAAGAAGGTAATACATGTCAATCGTCTTTTTTTGTTTTACTGTATCATCTGAATCTTCTTCTGCTTAATTATTGAACTACATCCCACACTTTGTAGCTAGGGAATTTCCAGGAATCGTGATCGCAGAGGAGCCAGGGTGGAAAGACTGCATCCAAGGTTCAGATGGTGTTGTTAACTTGGCTGGGATGCCCATAAGTACCAGGTGGTCTTCTGAGGTTAGTACATATTTCCTATGGATTTTGACCCTTTCTAGCATGATTTATGGTCCCATATACTACACAAGCAAGTAATAAACTGTTCAGTTAAATACTATTTACATGTACGGTAATTAAAAACTAATCTTGGGATAGAGCTTAGTGTCACGGTCATGCTCGTTTAGGGCGTGTTGCTGATGCCGAACCCTTTATTTAATTTTGTATTGTATTTCCTTACTATTGTATTTCTATTTGTACGACTACTCGGCGAAATCATGTCTAGGCATGCCAGACCTGATTTGCCTCAAAACATACTATAGGGAGGTATGACTAGTTGTCAACTCCTCTCCCTGATTTTGTATGAACGTTCGACGAAATCACGTCTAGGTTTGCCATACTTGAATCGCCTCAAAATGTACTATAGGGAGATGTTGTGTTTCCTTTTGCTTATAGTTATATAATGTTGCTTTCAAATCTTCCCTCATTCTTACTTTCAAACTCGCTTTCGAAAATCTCTCTACCCCTGCTTTTTAAAACCTTCTTCTCAAAACAGAGCCAGAGGCTTGAGCATACGTTGTCCGGCCCTAGGTGACGCGAATCCCAGTTGGCTTGACTCACTCGGTGTTGGGAGTGAGTGCCGCATAATCGCAAAGTCCGTTGCCAAGAAAAGTGCGATTATGACAATTAGCATATTCACTAACTGAAAACCAGATCCTTTTTAGATGAACCGTCTTTGTAGAATTAGATTCAGGACGTGCTTTTGATCGGTCGATCTGACAGTTTGTAGTTGTATGTGAAACAACTAACATTATCTCTTACCCTACTGGTTTGACAATCTGAGAACTGTTTATATAATCTATAATATATAATTTGTGCCCATTGTAATACAGATCAAGAAAGAGATCAAGCAAAGCAGGATCAGAGTCACCTCAAAGGTAAGAAGTTATCGAACATAACTATAGAGTACTGCAAACAGTTTAAGGGACTTCTTTCCATTTCTAGCTTACAAATGCAAAATCTGATACATAGCAATATTTAATGCCTCGTTTACATGGTTACTTAACTGATGTGAAGGTTGTAAGGTTAATTAACAATGCGCCAGATGCTGCTCGCCCTACTGTTCTTGTTAGCTCAACTGCTGTTGGTTACTACGGTACGTGTTTCTATCTGATTTACTCGACTCCATCTCGAAAAACTATCTGAAAGAACAGATCACACTATTTTATTTCGTTTTTTTTTTCATCCTTTTCGTATTGGGACTGCCCAGTTTCTCAGTTTTGATGTGAGAATCATATAATCTTCTATTGGATCACATACATAATCTAAACTTTACTCCTTTTGCTCTCTCTCTCAGGCACAAGTGAAACAGCAATATTTGACGAACGAAGCCCATCCGGAAACGATTACTTGGCCGAGGTGAGGAGAGTAGTTAGATAGAGCTAATTAACGAGCGATTTTATTTGTTTTTCTTCGTAAACGAAGATGAAAAGAGTTAAAGCACAATCTTTCGCTCGTGTTTCAACCAAATTTCCATCAATAATAGAGCATAGTGACAATTCTGGGTCCTTTTTTTAATCTTTTGTAGTTCAAGCTTGTGATGGGAACTGTTTTGCCACAAGTATCTTAAGATAGAGCTAGTAAAACTTTGTATCATCAAAATGGAGTCATGAAATTATACATCATCCTGTAATTCACTCGACCGTTCTCTAGTGTGAGCGGTTTATCGACGAGTATTAAGATTTCCTTCTTTTTGTTATTGAAATTCTTCACCATCTTGTCTACCTTCATTCGGGTGTTTGCTTAAGACAGTGATTTTCCAGGTTTGTAGGGAATGGGAAGCAACAGCCCTGGGAGTAAACAAGAATGTCAGAGTGGCTCTTATTCGTATAGGCGTTGTTCTTGGTAAAGGTGGTGCTTTAGGTATGGAAAAATTCTTAATTATTAGGTTTAATTTGTTAGCTTTTTTCCACTTTGTTCGAAAACACGTTTATTTTGGTCGTCGTACTTTTTAAACGTTATCATTCTCGTCCTTTTGTTTTACTTTTTATTTTTTCTTTTTTAAATCACAGTTTCGACCTAATTTTCCACTCTGACTAATTTTTCTAAAAATTATCGTACTTTTGTGTTATAAGGATTACTTTTTCTAAAGATTCTCGTCTTTTATAGGGACTAAAATAGAATAAACTTTAGACCAAATAGACCATTATAAACAAAACAAAATATTAAATTTAATTATTATATAGTTTGTTAAATCAGCTTTCCACATTAAATTACTTGAAGTTGAAAAGGTCTATGTTAATTTCTAAATCTTTTTTATTTTTAATTTTTTGAATCCATATTTATCTGTGTGCATTTGCAGCCAAAATGATCCCCCTCTTCATGATGTATGCTGGAGGTCCATTGGGATCTGGAAAACAATGGTAATACTCTCCCCCAAGACTCCATTATACATTTTTTTTTTATTAAAATTACAAGTTTGATCCCTATAGTCAGGGGATAATTTTAATCCCTATGATTTGAAAAGTTCATTTCTAATTTTTGTTTTAACAAAATATATTTCTTTTTTTGACTTAATATTGAATTTTATAGTAAAATGAGTTTGCAGGTTTTCCTGGATCCATTTGGATGACATTGTGGACCTAATATATGAAGCACTGATGAATCCATCTTATAAGGGTAATAAAATTTTAATTATAAAAATTAAAATAAAAAAAAAACGCAGAATTAGCCTTATTTAAAGCTAATCATGTATTATTTATGGACAAAAACAGGTGTAATAAATGGAACGGCACCTAACCCGGTTAAATTGTCTGAATTATGTGAGCGGTTGGGAGCCGCCATGGGCAGACCTTCATGGCTTCCCGTACCTGACTTCGCCCTCAAAGCCGTCCTTGGAGATGGAGCTTCTGTGGTCACTCTCTCTCTCTCTCTTTTATCCCTTCCTTTTCACTCTTTAAATTAATCCTATAAACCATAGGCCTCTATTAGAACCCTACAACTTCTTAGACAAGAAGTTCTAAGCTCAAAGACGTAATGAACAATTTCTAAGGAGTTTCATAAAGTTCTTAGTAAATAGGCTGATTAATTCAGGCCAATTTGTTAGCCTCAGATCAATAAGAACACCTGAATTTCTTGCAGGTTTTGGAAGGGCAAAGGGTAGTGCCTGCGAGAGCCAAGGAATTGGGGTTTTCATTCAAGTACCCGTCTGTGAAAGACGCACTCAAGGCCATTCTTTCCCAAGGGAATCAAATATAAAATCTGAAGAATAGTAGCATCATCTTCCATTTATATATATATATATATATATATCATAACACACTATTGAGGAGGTCGATTTTTTGTTCAGTAATTTGATTTTTGGTTTTGGTTTCGGTTTCCCGCTCAAATGAAACGGAATGGGAAGGTCATAAATATATGATTGGGAGGTTTAAGGTATGTAGTAATTTTTATGCTATAAAGTCTCGTAATTAATTATTTAAGTTTTAATAGTAATTTTTATTATTTTATTTGTAATTTAATTGTTATTGATGGTATGAAAATTCAAATTCAAAGTTTTTAA

mRNA sequence

CCAGCTTCACCCGAGAACCATTTGTTTCAGTCTCACAGAGCTTAATTTTGTGATGGAGATGGCTCTCTCCCGCCTCCTGATCTCAAGAAGATCAACCTGGTCCATCAAATCCATCCCAACCTAATCTTCACCTTTCATTCTTCCTTTCTTCCTTCTCCCTCTCGCCGCCGATAGAGCTTTCCGATCCCACCCGCCGTTATTCCCTTCAATGAAGCTCTCTGGCGCCACTTCTCTCTCATGGAGCCGTACTGTCTCCCATTCTATTCGTATCCCTCAACACCTTGCGATATGTGGCAAGAGACTTCAGGTTTTCTGCGCCATTGATGAAACAGAGATGAAAAATCAGCTCACTGTATCAATAACTGGAGCTACAGGCTTCATCGGTAGAAGACTTGTGCGACGGCTAAATGCAGATAACCATAATATTCGAGTTCTGACACGTTCTAAATCTAAAGCTGAGTTGATTTTTCCGGCTAGGGAATTTCCAGGAATCGTGATCGCAGAGGAGCCAGGGTGGAAAGACTGCATCCAAGGTTCAGATGGTGTTGTTAACTTGGCTGGGATGCCCATAAGTACCAGGTGGTCTTCTGAGATCAAGAAAGAGATCAAGCAAAGCAGGATCAGAGTCACCTCAAAGGTTGTAAGGTTAATTAACAATGCGCCAGATGCTGCTCGCCCTACTGTTCTTGTTAGCTCAACTGCTGTTGGTTACTACGGCACAAGTGAAACAGCAATATTTGACGAACGAAGCCCATCCGGAAACGATTACTTGGCCGAGGTTTGTAGGGAATGGGAAGCAACAGCCCTGGGAGTAAACAAGAATGTCAGAGTGGCTCTTATTCGTATAGGCGTTGTTCTTGGTAAAGGTGGTGCTTTAGCCAAAATGATCCCCCTCTTCATGATGTATGCTGGAGGTCCATTGGGATCTGGAAAACAATGGTTTTCCTGGATCCATTTGGATGACATTGTGGACCTAATATATGAAGCACTGATGAATCCATCTTATAAGGGTGTAATAAATGGAACGGCACCTAACCCGGTTAAATTGTCTGAATTATGTGAGCGGTTGGGAGCCGCCATGGGCAGACCTTCATGGCTTCCCGTACCTGACTTCGCCCTCAAAGCCGTCCTTGGAGATGGAGCTTCTGTGGTTTTGGAAGGGCAAAGGGTAGTGCCTGCGAGAGCCAAGGAATTGGGGTTTTCATTCAAGTACCCGTCTGTGAAAGACGCACTCAAGGCCATTCTTTCCCAAGGGAATCAAATATAAAATCTGAAGAATAGTAGCATCATCTTCCATTTATATATATATATATATATATATCATAACACACTATTGAGGAGGTCGATTTTTTGTTCAGTAATTTGATTTTTGGTTTTGGTTTCGGTTTCCCGCTCAAATGAAACGGAATGGGAAGGTCATAAATATATGATTGGGAGGTTTAAGGTATGTAGTAATTTTTATGCTATAAAGTCTCGTAATTAATTATTTAAGTTTTAATAGTAATTTTTATTATTTTATTTGTAATTTAATTGTTATTGATGGTATGAAAATTCAAATTCAAAGTTTTTAA

Coding sequence (CDS)

ATGAAGCTCTCTGGCGCCACTTCTCTCTCATGGAGCCGTACTGTCTCCCATTCTATTCGTATCCCTCAACACCTTGCGATATGTGGCAAGAGACTTCAGGTTTTCTGCGCCATTGATGAAACAGAGATGAAAAATCAGCTCACTGTATCAATAACTGGAGCTACAGGCTTCATCGGTAGAAGACTTGTGCGACGGCTAAATGCAGATAACCATAATATTCGAGTTCTGACACGTTCTAAATCTAAAGCTGAGTTGATTTTTCCGGCTAGGGAATTTCCAGGAATCGTGATCGCAGAGGAGCCAGGGTGGAAAGACTGCATCCAAGGTTCAGATGGTGTTGTTAACTTGGCTGGGATGCCCATAAGTACCAGGTGGTCTTCTGAGATCAAGAAAGAGATCAAGCAAAGCAGGATCAGAGTCACCTCAAAGGTTGTAAGGTTAATTAACAATGCGCCAGATGCTGCTCGCCCTACTGTTCTTGTTAGCTCAACTGCTGTTGGTTACTACGGCACAAGTGAAACAGCAATATTTGACGAACGAAGCCCATCCGGAAACGATTACTTGGCCGAGGTTTGTAGGGAATGGGAAGCAACAGCCCTGGGAGTAAACAAGAATGTCAGAGTGGCTCTTATTCGTATAGGCGTTGTTCTTGGTAAAGGTGGTGCTTTAGCCAAAATGATCCCCCTCTTCATGATGTATGCTGGAGGTCCATTGGGATCTGGAAAACAATGGTTTTCCTGGATCCATTTGGATGACATTGTGGACCTAATATATGAAGCACTGATGAATCCATCTTATAAGGGTGTAATAAATGGAACGGCACCTAACCCGGTTAAATTGTCTGAATTATGTGAGCGGTTGGGAGCCGCCATGGGCAGACCTTCATGGCTTCCCGTACCTGACTTCGCCCTCAAAGCCGTCCTTGGAGATGGAGCTTCTGTGGTTTTGGAAGGGCAAAGGGTAGTGCCTGCGAGAGCCAAGGAATTGGGGTTTTCATTCAAGTACCCGTCTGTGAAAGACGCACTCAAGGCCATTCTTTCCCAAGGGAATCAAATATAA

Protein sequence

MKLSGATSLSWSRTVSHSIRIPQHLAICGKRLQVFCAIDETEMKNQLTVSITGATGFIGRRLVRRLNADNHNIRVLTRSKSKAELIFPAREFPGIVIAEEPGWKDCIQGSDGVVNLAGMPISTRWSSEIKKEIKQSRIRVTSKVVRLINNAPDAARPTVLVSSTAVGYYGTSETAIFDERSPSGNDYLAEVCREWEATALGVNKNVRVALIRIGVVLGKGGALAKMIPLFMMYAGGPLGSGKQWFSWIHLDDIVDLIYEALMNPSYKGVINGTAPNPVKLSELCERLGAAMGRPSWLPVPDFALKAVLGDGASVVLEGQRVVPARAKELGFSFKYPSVKDALKAILSQGNQI

Homology

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BLAST of CmaCh11G010710 vs. ExPASy Swiss-Prot
Match: Q9SJU9 (Epimerase family protein SDR39U1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GC1 PE=2 SV=2)

HSP 1 Score: 510.0 bits (1312), Expect = 2.2e-143
Identity = 254/346 (73.41%), Postives = 297/346 (85.84%), Query Frame = 0


Query: 3   LSGATSLSWSRTVSHSIRIPQHLAICG-KRLQVFCAIDETEMKNQLTVSITGATGFIGRR 62
           L   TSLS S  +S ++ +P+  ++ G +R  V C+   ++ ++Q+TVS+TGATGFIGRR
Sbjct: 4   LCSPTSLSSSFALSSALLVPRSFSMPGTRRFMVLCS---SQKESQMTVSVTGATGFIGRR 63

Query: 63  LVRRLNADNHNIRVLTRSKSKAELIFPAREFPGIVIAEEPGWKDCIQGSDGVVNLAGMPI 122
           LV+RL ADNH IRVLTRSKSKAE IFPA++FPGIVIAEE  WK+C+QGS  VVNLAG+PI
Sbjct: 64  LVQRLRADNHAIRVLTRSKSKAEQIFPAKDFPGIVIAEESEWKNCVQGSTAVVNLAGLPI 123

Query: 123 STRWSSEIKKEIKQSRIRVTSKVVRLINNAPDAARPTVLVSSTAVGYYGTSETAIFDERS 182
           STRWS EIKKEIK SRIRVTSKVV LINN+P  ARPTVLVS+TAVGYYGTSET +FDE S
Sbjct: 124 STRWSPEIKKEIKGSRIRVTSKVVDLINNSPAEARPTVLVSATAVGYYGTSETGVFDENS 183

Query: 183 PSGNDYLAEVCREWEATALGVNKNVRVALIRIGVVLGK-GGALAKMIPLFMMYAGGPLGS 242
           PSG DYLAEVCREWE TAL  NK+VRVALIRIGVVLGK GGALA MIP F M+AGGPLGS
Sbjct: 184 PSGKDYLAEVCREWEGTALKANKDVRVALIRIGVVLGKDGGALAMMIPFFQMFAGGPLGS 243

Query: 243 GKQWFSWIHLDDIVDLIYEALMNPSYKGVINGTAPNPVKLSELCERLGAAMGRPSWLPVP 302
           G+QWFSWIH+DD+V+LIYEAL NPSYKGVINGTAPNPV+L E+C++LG+ + RPSWLPVP
Sbjct: 244 GQQWFSWIHVDDLVNLIYEALTNPSYKGVINGTAPNPVRLGEMCQQLGSVLSRPSWLPVP 303

Query: 303 DFALKAVLGDGASVVLEGQRVVPARAKELGFSFKYPSVKDALKAIL 347
           DFALKA+LG+GA+VVLEGQ+V+P RAKELGF FKY  VKDAL+AI+
Sbjct: 304 DFALKALLGEGATVVLEGQKVLPVRAKELGFEFKYKYVKDALRAIM 346

[Close]

BLAST of CmaCh11G010710 vs. ExPASy Swiss-Prot
Match: P73467 (Epimerase family protein slr1223 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1223 PE=3 SV=2)

HSP 1 Score: 286.2 bits (731), Expect = 5.1e-76
Identity = 150/307 (48.86%), Postives = 200/307 (65.15%), Query Frame = 0


Query: 47  LTVSITGATGFIGRRLVRRLNADNHNIRVLTRSKSKAELIFPAREFPGI-VIAEEP---- 106
           + + +TGATGF+G  LV  L+   H + +L RS SKA+ +F    FP +  IA E     
Sbjct: 1   MKIILTGATGFVGCSLVPLLHQQGHELTLLVRSVSKAQRLFAPGSFPQLKAIAYEATKSG 60

Query: 107 GWKDCIQGSDGVVNLAGMPISTRWSSEIKKEIKQSRIRVTSKVVRLINNAPDAARPTVLV 166
            W+  + G D V+NLAG PIS RW+   K EI  SR   T K+V  I  A    +P V++
Sbjct: 61  DWQKVVDGQDAVINLAGEPISERWTEAYKAEIFDSRKLGTEKLVEAIAKAD--RKPQVMI 120

Query: 167 SSTAVGYYGTSETAIFDERSPSGNDYLAEVCREWEATALGVNK-NVRVALIRIGVVLG-K 226
           S +A+GYYGTSETA F E S  G+D+LAEVC+ WE  A  V +  VR+ + RIG+VLG  
Sbjct: 121 SGSAIGYYGTSETATFTESSKPGDDFLAEVCQAWENAAHQVEQLGVRLVVFRIGIVLGAD 180

Query: 227 GGALAKMIPLFMMYAGGPLGSGKQWFSWIHLDDIVDLIYEALMNPSYKGVINGTAPNPVK 286
           GGALAKM+P F ++AGGPLGSG+QWFSWI   D++ LI +AL + + +G  N TAPNPVK
Sbjct: 181 GGALAKMLPPFKLFAGGPLGSGEQWFSWIDRRDLIALIDKALTDSTLRGTYNATAPNPVK 240

Query: 287 LSELCERLGAAMGRPSWLPVPDFALKAVLGDGASVVLEGQRVVPARAKELGFSFKYPSVK 346
           + E C  LG  + RPSWLPVPD AL+ +LG+GA +VLEGQ V+P    +  F F+ P ++
Sbjct: 241 MKEFCHTLGKVLARPSWLPVPDIALELLLGEGAKLVLEGQEVLPGAISKTDFQFQAPDLE 300

[Close]

BLAST of CmaCh11G010710 vs. ExPASy Swiss-Prot
Match: P77775 (Epimerase family protein YfcH OS=Escherichia coli (strain K12) OX=83333 GN=yfcH PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.9e-51
Identity = 118/303 (38.94%), Postives = 178/303 (58.75%), Query Frame = 0


Query: 47  LTVSITGATGFIGRRLVRRLNADNHNIRVLTRSKSKAELIFPAREFPGIVIAEEPGWKDC 106
           + + ITG TG IGR L+ RL    H I V+TR+  KA  +      P + + +    +  
Sbjct: 1   MNIVITGGTGLIGRHLIPRLLELGHQITVVTRNPQKASSVLG----PRVTLWQGLADQSN 60

Query: 107 IQGSDGVVNLAGMPIS-TRWSSEIKKEIKQSRIRVTSKVVRLINNAPDAARPTVLVSSTA 166
           + G D V+NLAG PI+  RW+ E K+ + QSR  +T K+V LI NA D   P+VL+S +A
Sbjct: 61  LNGVDAVINLAGEPIADKRWTHEQKERLCQSRWNITQKLVDLI-NASDTP-PSVLISGSA 120

Query: 167 VGYYGTSETAIFDERSPSGNDYLAEVCREWEATALGVNKN-VRVALIRIGVVLG-KGGAL 226
            GYYG     +  E  P  N++  ++C  WE  A     +  RV L+R GVVL   GG L
Sbjct: 121 TGYYGDLGEVVVTEEEPPHNEFTHKLCARWEEIACRAQSDKTRVCLLRTGVVLAPDGGIL 180

Query: 227 AKMIPLFMMYAGGPLGSGKQWFSWIHLDDIVDLIYEALMNPSYKGVINGTAPNPVKLSEL 286
            KM+P F +  GGP+GSG+Q+ +WIH+DD+V+ I   L N   +G  N  +P PV+  + 
Sbjct: 181 GKMLPPFRLGLGGPIGSGRQYLAWIHIDDMVNGILWLLDN-ELRGPFNMVSPYPVRNEQF 240

Query: 287 CERLGAAMGRPSWLPVPDFALKAVLGDGASVVLEGQRVVPARAKELGFSFKYPSVKDALK 346
              LG A+ RP+ L VP  A++ ++G+ + +VL GQR +P R +E GF+F++  +++AL 
Sbjct: 241 AHALGHALHRPAILRVPATAIRLLMGESSVLVLGGQRALPKRLEEAGFAFRWYDLEEALA 296

[Close]

BLAST of CmaCh11G010710 vs. ExPASy Swiss-Prot
Match: Q9NRG7 (Epimerase family protein SDR39U1 OS=Homo sapiens OX=9606 GN=SDR39U1 PE=1 SV=3)

HSP 1 Score: 186.4 bits (472), Expect = 5.5e-46
Identity = 109/307 (35.50%), Postives = 166/307 (54.07%), Query Frame = 0


Query: 47  LTVSITGATGFIGRRLVRRLNADNHNIRVLTRSKSKAELIFPAREFPGIVIAEEPGWKDC 106
           + V + G TGFIG  L + LNA  H + +++R      + +      G            
Sbjct: 1   MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGRITWDELAASG------------ 60

Query: 107 IQGSDGVVNLAGMPIST---RWSSEIKKEIKQSRIRVTSKVVRLINNAPDAARPTVLVSS 166
           +   D  VNLAG  I     RW+   +KE+  SR+  T  + + I  AP   +  VLV  
Sbjct: 61  LPSCDAAVNLAGENILNPLRRWNETFQKEVIGSRLETTQLLAKAITKAPQPPKAWVLV-- 120

Query: 167 TAVGYYGTSETAIFDERSPSGN-DYLAEVCREWEATALGVNKNVRVALIRIGVVLGK-GG 226
           T V YY  S TA +DE SP G+ D+ + +  +WEA A     + R  ++R GVVLG+ GG
Sbjct: 121 TGVAYYQPSLTAEYDEDSPGGDFDFFSNLVTKWEAAARLPGDSTRQVVVRSGVVLGRGGG 180

Query: 227 ALAKMIPLFMMYAGGPLGSGKQWFSWIHLDDIVDLIYEALMNPSYKGVINGTAPNPVKLS 286
           A+  M+  F +  GGP+GSG Q+F WIH+ D+  ++  AL      GV+NG AP+    +
Sbjct: 181 AMGHMLLPFRLGLGGPIGSGHQFFPWIHIGDLAGILTHALEANHVHGVLNGVAPSSATNA 240

Query: 287 ELCERLGAAMGRPSWLPVPDFALKAVLG-DGASVVLEGQRVVPARAKELGFSFKYPSVKD 346
           E  + LGAA+GR +++P+P   ++AV G   A ++LEGQ+V+P R    G+ + +P +  
Sbjct: 241 EFAQTLGAALGRRAFIPLPSAVVQAVFGRQRAIMLLEGQKVIPQRTLATGYQYSFPELGA 293

Query: 347 ALKAILS 348
           ALK I++
Sbjct: 301 ALKEIVA 293

[Close]

BLAST of CmaCh11G010710 vs. ExPASy Swiss-Prot
Match: Q5M8N4 (Epimerase family protein SDR39U1 OS=Mus musculus OX=10090 GN=Sdr39u1 PE=1 SV=2)

HSP 1 Score: 186.4 bits (472), Expect = 5.5e-46
Identity = 105/307 (34.20%), Postives = 171/307 (55.70%), Query Frame = 0


Query: 47  LTVSITGATGFIGRRLVRRLNADNHNIRVLTRSKSKAELIFPAREFPGIVIAEEPGWKDC 106
           + V + G TGFIG  + + L    H +++++R      + +      G+ +         
Sbjct: 1   MRVLVGGGTGFIGTAVTQLLRGRGHEVKLVSRQPGPGRITWSELSESGLPLC-------- 60

Query: 107 IQGSDGVVNLAGMPIST---RWSSEIKKEIKQSRIRVTSKVVRLINNAPDAARPTVLVSS 166
               D V+NLAG  I     RW+   +KE+  SR+  T  + + I       +  +LV  
Sbjct: 61  ----DVVINLAGENILNPLRRWNETFQKEVLTSRLDTTHLLAKAITETAHPPQAWILV-- 120

Query: 167 TAVGYYGTSETAIFDERSPSGN-DYLAEVCREWEATALGVNKNVRVALIRIGVVLGK-GG 226
           T V YY  S T  +DE SP GN D+ + +  +WEA A    ++ R  ++R GVVLG+ GG
Sbjct: 121 TGVAYYQPSLTKEYDEDSPGGNFDFFSNLVTKWEAAARLPGESTRQVVVRSGVVLGRGGG 180

Query: 227 ALAKMIPLFMMYAGGPLGSGKQWFSWIHLDDIVDLIYEALMNPSYKGVINGTAP-NPVKL 286
           A++ M+  F +  GGP+GSG+Q+F WIH+ D+  ++  AL     +GV+NG AP +    
Sbjct: 181 AISHMLLPFRLGLGGPIGSGRQFFPWIHIGDLAGILNYALEANHVQGVLNGVAPASTTTN 240

Query: 287 SELCERLGAAMGRPSWLPVPDFALKAVLGDGASVVLEGQRVVPARAKELGFSFKYPSVKD 346
           +E  + LGAA+GRP+++PVP   ++AV G+ A ++LEGQ+VVP R    G+ + +P ++ 
Sbjct: 241 AEFAQALGAALGRPAFIPVPSTVVRAVFGERAIMLLEGQKVVPRRTLATGYQYSFPELRA 293

Query: 347 ALKAILS 348
           ALK +++
Sbjct: 301 ALKDVVA 293

[Close]

BLAST of CmaCh11G010710 vs. TAIR 10
Match: AT2G21280.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 510.0 bits (1312), Expect = 1.5e-144
Identity = 254/346 (73.41%), Postives = 297/346 (85.84%), Query Frame = 0


Query: 3   LSGATSLSWSRTVSHSIRIPQHLAICG-KRLQVFCAIDETEMKNQLTVSITGATGFIGRR 62
           L   TSLS S  +S ++ +P+  ++ G +R  V C+   ++ ++Q+TVS+TGATGFIGRR
Sbjct: 4   LCSPTSLSSSFALSSALLVPRSFSMPGTRRFMVLCS---SQKESQMTVSVTGATGFIGRR 63

Query: 63  LVRRLNADNHNIRVLTRSKSKAELIFPAREFPGIVIAEEPGWKDCIQGSDGVVNLAGMPI 122
           LV+RL ADNH IRVLTRSKSKAE IFPA++FPGIVIAEE  WK+C+QGS  VVNLAG+PI
Sbjct: 64  LVQRLRADNHAIRVLTRSKSKAEQIFPAKDFPGIVIAEESEWKNCVQGSTAVVNLAGLPI 123

Query: 123 STRWSSEIKKEIKQSRIRVTSKVVRLINNAPDAARPTVLVSSTAVGYYGTSETAIFDERS 182
           STRWS EIKKEIK SRIRVTSKVV LINN+P  ARPTVLVS+TAVGYYGTSET +FDE S
Sbjct: 124 STRWSPEIKKEIKGSRIRVTSKVVDLINNSPAEARPTVLVSATAVGYYGTSETGVFDENS 183

Query: 183 PSGNDYLAEVCREWEATALGVNKNVRVALIRIGVVLGK-GGALAKMIPLFMMYAGGPLGS 242
           PSG DYLAEVCREWE TAL  NK+VRVALIRIGVVLGK GGALA MIP F M+AGGPLGS
Sbjct: 184 PSGKDYLAEVCREWEGTALKANKDVRVALIRIGVVLGKDGGALAMMIPFFQMFAGGPLGS 243

Query: 243 GKQWFSWIHLDDIVDLIYEALMNPSYKGVINGTAPNPVKLSELCERLGAAMGRPSWLPVP 302
           G+QWFSWIH+DD+V+LIYEAL NPSYKGVINGTAPNPV+L E+C++LG+ + RPSWLPVP
Sbjct: 244 GQQWFSWIHVDDLVNLIYEALTNPSYKGVINGTAPNPVRLGEMCQQLGSVLSRPSWLPVP 303

Query: 303 DFALKAVLGDGASVVLEGQRVVPARAKELGFSFKYPSVKDALKAIL 347
           DFALKA+LG+GA+VVLEGQ+V+P RAKELGF FKY  VKDAL+AI+
Sbjct: 304 DFALKALLGEGATVVLEGQKVLPVRAKELGFEFKYKYVKDALRAIM 346

[Close]

BLAST of CmaCh11G010710 vs. TAIR 10
Match: AT4G33360.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 1.3e-05
Identity = 56/233 (24.03%), Postives = 101/233 (43.35%), Query Frame = 0


Query: 41  TEMKNQLTVSITGATGFIGRRLVRRLNADNHNIRVLTRSKSKAELIFPAREFPGIVIAEE 100
           TE +N + + +TG+TG++G RL   L    H++R L R  S    + P  E     + + 
Sbjct: 8   TETEN-MKILVTGSTGYLGARLCHVLLRRGHSVRALVRRTSDLSDLPPEVELAYGDVTDY 67

Query: 101 PGWKDCIQGSDGVVNLAGMPISTRWSSEIKKEIKQSRIRVTSKVVRLINNAPDAARPT-- 160
               D   G D V + A   +   W  +          R  S  V  + N  +A + T  
Sbjct: 68  RSLTDACSGCDIVFHAAA--LVEPWLPDPS--------RFISVNVGGLKNVLEAVKETKT 127

Query: 161 --VLVSSTAVGYYGTSETAIFDERSPSGNDYLAEVCREWE-----ATALGVN---KNVRV 220
              ++ +++    G+++ ++ +E       +    C E+E     A  + +N   + V +
Sbjct: 128 VQKIIYTSSFFALGSTDGSVANENQVHNERFF---CTEYERSKAVADKMALNAASEGVPI 187

Query: 221 ALIRIGVVLGKG-----GALAKM-IPLFMMYAGGPLGSGKQWFSWIHLDDIVD 256
            L+  GV+ G G       +A+M I  F     G +GSG   +S+ H+DD+V+
Sbjct: 188 ILLYPGVIFGPGKLTSANMVARMLIERFNGRLPGYIGSGTDRYSFSHVDDVVE 226

[Close]

BLAST of CmaCh11G010710 vs. TAIR 10
Match: AT4G33360.2 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 1.3e-05
Identity = 56/233 (24.03%), Postives = 101/233 (43.35%), Query Frame = 0


Query: 41  TEMKNQLTVSITGATGFIGRRLVRRLNADNHNIRVLTRSKSKAELIFPAREFPGIVIAEE 100
           TE +N + + +TG+TG++G RL   L    H++R L R  S    + P  E     + + 
Sbjct: 8   TETEN-MKILVTGSTGYLGARLCHVLLRRGHSVRALVRRTSDLSDLPPEVELAYGDVTDY 67

Query: 101 PGWKDCIQGSDGVVNLAGMPISTRWSSEIKKEIKQSRIRVTSKVVRLINNAPDAARPT-- 160
               D   G D V + A   +   W  +          R  S  V  + N  +A + T  
Sbjct: 68  RSLTDACSGCDIVFHAAA--LVEPWLPDPS--------RFISVNVGGLKNVLEAVKETKT 127

Query: 161 --VLVSSTAVGYYGTSETAIFDERSPSGNDYLAEVCREWE-----ATALGVN---KNVRV 220
              ++ +++    G+++ ++ +E       +    C E+E     A  + +N   + V +
Sbjct: 128 VQKIIYTSSFFALGSTDGSVANENQVHNERFF---CTEYERSKAVADKMALNAASEGVPI 187

Query: 221 ALIRIGVVLGKG-----GALAKM-IPLFMMYAGGPLGSGKQWFSWIHLDDIVD 256
            L+  GV+ G G       +A+M I  F     G +GSG   +S+ H+DD+V+
Sbjct: 188 ILLYPGVIFGPGKLTSANMVARMLIERFNGRLPGYIGSGTDRYSFSHVDDVVE 226

[Close]

BLAST of CmaCh11G010710 vs. TAIR 10
Match: AT4G33360.3 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 46.6 bits (109), Expect = 4.8e-05
Identity = 53/227 (23.35%), Postives = 97/227 (42.73%), Query Frame = 0


Query: 47  LTVSITGATGFIGRRLVRRLNADNHNIRVLTRSKSKAELIFPAREFPGIVIAEEPGWKDC 106
           + + +TG+TG++G RL   L    H++R L R  S    + P  E     + +     D 
Sbjct: 1   MKILVTGSTGYLGARLCHVLLRRGHSVRALVRRTSDLSDLPPEVELAYGDVTDYRSLTDA 60

Query: 107 IQGSDGVVNLAGMPISTRWSSEIKKEIKQSRIRVTSKVVRLINNAPDAARPT----VLVS 166
             G D V + A   +   W  +          R  S  V  + N  +A + T     ++ 
Sbjct: 61  CSGCDIVFHAAA--LVEPWLPDPS--------RFISVNVGGLKNVLEAVKETKTVQKIIY 120

Query: 167 STAVGYYGTSETAIFDERSPSGNDYLAEVCREWE-----ATALGVN---KNVRVALIRIG 226
           +++    G+++ ++ +E       +    C E+E     A  + +N   + V + L+  G
Sbjct: 121 TSSFFALGSTDGSVANENQVHNERFF---CTEYERSKAVADKMALNAASEGVPIILLYPG 180

Query: 227 VVLGKG-----GALAKM-IPLFMMYAGGPLGSGKQWFSWIHLDDIVD 256
           V+ G G       +A+M I  F     G +GSG   +S+ H+DD+V+
Sbjct: 181 VIFGPGKLTSANMVARMLIERFNGRLPGYIGSGTDRYSFSHVDDVVE 214

The following BLAST results are available for this feature:

BLAST of CmaCh11G010710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJU9	2.2e-143	73.41	Epimerase family protein SDR39U1 homolog, chloroplastic OS=Arabidopsis thaliana ...	[more]
P73467	5.1e-76	48.86	Epimerase family protein slr1223 OS=Synechocystis sp. (strain PCC 6803 / Kazusa)...	[more]
P77775	1.9e-51	38.94	Epimerase family protein YfcH OS=Escherichia coli (strain K12) OX=83333 GN=yfcH ...	[more]
Q9NRG7	5.5e-46	35.50	Epimerase family protein SDR39U1 OS=Homo sapiens OX=9606 GN=SDR39U1 PE=1 SV=3	[more]
Q5M8N4	5.5e-46	34.20	Epimerase family protein SDR39U1 OS=Mus musculus OX=10090 GN=Sdr39u1 PE=1 SV=2	[more]

BLAST of CmaCh11G010710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21280.1	1.5e-144	73.41	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G33360.1	1.3e-05	24.03	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G33360.2	1.3e-05	24.03	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G33360.3	4.8e-05	23.35	NAD(P)-binding Rossmann-fold superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013549	Domain of unknown function DUF1731	PFAM	PF08338	DUF1731	coord: 299..345 e-value: 2.9E-19 score: 68.6
IPR001509	NAD-dependent epimerase/dehydratase	PFAM	PF01370	Epimerase	coord: 50..265 e-value: 6.7E-18 score: 65.0
None	No IPR available	GENE3D	3.40.50.720		coord: 49..350 e-value: 1.5E-75 score: 256.5
None	No IPR available	PANTHER	PTHR11092	SUGAR NUCLEOTIDE EPIMERASE RELATED	coord: 45..347
None	No IPR available	CDD	cd05242	SDR_a8	coord: 48..346 e-value: 3.92651E-131 score: 374.643
IPR010099	Epimerase family protein SDR39U1	TIGRFAM	TIGR01777	TIGR01777	coord: 49..342 e-value: 3.1E-103 score: 343.3
IPR036291	NAD(P)-binding domain superfamily	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 42..346

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G010710.1	CmaCh11G010710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity