CmaCh11G010560 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G010560
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Pectin lyase-like superfamily protein
Location	Cma_Chr11: 5799620 .. 5800035 (-)
RNA-Seq Expression	CmaCh11G010560
Synteny	CmaCh11G010560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAAAGCTTCCGGGGTAAATGCTCATACTAATTTTAAAAAGAACTCATAATTTGAGTTAGTTTTAACACGGTAGTGTTTTTTTGTTTGTTTATTTAAAATGAGCCGAATTTGAAGTTCAATTTCATCACATATTCAATAGTGAAGGACATAACTTTATTGGATAGCAAGAATTTTCATATCAATGTTTTGGGCTGCAAGAATCTTACCTTCGATCACCTGACAATTACTGCACCAGACCATAGTCCCAACACCGATGGAATTCACTTGGGTAATTCAGAAGAAATTAGCATTATCAATACCGTAATCGTAACGGGAAATGATTGTATATCTGTAGGATATAGTAACAAAGAAATAACTATCAGTGATGTTACTTGCGGACCGGGACATGACATTAACATAGGCAAGTGGTAG

mRNA sequence

ATGCAAAAAGCTTCCGGGCCGAATTTGAAGTTCAATTTCATCACATATTCAATAGTGAAGGACATAACTTTATTGGATAGCAAGAATTTTCATATCAATGTTTTGGGCTGCAAGAATCTTACCTTCGATCACCTGACAATTACTGCACCAGACCATAGTCCCAACACCGATGGAATTCACTTGGGTAATTCAGAAGAAATTAGCATTATCAATACCGTAATCGTAACGGGAAATGATTGTATATCTGTAGGATATAGTAACAAAGAAATAACTATCAGTGATGTTACTTGCGGACCGGGACATGACATTAACATAGGCAAGTGGTAG

Coding sequence (CDS)

ATGCAAAAAGCTTCCGGGCCGAATTTGAAGTTCAATTTCATCACATATTCAATAGTGAAGGACATAACTTTATTGGATAGCAAGAATTTTCATATCAATGTTTTGGGCTGCAAGAATCTTACCTTCGATCACCTGACAATTACTGCACCAGACCATAGTCCCAACACCGATGGAATTCACTTGGGTAATTCAGAAGAAATTAGCATTATCAATACCGTAATCGTAACGGGAAATGATTGTATATCTGTAGGATATAGTAACAAAGAAATAACTATCAGTGATGTTACTTGCGGACCGGGACATGACATTAACATAGGCAAGTGGTAG

Protein sequence

MQKASGPNLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEISIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIGKW

Homology

[Close]

BLAST of CmaCh11G010560 vs. ExPASy Swiss-Prot
Match: Q40312 (Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.9e-30
Identity = 57/99 (57.58%), Postives = 75/99 (75.76%), Query Frame = 0


Query: 8   NLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEI 67
           N  FNF+  SIV+ +T  DSKNFH+ V GCKN+TFD  TITAP  SPNTDGIH+G S ++
Sbjct: 149 NFGFNFVNNSIVRGVTSKDSKNFHVMVFGCKNITFDGFTITAPGDSPNTDGIHMGKSTDV 208

Query: 68  SIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
            I+NT I TG+DC+S+G  +K+IT+  V CGPGH +++G
Sbjct: 209 KILNTNIGTGDDCVSIGDGSKQITVQGVNCGPGHGLSVG 247

[Close]

BLAST of CmaCh11G010560 vs. ExPASy Swiss-Prot
Match: P24548 (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-29
Identity = 58/104 (55.77%), Postives = 80/104 (76.92%), Query Frame = 0


Query: 3   KASGPNLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLG 62
           K    NL+   +T SI++D+T LDSKNFH+NV+GCKNLTF+   I+A + S NTDGIH+G
Sbjct: 104 KTLSMNLRLYAVTNSILRDVTTLDSKNFHVNVIGCKNLTFERFKISAAETSINTDGIHIG 163

Query: 63  NSEEISIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
            S+ ++IINT I TG+DCIS+G  +K I I+++TCGPGH I++G
Sbjct: 164 RSDGVNIINTEIKTGDDCISLGDGSKNINITNITCGPGHGISVG 207

[Close]

BLAST of CmaCh11G010560 vs. ExPASy Swiss-Prot
Match: Q6H9K0 (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 7.1e-29
Identity = 57/104 (54.81%), Postives = 82/104 (78.85%), Query Frame = 0


Query: 3   KASGPNLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLG 62
           K +  NL+F+F+ +++V+DIT L+SK FHINVL C+++TF H+T+TAP  S NTDGIH+G
Sbjct: 125 KHAAMNLRFDFLKHAMVRDITSLNSKMFHINVLECEDITFQHVTVTAPGTSINTDGIHVG 184

Query: 63  NSEEISIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
            S+ ++I NT I TG+DCIS+G  ++ +TI+ V CGPGH I+IG
Sbjct: 185 ISKGVTITNTKIATGDDCISIGPGSQNVTITQVNCGPGHGISIG 228

[Close]

BLAST of CmaCh11G010560 vs. ExPASy Swiss-Prot
Match: Q39766 (Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 7.1e-29
Identity = 56/99 (56.57%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 8   NLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEI 67
           N++F+F+T ++++DIT  DSK FHINV  CKN+T + L I APD SPNTDGIH+G SE +
Sbjct: 151 NIRFDFVTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGV 210

