CmaCh11G009910 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G009910
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein translocase subunit SecA
Location	Cma_Chr11: 5288547 .. 5292316 (+)
RNA-Seq Expression	CmaCh11G009910
Synteny	CmaCh11G009910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAACCCTAATTCCAACCTGAAGAAGCCGATTCAGAACTCTTGCATTTTCCGAAAATGCGTTCGTCCTCTCGATTCCTAATCAATCTTTCCGAGACAAACACATCTAATCTCAATTTCCCCTTCTCTTCTTTTGATCGCAGTCCCCGAAATTGTGTTTCGGCTCTGTTACAATCACGGTCCATCTTCTCCACGACGCAGCTTTACGATTCATGGATGGATAAGATCAAGGGAGCCTTCACTGGAAAGAAGAGCCCTTCCGAAGGAACCGAAATCAGCTCTGAGTCCTTTACTCTCCTCCGTACGCCTAATTTCCCGTACTTGAAGTTGTATTAATTCAATTGCACGATATTATACATAAACATTGCGACTGATGATTAGTTTATGACCAAATTTAATTATTTGTCTGTTTATTTATCTCAGGGTTTGCTGAAGAATTGAAAAATGCCCGAAGAGTGGGGGCATTCAAGCAATATATAGTAGGAAGAAGTAGTGAAGCTACCTTTGCGGATGCTTTTGAGAAGCAGGAAGCAATTATTCGCTATTTGGGAGGATTTGATCCCACTGGGGAGGTTGGTTTTCTAGCAATTTGCTTTCTAATAATTACTTATTTGTTTGAGTTGTAATGGAATAAGTTATGATGCCTGACCTTGATGTAATGGTTCTTACACTGCCCATAAATGGAGTATTTTTTAATCTTCACTATGAGCCACTGGTAAAGTAGAAAACAAGAGGGAAAAATAGGACAATGAGATTAGTTTAGTTTTGGCCAAATTTAGAAATGTATATTTTACTGCTGAATAATTTGAGCTGCCACCATTTTTCCAGAAGATTGAAAACATGGGTCTCCTTTTCCAGATTTTCTAGCACTCATTGTTCTTGTAGGACAAAATTTCGTTAATTCAGTGAATATAGGAAAGGCAATGAAACCTTTCACTGAACCCAATGTGGTTACCAAAAAAACCTCAAACTAGCACTAATATCTGTTGAATTAAGTGAATAAGCTGAAACTCATTCTCGCCTAATCAAAAGACAAACCCTCGTAGGAGTTCCTAACTTACTCATAATTTAGATTGAGTCACATATGGTCATCTTATGAAACATTAATTCTCAATTAACGAATTTATAAAGAAAGACTAAATATTTTGTTGTCTAGTCTTAAACAAACTTTTTTTGTAGGATACCCCACTCACATGTCTCCAAGTGAATGATTTATAACCATTGCAAAATAGGGAGCTTAAGTGAATAAAGCCCCTGTTTTGTTTAATCCAATTGACCAAATGGGAGCAAAGAAAGTTGTTGGGGTCTTTCTGCAACCATTACTGTGTTTAATGGTTTGAAATGTGTTTTTTGAAGGGGCTTAAGCCTGAAGTGAAAAAAAGCAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNAATTTTTTTTTTTTTTTTTTTTTTTTGTCTTTTTTTCTTTTTGGCTTACAATATAAAAATAGAAAAATGTAAAAAAAAGATTCTAAATCTGAAAAATGTAGTGAAAGGAAAAATAAAAATGAGAGAGAGAATATAGTATAATGTATAATAAGAATGGAGAAATTTTAAGAAATAGAGCTTTTGTAAGAGATGATTGAGAGGAAAGAGTGTTTTTAAGAGTGTGTTTAATTTTCTCAAAAAAGATTACAAAAAGGACGAGGTATTGATGCATGCTGTGTGCCTCGATGTGCTTCAGTGAGGGTACAATGCTTCAATGCTTCACTTTAAAAACACTGGGTTTGAAATTGATTTAGTTGTTTCACGTTTTGGTACTACAACATTTGATGATTAAGAAATACGTTACATAACTTCACTTCCTTATTGTTCGGAACCAGCTTTGGGATTCATGACCACTTGGTTGAACCGGAAGGGCTTTCCATTATGATCAAGTCTTTCAGCACTTTGACTGCTATTTGATTTCTTCAATTGAATTCTTAATCTTATTTTCTGTCAACTGACAGTCCGGCATGATTTAGAGTTGTTTCCATGGGCCTATAACACATTCTTCTTTTATTTGGTGAATTAGCTCCATTTTCTGTCTATGATAATTCATTAGCTGGGTTTTTATCATCTGAGTTGGTGAAAATAATAATGAATAGAGTTACGCTAACCTTTATTTGTTTCCAACAGTTTCCGTATTAATTTGCGCTTCTGGATAAGTTTTCTGATTGTGATCTTAGGCTTCCTGATCTTTAGAACATCCAAACCAGCCAAAAGCAAGAAGCAGCAAAAAAGTGTAATTGCACGATCGCCGATGTTGAGAATACACTGGCAAAGTTTATCTGGGCTAAAGAAGCACAAAAAAAGATTGAGAAGTTGAAGGAAGAAGGAAAACCAATGCCTAAGAGCTTAGCTGAGGTAAATCTTTATACATATAGTTCCATGTTCTTAAGAACTAAAGTTTATTGTCAACATTGCCATATCTAGCAAAAGAAAGTAGTTATTGTATGGATACATTGCAAAACTCTTATCCTTTTCTGTTAATACGACTCGGTTCCTTCTGCTTTTGTACCACTCTGAGAACTGACGAGGGCTTGGAGTTTCCTGTTTTCTGGTCCTGCTTTCCGGCATACTTTTATATTTTTTATAAATATATTGATTTTTTATTTTTTAAAAGTTGTGACAATGCTCAACTGATCATGTTTGTTTACTAGGTCCAGAAACTGGTGGGTTCAAATCCTTTGGATCTTGCTAGGTCTAATTTGGCTAAGAGTGGCCAGATCAGCCGTAATGCTCTCTGTCCTTGCGGTTCCAAGAAGCGATATAAACGGTATTTAACTTCGAACCGTTGCTTAATTATTGAATTACAGTAGAACTTAAAATGTCTTTTCATTGAGCTTACCATCAATCCTCAATTCATAGCTTAAAACAAAGCAAAACCAGAAAGAAGATGATCATCCTTTGAGTAATAGGCTACTATGCAATATACCCCTGGAGTTGTTCTACTTTAGCTGAGTAAGTTAGGGTAGAACTTTGGTTCTTGGATGATGATGTAACTGTCCAGAAACTGATCACTGGAATGTTGATCATTTTTGTATTGCCCATCTTACTGATGGTTCCAAATCACTTTTATAAGCCCGTTGATCTTCTGCTTGGCCGCAAAGAACCCATCACCACGACAATGCCTGCTTGAAATGTAGCCCCATAGTCATTCAGTTTTATCCTTCCAACACGCCATGAACATCTGGCTCCTCTTTCCTTGTGCAAGTCTGATTTTAAAAATGTGTATATACTTCTGTTTAGCATGGATTTCTTATTACTGCAATTGTTTTTGTTTTTTTGAAGGTGCTGCGGGAAGGATCAAACGGCATAGGAAGAGAACTTGTTTGTCTGTTCCCTGTTTCTTGACTGAATATGTGGCAGTTCATAAGGATTATGTTAGATTGGACTTTCTATTTTATTTTACCTAGTTGGTTAAGCCATTTAGGGAGGGAATGAGATGCTGAGATCCTTCTTTCAGTTGGCATGGTTTTTAAATGCGCCAAATCCTCATGATCCTTCACGGGATCTTCAAAATGTAGCAAGGCCAAGATTTTGTCTTGAAATTTCACCTGAATGAGTTGGATTGAGCTAGGGGCTATTATTCATTAATTATGTATGATGTTTGAGTACCAATAAATATAGTCTTGAAAAATACATTTCCCGCTTTGGCTCATTTCCTTTATCATCGCCAGCTTTTCGGTTTTAGTATAACGATCGGTTATGTA

mRNA sequence

TAAAACCCTAATTCCAACCTGAAGAAGCCGATTCAGAACTCTTGCATTTTCCGAAAATGCGTTCGTCCTCTCGATTCCTAATCAATCTTTCCGAGACAAACACATCTAATCTCAATTTCCCCTTCTCTTCTTTTGATCGCAGTCCCCGAAATTGTGTTTCGGCTCTGTTACAATCACGGTCCATCTTCTCCACGACGCAGCTTTACGATTCATGGATGGATAAGATCAAGGGAGCCTTCACTGGAAAGAAGAGCCCTTCCGAAGGAACCGAAATCAGCTCTGAGTCCTTTACTCTCCTCCGGTTTGCTGAAGAATTGAAAAATGCCCGAAGAGTGGGGGCATTCAAGCAATATATAGTAGGAAGAAGTAGTGAAGCTACCTTTGCGGATGCTTTTGAGAAGCAGGAAGCAATTATTCGCTATTTGGGAGGATTTGATCCCACTGGGGAGAACATCCAAACCAGCCAAAAGCAAGAAGCAGCAAAAAAGTGTAATTGCACGATCGCCGATGTTGAGAATACACTGGCAAAGTTTATCTGGGCTAAAGAAGCACAAAAAAAGATTGAGAAGTTGAAGGAAGAAGGAAAACCAATGCCTAAGAGCTTAGCTGAGGTCCAGAAACTGGTGGGTTCAAATCCTTTGGATCTTGCTAGGTCTAATTTGGCTAAGAGTGGCCAGATCAGCCGTAATGCTCTCTGTCCTTGCGGTTCCAAGAAGCGATATAAACGGTGCTGCGGGAAGGATCAAACGGCATAGGAAGAGAACTTGTTTGTCTGTTCCCTGTTTCTTGACTGAATATGTGGCAGTTCATAAGGATTATGTTAGATTGGACTTTCTATTTTATTTTACCTAGTTGGTTAAGCCATTTAGGGAGGGAATGAGATGCTGAGATCCTTCTTTCAGTTGGCATGGTTTTTAAATGCGCCAAATCCTCATGATCCTTCACGGGATCTTCAAAATGTAGCAAGGCCAAGATTTTGTCTTGAAATTTCACCTGAATGAGTTGGATTGAGCTAGGGGCTATTATTCATTAATTATGTATGATGTTTGAGTACCAATAAATATAGTCTTGAAAAATACATTTCCCGCTTTGGCTCATTTCCTTTATCATCGCCAGCTTTTCGGTTTTAGTATAACGATCGGTTATGTA

Coding sequence (CDS)

ATGCGTTCGTCCTCTCGATTCCTAATCAATCTTTCCGAGACAAACACATCTAATCTCAATTTCCCCTTCTCTTCTTTTGATCGCAGTCCCCGAAATTGTGTTTCGGCTCTGTTACAATCACGGTCCATCTTCTCCACGACGCAGCTTTACGATTCATGGATGGATAAGATCAAGGGAGCCTTCACTGGAAAGAAGAGCCCTTCCGAAGGAACCGAAATCAGCTCTGAGTCCTTTACTCTCCTCCGGTTTGCTGAAGAATTGAAAAATGCCCGAAGAGTGGGGGCATTCAAGCAATATATAGTAGGAAGAAGTAGTGAAGCTACCTTTGCGGATGCTTTTGAGAAGCAGGAAGCAATTATTCGCTATTTGGGAGGATTTGATCCCACTGGGGAGAACATCCAAACCAGCCAAAAGCAAGAAGCAGCAAAAAAGTGTAATTGCACGATCGCCGATGTTGAGAATACACTGGCAAAGTTTATCTGGGCTAAAGAAGCACAAAAAAAGATTGAGAAGTTGAAGGAAGAAGGAAAACCAATGCCTAAGAGCTTAGCTGAGGTCCAGAAACTGGTGGGTTCAAATCCTTTGGATCTTGCTAGGTCTAATTTGGCTAAGAGTGGCCAGATCAGCCGTAATGCTCTCTGTCCTTGCGGTTCCAAGAAGCGATATAAACGGTGCTGCGGGAAGGATCAAACGGCATAG

Protein sequence

MRSSSRFLINLSETNTSNLNFPFSSFDRSPRNCVSALLQSRSIFSTTQLYDSWMDKIKGAFTGKKSPSEGTEISSESFTLLRFAEELKNARRVGAFKQYIVGRSSEATFADAFEKQEAIIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKPMPKSLAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKDQTA

Homology

[Close]

BLAST of CmaCh11G009910 vs. ExPASy Swiss-Prot
Match: A6TLE7 (Protein translocase subunit SecA 1 OS=Alkaliphilus metalliredigens (strain QYMF) OX=293826 GN=secA1 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 9.0e-05
Identity = 40/162 (24.69%), Postives = 72/162 (44.44%), Query Frame = 0


Query: 72  EISSESFTLLRFAEELKNARRVGAFKQYIVGRSSEATFADAFEKQEAI-----IRYLGGF 131
           +I   S  L    EE   A R+   ++ IV +  +  + D  +  + +     +R +G  
Sbjct: 745 QIYETSEKLYEAKEEEIEAERMRELERIIVLQVIDTKWMDHIDAMDQLRQGIGLRAIGQI 804

Query: 132 DPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKPMPKSLAEV 191
           DP       + + E     N  I  ++    K+++  E Q K+E+ K+  KP+  S  + 
Sbjct: 805 DPV-----RAYQVEGFDMFNAMINSIQEDTVKYLFNVEPQAKVER-KQVAKPIEASHGDG 864

Query: 192 QKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGK 229
            +          ++ + K  +  RN  CPCGS K+YK+CCG+
Sbjct: 865 NR---------KKAPVVKEKEAGRNDPCPCGSGKKYKKCCGE 891

[Close]

BLAST of CmaCh11G009910 vs. ExPASy Swiss-Prot
Match: A4J927 (Protein translocase subunit SecA OS=Desulfotomaculum reducens (strain MI-1) OX=349161 GN=secA PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 4.4e-04
Identity = 41/163 (25.15%), Postives = 74/163 (45.40%), Query Frame = 0


Query: 72  EISSESFTLLRFAEELKNARRVGAFKQYIVGRSSEATFADAFEKQEAI-----IRYLGGF 131
           E+   + +L +  EE   A  +   ++ ++ R  +  + D  +  + +     +R  G  
Sbjct: 727 ELLERTMSLYQKREEELGAETLREIERIVLLRLVDEKWMDHLDAMDQLREGIGLRAYGSK 786

Query: 132 DPTGENIQTSQKQEAAKKCNCTIADVENTLAKFIWAKEAQKKIEKLKEEGKPMPKSLAEV 191
           DP  E      K EA +  N  IA++++ + ++I+        E+ + +   +    AE 
Sbjct: 787 DPVIE-----YKFEAYEMFNNMIANIQDDVVRYIFRVNVAAPQERTQRQ--VVENRYAEE 846

Query: 192 QKLVGSNPLDLARSNLAKSGQISRNALCPCGSKKRYKRCCGKD 230
           +   G  P       + K  QI RN  CPCGS K+YK+CCGK+
Sbjct: 847 E---GKQP-------IRKENQIGRNDDCPCGSGKKYKKCCGKN 872

[Close]

BLAST of CmaCh11G009910 vs. TAIR 10
Match: AT3G04950.1 (CONTAINS InterPro DOMAIN/s: SEC-C motif (InterPro:IPR004027); Has 583 Blast hits to 583 proteins in 248 species: Archae - 0; Bacteria - 488; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink). )

HSP 1 Score: 283.1 bits (723), Expect = 2.0e-76
Identity = 141/192 (73.44%), Postives = 163/192 (84.90%), Query Frame = 0


Query: 39  QSRSIFSTTQLYDSWMDKIKGAFTGKK-SPSEGTEISSESFTLLRFAEELKNARRVGAFK 98
           Q RSI ST  L + WMD IKG FTG K +P E + +  E+FTLLRFA+ELKNARR+G FK
Sbjct: 41  QQRSITSTAPL-NGWMDSIKGVFTGNKDTPLEESNLPVEAFTLLRFADELKNARRLGKFK 100

Query: 99  QYIVGRSSEATFADAFEKQEAIIRYLGGFDPTGENIQTSQKQEAAKKCNCTIADVENTLA 158
           QYIVGRSSEATFADAFEKQEA+IRYLG  D TGEN+Q SQKQ+AAK C CTI DVENTL+
Sbjct: 101 QYIVGRSSEATFADAFEKQEAVIRYLGALDATGENLQASQKQDAAKHCKCTITDVENTLS 160

Query: 159 KFIWAKEAQKKIEKLKEEGKPMPKSLAEVQKLVGSNPLDLARSNLAKSGQISRNALCPCG 218
           KF WA++A KK+ +LKE GKP+PK++ E+QK++GS P+DLARSNLAKSGQISRNALCPCG
Sbjct: 161 KFTWARQAHKKMTELKEGGKPLPKNMGELQKMMGSTPMDLARSNLAKSGQISRNALCPCG 220

Query: 219 SKKRYKRCCGKD 230
           SKKRYKRCCGKD
Sbjct: 221 SKKRYKRCCGKD 231

The following BLAST results are available for this feature:

BLAST of CmaCh11G009910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A6TLE7	9.0e-05	24.69	Protein translocase subunit SecA 1 OS=Alkaliphilus metalliredigens (strain QYMF)...	[more]
A4J927	4.4e-04	25.15	Protein translocase subunit SecA OS=Desulfotomaculum reducens (strain MI-1) OX=3...	[more]

BLAST of CmaCh11G009910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04950.1	2.0e-76	73.44	CONTAINS InterPro DOMAIN/s: SEC-C motif (InterPro:IPR004027); Has 583 Blast hits...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004027	SEC-C motif	PFAM	PF02810	SEC-C	coord: 210..228 e-value: 1.1E-6 score: 28.4
None	No IPR available	GENE3D	3.10.450.50		coord: 97..229 e-value: 6.6E-7 score: 31.8
None	No IPR available	PANTHER	PTHR36750	SEC-C MOTIF PROTEIN	coord: 31..229
None	No IPR available	SUPERFAMILY	103642	Sec-C motif	coord: 208..228

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G009910.1	CmaCh11G009910.1	mRNA