Query: 68  SIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
           +II + I TG+DCIS+G   K + I ++TCGPGH I+IG
Sbjct: 211 NIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIG 249

[Close]

BLAST of CmaCh11G010560 vs. ExPASy Swiss-Prot
Match: Q39786 (Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 9.2e-29
Identity = 56/99 (56.57%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 8   NLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEI 67
           N++F+F+T ++++DIT  DSK FHINV  CKN+T + L I APD SPNTDGIH+G SE +
Sbjct: 151 NIRFDFLTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGV 210

Query: 68  SIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
           +II + I TG+DCIS+G   K + I ++TCGPGH I+IG
Sbjct: 211 NIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIG 249

[Close]

BLAST of CmaCh11G010560 vs. TAIR 10
Match: AT3G07840.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 124.4 bits (311), Expect = 5.6e-29
Identity = 53/99 (53.54%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 8   NLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEI 67
           +++F+F+  + ++DI+ +D+KNFHINVLG KN+TFD++ + AP  SPNTDGIHLG SE +
Sbjct: 141 SIRFDFVENAEIRDISSIDAKNFHINVLGAKNMTFDNVKVIAPAESPNTDGIHLGRSEGV 200

Query: 68  SIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
            I+N+ I TG+DCISVG   K + + +V CGPGH I++G
Sbjct: 201 KILNSKIATGDDCISVGDGMKNLHVENVMCGPGHGISVG 239

[Close]

BLAST of CmaCh11G010560 vs. TAIR 10
Match: AT3G07820.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 124.0 bits (310), Expect = 7.3e-29
Identity = 54/99 (54.55%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 8   NLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEI 67
           +++F+FI  S ++DI+ +D+KNFHINVLG KN+T +++ I AP+ SPNTDGIHLG S+ +
Sbjct: 140 SIRFDFILNSEIRDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDSPNTDGIHLGRSDGV 199

Query: 68  SIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
            I+N+ I TG+DCISVG   K + +  VTCGPGH I++G
Sbjct: 200 KILNSFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVG 238

[Close]

BLAST of CmaCh11G010560 vs. TAIR 10
Match: AT3G07830.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 122.5 bits (306), Expect = 2.1e-28
Identity = 53/99 (53.54%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 8   NLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEI 67
           +++F+F+T + ++DI+ +D+KNFHINV+G KN+TFD++ I AP  SPNTDGIHLG S  +
Sbjct: 141 SIRFDFVTNAEIRDISSIDAKNFHINVIGAKNMTFDNVKIMAPAESPNTDGIHLGRSVGV 200

Query: 68  SIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
           SIIN+ I TG+DC+SVG     + + +V CGPGH I++G
Sbjct: 201 SIINSRISTGDDCVSVGDGMVNLLVKNVVCGPGHGISVG 239

[Close]

BLAST of CmaCh11G010560 vs. TAIR 10
Match: AT5G48140.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 120.9 bits (302), Expect = 6.1e-28
Identity = 54/99 (54.55%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 8   NLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEI 67
           +++F+F+T + ++ IT LD+K+FHINV+G KN+TF+ + I AP  SPNTDGIH+G S+ I
Sbjct: 140 SIRFDFVTDAKIRGITSLDAKHFHINVIGAKNVTFEDVKIIAPAESPNTDGIHVGRSDGI 199

Query: 68  SIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
            IIN+ I TG+DC+SVG   K + +  VTCGPGH I+IG
Sbjct: 200 KIINSFISTGDDCVSVGDGMKNLLVERVTCGPGHGISIG 238

[Close]

BLAST of CmaCh11G010560 vs. TAIR 10
Match: AT3G07850.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-22
Identity = 45/99 (45.45%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 8   NLKFNFITYSIVKDITLLDSKNFHINVLGCKNLTFDHLTITAPDHSPNTDGIHLGNSEEI 67
           N++F  +T S +  IT  +SK FH+N+L CKN+T   + I AP  S NTDGIH+G S  +
Sbjct: 191 NIRFTGLTNSKINSITSTNSKLFHMNILNCKNITLSDIGIDAPPESLNTDGIHIGRSNGV 250

Query: 68  SIINTVIVTGNDCISVGYSNKEITISDVTCGPGHDINIG 107
           ++I   I TG+DC+S+G   + + + +V CGPGH I+IG
Sbjct: 251 NLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIG 289

The following BLAST results are available for this feature:

BLAST of CmaCh11G010560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q40312	2.9e-30	57.58	Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1	[more]
P24548	1.4e-29	55.77	Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1	[more]
Q6H9K0	7.1e-29	54.81	Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 S...	[more]
Q39766	7.1e-29	56.57	Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1	[more]
Q39786	9.2e-29	56.57	Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1	[more]

BLAST of CmaCh11G010560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07840.1	5.6e-29	53.54	Pectin lyase-like superfamily protein	[more]
AT3G07820.1	7.3e-29	54.55	Pectin lyase-like superfamily protein	[more]
AT3G07830.1	2.1e-28	53.54	Pectin lyase-like superfamily protein	[more]
AT5G48140.1	6.1e-28	54.55	Pectin lyase-like superfamily protein	[more]
AT3G07850.1	1.3e-22	45.45	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 8..106 e-value: 4.1E-30 score: 105.0
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 2..108 e-value: 5.0E-30 score: 106.4
None	No IPR available	PANTHER	PTHR31375:SF248	POLYGALACTURONASE	coord: 5..107
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 5..107
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 8..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G010560.1	CmaCh11G010560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity