CmaCh11G009460 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G009460
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like
Location	Cma_Chr11: 4973696 .. 4980311 (-)
RNA-Seq Expression	CmaCh11G009460
Synteny	CmaCh11G009460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAGAAAACAAGGGTAAACAATTGAAGGGAAACGAGGTCGTACAAGGGTAACGCCTCATCGGTTCTTCACATCAACGCCCAGGATACGACGGGGTATTGATTTTAAGTGGGTTTTTTTCAATCTACAAAGTTTCTGTACATTCCCATCTCGTTTCTTCATCTTTCCAAATCTTTTCTCGGCGAGTTCTGCTGCATTTCGTGTTTATTTCGATGCAGAATTTGGTAACCCAGGGGGGTTTTTGCTCATAATCCTATTTAGGTTTCTTTAAACTTGTGAATTTTCGATTGCGTTGATACTATAAAGTGCGTTGGAGGCTGATTTTGGACCGATTGTATCGTGGTTCAGCTTCAAAATCTCAAAATTCACTTACCCTTTTACGGGTTAATCTTAGGAACATGGTTTCTATATCGGGTTCGGTGTTCTTCCCATTAACAGTGCCCGATTGTTCATCTCGATCGCGTAAAGTAGCTGTTCTTGATAATCACAATTCGTTTTGTTTGAAGAAAAAGGATCAGAGAAGGATTGTTTGTAATTGCATTGCGCCTCCCCCTTTCTTCAAGAGTGATGGATCATCTACCGTAAATTTCAATGTACATCATTCACTTTTTTACTTATTTCTTTGTGTGTTCTCCGTGTTCCTTGAATTGGTAGCTTCGCTGTATTTGAATTGCTGTGATTGTGTTCGATTTTCATAATTTAGTTGAAATCTTTAATTGTTTAGTATATCTGTTCTGTCTTTGTGTTCATTGTAAACAATAGGTCTCCCCTTACTTTATGAACTCAAATTGATATATTTATGTTTTGTCTGATATGGTTCATATTTAACAATGGTTATATTATCAGGACTCGTTTACATCGGAACATTTAAGCCGAGATAATGAGGACGAGGACGAGGACGAGGACGAGTCTGATGTTCTCATTGAGTGTAGAAATGTCTACAAGTCCTTTGGAGAAAAGCATATATTGAGAGGTGTGAGCTTCAAGGTGATTCATAGTTCATTTCCTTTTTCACTTTTATGCAAATTCTCTCTTTTGATAATATATAGATGTAATTGATTTCTTTTTTGTCAAGAAAATAAGGAATTAGTTGTTTTTGAGTGTTCTATGTACACTTCCATTACAATTTACTGTGCTTTGGGGCTTATATGTCTACTTTTAATTCTTGTTTAATATTGTTTTGCTGAATCTTATTAGTTGTTTTTGAGTTACGCTGCTATGGAAATGAGAACGTGGTACTGTTTTTACCGGATTATCAAATAAATTGTTGTCATTGATAAAAGTTTTCTCCTGGTCCTTGCGGAAGAAAGAAAAAAGACTTTCACATTCTTCCTTTTGCTTTCGGGAAGGGAGGATTAAGAAAATCCTATTGATTGGAGGTTTCTCTAGACCTCCGAGAAAAGCATGAAATAAAAAGGCTTGAATGATCTGATCCATCCGTCACCCCAGAATGAAAGGGGCGATCTCGTAGTTCTTGGTCTGTGAAGATATATTGTTAGGTGCTCCGTTTTATTTTCTAATTGAGGCTGAACCTAAACCTGTGCTTGAGAGATAACTGTCCATATCCTGATAATGGATGTATGGATTCTCGAGAAGAGAGGAGCCGAGGTGGTCATTGAATGCAAAGAGAAAGAGGTGGAACGGTTGTGATTATTGTAGTTTCAAATGCATTTTTCAGCTATTATTGAACTTCTTTTGAGCCTTCATGGATTTTCCTCTTCCTCTTTGCTTCGGTCTCTTCGTATCTATTCATGTCAATGAACATAGCATCTTTCAACAATTTCCAATAATCAGCATCAACATGGAGTCTATGATTCTGGCTGTTGGGTATTGTCCGATTACATGGTTTTGGGAGGAAACAGGTTGTATAGCATTCCTTTTTTGTCATGCTTTTCCTCGCGTGACGGATAATTAAAAGTGCGATTAGAAGACATATACAATGCATAGGATGCTTTCCAAGATTGGTGATATCAAAGCTTTACTGATCTAGACTCAATAATGGGTTAATTTTTTGTCCGATCTCTATTGATTTTCTACTTCAAGGCTTTTCATCCTTTTTTGCATTCCAATGAAACGTGGTTCCTACTTTAAAAGAAAAAAAGCATCATCATCAGCTAACTTTGGACAGCTTAGCAACTTGAAAGAAGAAACAACCTTGGAAAGGCGATAAATCGTCATATTGTTAGTGGAGAAGTATGCATGTTGTATATATCGTATATCTTCTCGTTTATGTGAATTCCTTCCAAAGGCACGTCTCATGGAGGAAGAAGGAAGTTTTGGGTTTGATAATGGTATTTCCAGGGTTGGCACCCGTCTCTGTTGTTGTACTGTTTCATAGCTTGGTCTCATTTATTCTTCCTTCATTTGCAACATTACAGAAGAAGAACACTAATCACCCTGCATCGATATTCTCACAGCTCTTCACTCGGCTAACTCCGTTTTTTATATTTAGTAATTTTAATTATCTTTTAAAATATTTTACTTCCTCTCTTATTTTTATTTGTATAGATTAGACATGGAGAAGCTGTGGGAGTTATTGGGCCTTCTGGTACTGGGAAATCAACAATACTAAAGATCATTGCAGGTCTTCTTTCTCCAGACAAGGTAAAAAATCGTCTTTGATTTCACATTGTATTTTGCTGATGTTTTAGTTGTATGCATATTCCAGGTTTCCATATATATGATTACCCTTATTGGATTTCTGGTTTTGTGAACAGGGAGAGGTATATATTCGAGGTAGAAAGCGAGTTGGTTTGATTGATGATGAGGAGCTATCTGGTCTTCGAATTGGATTGGTTAGAATTTTCTTTTAAGTTGCATATAATTCTAGAAATTATTTGAAAAATGACTTTTTATAGAAGTATGAAATTGTGAGATCCCAGATCAATTGGAGAGGGAAACAAAACATTCTTTATAAGGGTGCGAGAATCTCTCTCAAGCAGACGCGTTTTAAAACCTTGAGGGAAAGTCCAAAGAGGGCAGTATCTGCTAGCAGAGGACTTGGGCTGTTACAAATGGTATTAGAGCCAGACACCAGGCGGTGTGCTAGCAAGGACTCTGGGTCCCCAAGGGGGTGGATTGTGAGATCCCACATCGATTGGAGAGGAGAACAAAGCATTCCTTACAAGGGTGCAGAAATTATTGATGTTAAGTAAATTTATTGTATCCCTATCAAGTTAAGTTCTTAAATTCCATTGTGATTTAACAATTCTAGATTTTAAATTCCTTGTTTTTCATGATTCTAGAAACTTGTTTCTGTATAACAAATCATATGAGCCATTGAGTTTCTTTTTAATCCTTAAACTGTTCATCCTTTCATTTCTCTCTGGCTGTAGGTTTTTCAGAGTGCAGCACTTTTTGACTCGTTAACCGTGCGGCAAAATGTTGGTTTCCTTTTGTAAGAGACTAATTTCTTAAAAAAAAATCTCGTTCACAATTTTCGTTATATTATACCATGAACTTAACCTGTATAAAGATTTCAGTATTATCTCATTTTTACTTTTGTTTACTGCTTAGGTATGAAAATTCAAGCTTGTCTGAAGATCAAATTTCAGCATTGGTAACTGAGAACTTGGCAGCTGTTGGGCTGAAGGTTTGCCTAGCATTTATTTATATGATAGCCATCTTCTCAAATCTCCAATTTGTCTCATTTTAGGCAGTGCTTCAAAATTTTCTGATATTTCGTATGTTAAACTTTTATTTTGTTAGGGAGTTGAGGATCGGTTACCTTCCGAATTATCAGGTGGAATGAAGAAACGAGTTGCTTTAGCTCGGTCTATAATTTTTGATAACACAAGGAAAGAAATTGAGCCAGAGGTATCTCCGTTATTTCTGTACGGTTAGATTATTATTAAAGGCTCCGTTTCATAACCATTTGGTTTTTTTGTTTTTGAAAATTACTATCGGAGAAGAAAAGCCAATAGAATGTTGGACAAAAGTCAATATGTCTGAATGTCCTTTCAAACTTATCTAAGCAAGCATTCTAGTTGTCACCATGTCGTTCTAGGTCGTCGTTACGTTTATTTTCTGTCCAACATTGTAACAATTTTTTACTCCAAGAGTAGTTTTGAAACCTTAATGAAAAATCTTGGGCAACTTTGCAACTTTTGAAAGCACTTCGCTTACGTTTTCAAAAATCATCACGAACTCGCAACTGCAATTAGTTACTGGGTATTAATTGGACCTTTTTTTTAATGAACTATTTGATCGACTAAAATAACTTTTTTCATGACACGAGTGATTATTTGCCATTGCTTACGAGCTGTATGGCTGCCTTGTTGACTGTTCGATTCACTTTAGATGACTACAGTAATGGCACCTTGTTTCATGGCCATTGACACCGACTGTGATTGCTCATGTAAACAGGTACTCTTGTATGATGAACCAACTGCTGGACTCGACCCAATTGCATCAACTGTTGTTGAAGATCTTATACGTTCTGTACATATTAAGGGTGAGGATGCTCGTGGGAAGCCTGGCAAAATTGCATCTTATATTGCAGTCACCCACCAACATAGTACCATTAGGAGAGCCGTTGACAGGTTACAATTTTAATTGCTGTTTTATGAGCTCTTGCTGCTTATAAGGTATAAATGATATTGCTAGCATGTCCCTGAAAGAACAAAATTTGATATTTTGTAGGTTGTTGTTTTTATATGAGGGAAAGGTTGTCTGGCAAGGAATGACCGATGAATTTACAACATCGACAAATCCAATCGTTCAACAGGTAAAGAAAATAAGCGTATTTTTAGACGTTTCGACGATGTTGATGTGATGTTTGTGGCAAGAATTGCTGTCATAATCCTTTTAACTTGGTCGTTGAGTGCCAAACTAATGAGTATAGCTTAAGGAGTTGTTTGAAATATAAGCTACATATTTTAGGGTAACCACTTGCTGTATTCTTTTAGCTGCCTAGGCATTTCAAGGTACATGAGGGTTAGATGAATGGGAATTAATACCTCGGACCGTATTCTGAGACCATCTCGTTAGGTCTTAGGCTTGCAGTGGTGCACTCTACGTGGAGGCACGATGAAGATATTGAACACTTGTCGTGGGGTGCCAGTTGGCTCATACTTTGTGGGGTAATTGCTTAAGTTCGTACGGGTAATGTTTGGCTCGAGGCAAGGGTTGCGATGCTACGTTCGATGAAGTGCTCCATAATCCCCTGTTTTAGGACGAGCATAGTTTTTTGGCAAGCTTGTTTCTTTGTTGTATTATTGGGAAATTGGCTGGCCAGAAATAGTAGAAATTGTAGGGAGGTTGAGAGATTGTAGGAGGGTATCTTAGAGGTTGTTAGGCTTAATGCGTCCTTAAGGCTTGGTTTATGTTAGGTAACCGAAACCACGAGCTAATTGAGAGAGCTAGAACCTCTCCTCCTAGACCAATCATGCACAAAATTTTACACACTAAGCTTTTACACACTAAGCTTGTGAGATCCCACATCTTTTAGAGAGGGGAACAAAACTTTCCTTATAAGAGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAACCATGAGATTGACGCCAATACGTAATGGGTTAAAGCGGACAATATCTGTTAGCGGTGAGATTGAGTAGTTACAAATGGTATCAGAGCTAGACACTGGGCAGTGTGCTAGCAAGGATGCAGGTCCCCCAAGGAGGGTGGATTGTGCGATCCCACATTGGTTGGAGAGGGGAATGAAGCATTCTTTATAAGGGTGTGAAAACCTCTCCCCAAAAGATGCATGTTAAAACCTTGACCTTGAGGGGAATTCTAGAAGAGATAGTCTAAAGAGGACAATATTTACTAGTGGTGGGCTTGAGTGGTTACAAATAGTATTAGAGACAAACATTGAGCAGAGTGCCAGTAATGTCGCTGAGCCCCCAAGGGGTTGGATTTTGAGATCCCACATTGGTTGGAGAGGGGAACGAAGCATTCCTTATAAGGGTGTGGAAACCTTTCCCTAGCAAACGCGTTTTATAACCCGGAGGGGAAGCCCAGAAGGGAAAGTCCAAAGAGGACAATATCTATTAGCGGGATAGGCTTGGGTTATTACAAAGCTAGATGCCCAAAACCCCTGCAAAACAGTTCGCACTTTATACAATTCTAACCATTTCTTACTAATTCCCCGATTTATCCTTCCTCAAATGTGTAATGTGTGTACACTATCTCTGATAGTTTGATTCTTTCGAATTAAAATCCTATTCTATAGCTAGTGGGTGGACTCCTTTTCTGTGTCCGCCTCATTCTTTGTTTTTTCTAATGGAAGATCGGTTTCTTAATAACATGAATTATATGGATGTATGTACTCACACTATTTGGTATACGAATGATTGAAATGCAAGAGAGGACAGTTTTCTTCTCTGGTATACTTTTGGGGAAATAAAAGTATTTGTCTAATATAATTCTTGTCATGTTTTTGTTCTTGTTTTCAGTTCGCATCGGGAAGCTTGGACGGTCCGATTAAGTATTAGCAGGCACGCTAACGATCATGTACTTTTAGATTAGACATAGCACCATTCCTATATCTTTGGAGGCAACAAAATTTAGTTCCTATATTCTACACATTTCTGTAATTCTGTTTCCTTTGTTTTAATAATATACTGGTTAGATATTATTCTCCGTGCA

mRNA sequence

ATGCCAAGAAAACAAGGGATACGACGGGGTATTGATTTTAAGTGGGTTTTTTTCAATCTACAAAGTTTCTGTACATTCCCATCTCGTTTCTTCATCTTTCCAAATCTTTTCTCGGCGAGTTCTGCTGCATTTCGTGTTTATTTCGATGCAGAATTTGTGCGTTGGAGGCTGATTTTGGACCGATTGTATCGTGGTTCAGCTTCAAAATCTCAAAATTCACTTACCCTTTTACGGGTTAATCTTAGGAACATGGTTTCTATATCGGGTTCGGTGTTCTTCCCATTAACAGTGCCCGATTGTTCATCTCGATCGCGTAAAGTAGCTGTTCTTGATAATCACAATTCGTTTTGTTTGAAGAAAAAGGATCAGAGAAGGATTGTTTGTAATTGCATTGCGCCTCCCCCTTTCTTCAAGAGTGATGGATCATCTACCGTAAATTTCAATGACTCGTTTACATCGGAACATTTAAGCCGAGATAATGAGGACGAGGACGAGGACGAGGACGAGTCTGATGTTCTCATTGAGTGTAGAAATGTCTACAAGTCCTTTGGAGAAAAGCATATATTGAGAGGTGTGAGCTTCAAGATTAGACATGGAGAAGCTGTGGGAGTTATTGGGCCTTCTGGTACTGGGAAATCAACAATACTAAAGATCATTGCAGGTCTTCTTTCTCCAGACAAGGGAGAGGTATATATTCGAGGTAGAAAGCGAGTTGGTTTGATTGATGATGAGGAGCTATCTGGTCTTCGAATTGGATTGGTTTTTCAGAGTGCAGCACTTTTTGACTCGTTAACCGTGCGGCAAAATGTTGGTTTCCTTTTGTATGAAAATTCAAGCTTGTCTGAAGATCAAATTTCAGCATTGGTAACTGAGAACTTGGCAGCTGTTGGGCTGAAGGGAGTTGAGGATCGGTTACCTTCCGAATTATCAGGTGGAATGAAGAAACGAGTTGCTTTAGCTCGGTCTATAATTTTTGATAACACAAGGAAAGAAATTGAGCCAGAGGTACTCTTGTATGATGAACCAACTGCTGGACTCGACCCAATTGCATCAACTGTTGTTGAAGATCTTATACGTTCTGTACATATTAAGGGTGAGGATGCTCGTGGGAAGCCTGGCAAAATTGCATCTTATATTGCAGTCACCCACCAACATAGTACCATTAGGAGAGCCGTTGACAGGTTGTTGTTTTTATATGAGGGAAAGGTTGTCTGGCAAGGAATGACCGATGAATTTACAACATCGACAAATCCAATCGTTCAACAGTTCGCATCGGGAAGCTTGGACGGTCCGATTAAGTATTAGCAGGCACGCTAACGATCATGTACTTTTAGATTAGACATAGCACCATTCCTATATCTTTGGAGGCAACAAAATTTAGTTCCTATATTCTACACATTTCTGTAATTCTGTTTCCTTTGTTTTAATAATATACTGGTTAGATATTATTCTCCGTGCA

Coding sequence (CDS)

ATGCCAAGAAAACAAGGGATACGACGGGGTATTGATTTTAAGTGGGTTTTTTTCAATCTACAAAGTTTCTGTACATTCCCATCTCGTTTCTTCATCTTTCCAAATCTTTTCTCGGCGAGTTCTGCTGCATTTCGTGTTTATTTCGATGCAGAATTTGTGCGTTGGAGGCTGATTTTGGACCGATTGTATCGTGGTTCAGCTTCAAAATCTCAAAATTCACTTACCCTTTTACGGGTTAATCTTAGGAACATGGTTTCTATATCGGGTTCGGTGTTCTTCCCATTAACAGTGCCCGATTGTTCATCTCGATCGCGTAAAGTAGCTGTTCTTGATAATCACAATTCGTTTTGTTTGAAGAAAAAGGATCAGAGAAGGATTGTTTGTAATTGCATTGCGCCTCCCCCTTTCTTCAAGAGTGATGGATCATCTACCGTAAATTTCAATGACTCGTTTACATCGGAACATTTAAGCCGAGATAATGAGGACGAGGACGAGGACGAGGACGAGTCTGATGTTCTCATTGAGTGTAGAAATGTCTACAAGTCCTTTGGAGAAAAGCATATATTGAGAGGTGTGAGCTTCAAGATTAGACATGGAGAAGCTGTGGGAGTTATTGGGCCTTCTGGTACTGGGAAATCAACAATACTAAAGATCATTGCAGGTCTTCTTTCTCCAGACAAGGGAGAGGTATATATTCGAGGTAGAAAGCGAGTTGGTTTGATTGATGATGAGGAGCTATCTGGTCTTCGAATTGGATTGGTTTTTCAGAGTGCAGCACTTTTTGACTCGTTAACCGTGCGGCAAAATGTTGGTTTCCTTTTGTATGAAAATTCAAGCTTGTCTGAAGATCAAATTTCAGCATTGGTAACTGAGAACTTGGCAGCTGTTGGGCTGAAGGGAGTTGAGGATCGGTTACCTTCCGAATTATCAGGTGGAATGAAGAAACGAGTTGCTTTAGCTCGGTCTATAATTTTTGATAACACAAGGAAAGAAATTGAGCCAGAGGTACTCTTGTATGATGAACCAACTGCTGGACTCGACCCAATTGCATCAACTGTTGTTGAAGATCTTATACGTTCTGTACATATTAAGGGTGAGGATGCTCGTGGGAAGCCTGGCAAAATTGCATCTTATATTGCAGTCACCCACCAACATAGTACCATTAGGAGAGCCGTTGACAGGTTGTTGTTTTTATATGAGGGAAAGGTTGTCTGGCAAGGAATGACCGATGAATTTACAACATCGACAAATCCAATCGTTCAACAGTTCGCATCGGGAAGCTTGGACGGTCCGATTAAGTATTAG

Protein sequence

MPRKQGIRRGIDFKWVFFNLQSFCTFPSRFFIFPNLFSASSAAFRVYFDAEFVRWRLILDRLYRGSASKSQNSLTLLRVNLRNMVSISGSVFFPLTVPDCSSRSRKVAVLDNHNSFCLKKKDQRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDNEDEDEDEDESDVLIECRNVYKSFGEKHILRGVSFKIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRIGLVFQSAALFDSLTVRQNVGFLLYENSSLSEDQISALVTENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTRKEIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGEDARGKPGKIASYIAVTHQHSTIRRAVDRLLFLYEGKVVWQGMTDEFTTSTNPIVQQFASGSLDGPIKY

Homology

[Close]

BLAST of CmaCh11G009460 vs. ExPASy Swiss-Prot
Match: Q9AT00 (Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TGD3 PE=1 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 5.2e-131
Identity = 244/312 (78.21%), Postives = 272/312 (87.18%), Query Frame = 0


Query: 123 QRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDNEDEDEDEDESDVLIECRNVYKS 182
           +R++ C CIAPP    +D +      DS T          E   E++SDVLIECR+VYKS
Sbjct: 40  RRKVSCCCIAPPQNLDNDATKF----DSLTKS--GGGMCKERGLENDSDVLIECRDVYKS 99

Query: 183 FGEKHILRGVSFKIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLID 242
           FGEKHIL+GVSFKIRHGEAVGVIGPSGTGKSTILKI+AGLL+PDKGEVYIRG+KR GLI 
Sbjct: 100 FGEKHILKGVSFKIRHGEAVGVIGPSGTGKSTILKIMAGLLAPDKGEVYIRGKKRAGLIS 159

Query: 243 DEELSGLRIGLVFQSAALFDSLTVRQNVGFLLYENSSLSEDQISALVTENLAAVGLKGVE 302
           DEE+SGLRIGLVFQSAALFDSL+VR+NVGFLLYE S +SE+QIS LVT+ LAAVGLKGVE
Sbjct: 160 DEEISGLRIGLVFQSAALFDSLSVRENVGFLLYERSKMSENQISELVTQTLAAVGLKGVE 219

Query: 303 DRLPSELSGGMKKRVALARSIIFDNTRKEIEPEVLLYDEPTAGLDPIASTVVEDLIRSVH 362
           +RLPSELSGGMKKRVALARS+IFD T++ IEPEVLLYDEPTAGLDPIASTVVEDLIRSVH
Sbjct: 220 NRLPSELSGGMKKRVALARSLIFDTTKEVIEPEVLLYDEPTAGLDPIASTVVEDLIRSVH 279

Query: 363 IKGEDARGKPGKIASYIAVTHQHSTIRRAVDRLLFLYEGKVVWQGMTDEFTTSTNPIVQQ 422
           +  EDA GKPGKIASY+ VTHQHSTI+RAVDRLLFLYEGK+VWQGMT EFTTSTNPIVQQ
Sbjct: 280 MTDEDAVGKPGKIASYLVVTHQHSTIQRAVDRLLFLYEGKIVWQGMTHEFTTSTNPIVQQ 339

Query: 423 FASGSLDGPIKY 435
           FA+GSLDGPI+Y
Sbjct: 340 FATGSLDGPIRY 345

[Close]

BLAST of CmaCh11G009460 vs. ExPASy Swiss-Prot
Match: P63358 (Probable ribonucleotide transport ATP-binding protein mkl OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=mkl PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.0e-38
Identity = 96/263 (36.50%), Postives = 142/263 (53.99%), Query Frame = 0


Query: 172 VLIECRNVYKSFGEKHILRGVSFKIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVY 231
           V IE   + KSFG   I   V+  I  GE   ++GPSGTGKS  LK + GLL P++G + 
Sbjct: 26  VSIEVNGLTKSFGSSRIWEDVTLTIPAGEVSVLLGPSGTGKSVFLKSLIGLLRPERGSII 85

Query: 232 IRGRKRVGLIDDEELSGLR--IGLVFQSAALFDSLTVRQNVGFLLYENSSLSEDQISALV 291
           I G   +     +EL  +R   G++FQ  ALF S+ +  N  F L E++   E +I  +V
Sbjct: 86  IDGTDIIE-CSAKELYEIRTLFGVLFQDGALFGSMNLYDNTAFPLREHTKKKESEIRDIV 145

Query: 292 TENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTRKEIEPEVLLYDEPTAGLDPI 351
            E LA VGL G E + P E+SGGM+KR  LAR+++ D       P+++L DEP +GLDP+
Sbjct: 146 MEKLALVGLGGDEKKFPGEISGGMRKRAGLARALVLD-------PQIILCDEPDSGLDPV 205

Query: 352 ASTVVEDLIRSVHIKGEDARGKPGKIASYIAVTHQHSTIRRAVDRLLFLYEGKVVWQGMT 411
            +  +  LI  ++ + +         A+ + VTH  +  R   D +  L+   +V  G  
Sbjct: 206 RTAYLSQLIMDINAQID---------ATILIVTHNINIARTVPDNMGMLFRKHLVMFGPR 265

Query: 412 DEFTTSTNPIVQQFASGSLDGPI 433
           +   TS  P+V+QF +G   GPI
Sbjct: 266 EVLLTSDEPVVRQFLNGRRIGPI 271

[Close]

BLAST of CmaCh11G009460 vs. ExPASy Swiss-Prot
Match: P9WQL4 (Probable ribonucleotide transport ATP-binding protein mkl OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=mkl PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.0e-38
Identity = 96/263 (36.50%), Postives = 142/263 (53.99%), Query Frame = 0


Query: 172 VLIECRNVYKSFGEKHILRGVSFKIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVY 231
           V IE   + KSFG   I   V+  I  GE   ++GPSGTGKS  LK + GLL P++G + 
Sbjct: 26  VSIEVNGLTKSFGSSRIWEDVTLTIPAGEVSVLLGPSGTGKSVFLKSLIGLLRPERGSII 85

Query: 232 IRGRKRVGLIDDEELSGLR--IGLVFQSAALFDSLTVRQNVGFLLYENSSLSEDQISALV 291
           I G   +     +EL  +R   G++FQ  ALF S+ +  N  F L E++   E +I  +V
Sbjct: 86  IDGTDIIE-CSAKELYEIRTLFGVLFQDGALFGSMNLYDNTAFPLREHTKKKESEIRDIV 145

Query: 292 TENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTRKEIEPEVLLYDEPTAGLDPI 351
            E LA VGL G E + P E+SGGM+KR  LAR+++ D       P+++L DEP +GLDP+
Sbjct: 146 MEKLALVGLGGDEKKFPGEISGGMRKRAGLARALVLD-------PQIILCDEPDSGLDPV 205

Query: 352 ASTVVEDLIRSVHIKGEDARGKPGKIASYIAVTHQHSTIRRAVDRLLFLYEGKVVWQGMT 411
            +  +  LI  ++ + +         A+ + VTH  +  R   D +  L+   +V  G  
Sbjct: 206 RTAYLSQLIMDINAQID---------ATILIVTHNINIARTVPDNMGMLFRKHLVMFGPR 265

Query: 412 DEFTTSTNPIVQQFASGSLDGPI 433
           +   TS  P+V+QF +G   GPI
Sbjct: 266 EVLLTSDEPVVRQFLNGRRIGPI 271

[Close]

BLAST of CmaCh11G009460 vs. ExPASy Swiss-Prot
Match: P9WQL5 (Probable ribonucleotide transport ATP-binding protein mkl OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=mkl PE=1 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.0e-38
Identity = 96/263 (36.50%), Postives = 142/263 (53.99%), Query Frame = 0


Query: 172 VLIECRNVYKSFGEKHILRGVSFKIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVY 231
           V IE   + KSFG   I   V+  I  GE   ++GPSGTGKS  LK + GLL P++G + 
Sbjct: 26  VSIEVNGLTKSFGSSRIWEDVTLTIPAGEVSVLLGPSGTGKSVFLKSLIGLLRPERGSII 85

Query: 232 IRGRKRVGLIDDEELSGLR--IGLVFQSAALFDSLTVRQNVGFLLYENSSLSEDQISALV 291
           I G   +     +EL  +R   G++FQ  ALF S+ +  N  F L E++   E +I  +V
Sbjct: 86  IDGTDIIE-CSAKELYEIRTLFGVLFQDGALFGSMNLYDNTAFPLREHTKKKESEIRDIV 145

Query: 292 TENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTRKEIEPEVLLYDEPTAGLDPI 351
            E LA VGL G E + P E+SGGM+KR  LAR+++ D       P+++L DEP +GLDP+
Sbjct: 146 MEKLALVGLGGDEKKFPGEISGGMRKRAGLARALVLD-------PQIILCDEPDSGLDPV 205

Query: 352 ASTVVEDLIRSVHIKGEDARGKPGKIASYIAVTHQHSTIRRAVDRLLFLYEGKVVWQGMT 411
            +  +  LI  ++ + +         A+ + VTH  +  R   D +  L+   +V  G  
Sbjct: 206 RTAYLSQLIMDINAQID---------ATILIVTHNINIARTVPDNMGMLFRKHLVMFGPR 265

Query: 412 DEFTTSTNPIVQQFASGSLDGPI 433
           +   TS  P+V+QF +G   GPI
Sbjct: 266 EVLLTSDEPVVRQFLNGRRIGPI 271

[Close]

BLAST of CmaCh11G009460 vs. ExPASy Swiss-Prot
Match: P30769 (Probable ribonucleotide transport ATP-binding protein mkl OS=Mycobacterium leprae (strain TN) OX=272631 GN=mkl PE=3 SV=2)

HSP 1 Score: 161.8 bits (408), Expect = 1.8e-38
Identity = 95/263 (36.12%), Postives = 142/263 (53.99%), Query Frame = 0


Query: 172 VLIECRNVYKSFGEKHILRGVSFKIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVY 231
           V IE + + KSFG   I   V+  I  GE   ++GPSGTGKS  LK + GLL P++G + 
Sbjct: 14  VAIEVKGLTKSFGSSRIWEDVTLDIPAGEVSVLLGPSGTGKSVFLKSLIGLLRPERGSIL 73

Query: 232 IRGRKRVGLIDDEELSGLR--IGLVFQSAALFDSLTVRQNVGFLLYENSSLSEDQISALV 291
           I G   +     +EL  +R   G++FQ  ALF S+ +  N  F L E++   E +I  +V
Sbjct: 74  IDGTDIIE-CSAKELYEIRTLFGVLFQDGALFGSMNLYDNTAFPLREHTKKKESEIRDIV 133

Query: 292 TENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTRKEIEPEVLLYDEPTAGLDPI 351
            E L  VGL G E + P E+SGGM+KR  LAR+++ D       P+++L DEP +GLDP+
Sbjct: 134 MEKLQLVGLGGDEKKFPGEISGGMRKRAGLARALVLD-------PQIILCDEPDSGLDPV 193

Query: 352 ASTVVEDLIRSVHIKGEDARGKPGKIASYIAVTHQHSTIRRAVDRLLFLYEGKVVWQGMT 411
            +  +  LI  ++ + +         A+ + VTH  +  R   D +  L+   +V  G  
Sbjct: 194 RTAYLSQLIMDINAQID---------ATILIVTHNVNIARTVPDNMGMLFRKHLVMFGPR 253

Query: 412 DEFTTSTNPIVQQFASGSLDGPI 433
           +   TS  P+V+QF +G   GPI
Sbjct: 254 EVLLTSDEPVVRQFLNGRRIGPI 259

[Close]

BLAST of CmaCh11G009460 vs. TAIR 10
Match: AT1G65410.1 (non-intrinsic ABC protein 11 )

HSP 1 Score: 469.2 bits (1206), Expect = 3.7e-132
Identity = 244/312 (78.21%), Postives = 272/312 (87.18%), Query Frame = 0


Query: 123 QRRIVCNCIAPPPFFKSDGSSTVNFNDSFTSEHLSRDNEDEDEDEDESDVLIECRNVYKS 182
           +R++ C CIAPP    +D +      DS T          E   E++SDVLIECR+VYKS
Sbjct: 40  RRKVSCCCIAPPQNLDNDATKF----DSLTKS--GGGMCKERGLENDSDVLIECRDVYKS 99

Query: 183 FGEKHILRGVSFKIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLID 242
           FGEKHIL+GVSFKIRHGEAVGVIGPSGTGKSTILKI+AGLL+PDKGEVYIRG+KR GLI 
Sbjct: 100 FGEKHILKGVSFKIRHGEAVGVIGPSGTGKSTILKIMAGLLAPDKGEVYIRGKKRAGLIS 159

Query: 243 DEELSGLRIGLVFQSAALFDSLTVRQNVGFLLYENSSLSEDQISALVTENLAAVGLKGVE 302
           DEE+SGLRIGLVFQSAALFDSL+VR+NVGFLLYE S +SE+QIS LVT+ LAAVGLKGVE
Sbjct: 160 DEEISGLRIGLVFQSAALFDSLSVRENVGFLLYERSKMSENQISELVTQTLAAVGLKGVE 219

Query: 303 DRLPSELSGGMKKRVALARSIIFDNTRKEIEPEVLLYDEPTAGLDPIASTVVEDLIRSVH 362
           +RLPSELSGGMKKRVALARS+IFD T++ IEPEVLLYDEPTAGLDPIASTVVEDLIRSVH
Sbjct: 220 NRLPSELSGGMKKRVALARSLIFDTTKEVIEPEVLLYDEPTAGLDPIASTVVEDLIRSVH 279

Query: 363 IKGEDARGKPGKIASYIAVTHQHSTIRRAVDRLLFLYEGKVVWQGMTDEFTTSTNPIVQQ 422
           +  EDA GKPGKIASY+ VTHQHSTI+RAVDRLLFLYEGK+VWQGMT EFTTSTNPIVQQ
Sbjct: 280 MTDEDAVGKPGKIASYLVVTHQHSTIQRAVDRLLFLYEGKIVWQGMTHEFTTSTNPIVQQ 339

Query: 423 FASGSLDGPIKY 435
           FA+GSLDGPI+Y
Sbjct: 340 FATGSLDGPIRY 345

[Close]

BLAST of CmaCh11G009460 vs. TAIR 10
Match: AT1G67940.1 (non-intrinsic ABC protein 3 )

HSP 1 Score: 106.3 bits (264), Expect = 6.3e-23
Identity = 80/237 (33.76%), Postives = 128/237 (54.01%), Query Frame = 0


Query: 188 ILRGVSFKIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELS 247
           IL+GV+  I  G  VGVIGPSG+GKST L+ +  L  P +  V++ G     +  D    
Sbjct: 44  ILKGVTIDIPKGMIVGVIGPSGSGKSTFLRSLNRLWEPPESTVFLDGEDITNV--DVIAL 103

Query: 248 GLRIGLVFQSAALFDSLTVRQNVGF-LLYENSSLSEDQISALVTENLAAVGLKGVEDRLP 307
             R+G++FQ   LF   TV  NV +        LS++++  L+  +LA +     + +  
Sbjct: 104 RRRVGMLFQLPVLFQG-TVADNVRYGPNLRGEKLSDEEVYKLL--SLADLDASFAK-KTG 163

Query: 308 SELSGGMKKRVALARSIIFDNTRKEIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGE 367
           +ELS G  +RVALAR++         EPEVLL DEPT+ LDPI++  +ED+I    +K +
Sbjct: 164 AELSVGQAQRVALARTL-------ANEPEVLLLDEPTSALDPISTENIEDVI----VKLK 223

Query: 368 DARGKPGKIASYIAVTHQHSTIRRAVDRLLFLYEGKVVWQGMTDEFTTSTNPIVQQF 424
             RG      + + V+H    I++  D +  + +G++V      E + +T+P+ Q+F
Sbjct: 224 KQRG-----ITTVIVSHSIKQIQKVADIVCLVVDGEIVEVLKPSELSHATHPMAQRF 258

[Close]

BLAST of CmaCh11G009460 vs. TAIR 10
Match: AT3G62150.1 (P-glycoprotein 21 )

HSP 1 Score: 99.8 bits (247), Expect = 5.9e-21
Identity = 76/248 (30.65%), Postives = 127/248 (51.21%), Query Frame = 0


Query: 174 IECRNV---YKSFGEKHILRGVSFKIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEV 233
           IE  NV   Y +  E+ I RG S  I  G  V ++G SG+GKST++ +I     P  GEV
Sbjct: 403 IELNNVNFSYPARPEEQIFRGFSLSISSGSTVALVGQSGSGKSTVVSLIERFYDPQSGEV 462

Query: 234 YIRGRKRVGLIDDEELSGLR--IGLVFQSAALFDSLTVRQNVGFLLYENSSLSE-----D 293
            I G      + + +L  +R  IGLV Q   LF S ++++N+ +   EN+++ E     +
Sbjct: 463 RIDGIN----LKEFQLKWIRSKIGLVSQEPVLFTS-SIKENIAY-GKENATVEEIRKATE 522

Query: 294 QISALVTENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTRKEIEPEVLLYDEPT 353
             +A    +    GL  +     ++LSGG K+R+A+AR+I+ D       P +LL DE T
Sbjct: 523 LANASKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAVARAILKD-------PRILLLDEAT 582

Query: 354 AGLDPIASTVVEDLIRSVHIKGEDARGKPGKIASYIAVTHQHSTIRRAVDRLLFLYEGKV 412
           + LD  +  +V++ +  + +             + + V H+ ST+R A D +  +++GK+
Sbjct: 583 SALDAESERIVQEALDRIMVN-----------RTTVVVAHRLSTVRNA-DMIAVIHQGKI 625

[Close]

BLAST of CmaCh11G009460 vs. TAIR 10
Match: AT5G46540.1 (P-glycoprotein 7 )

HSP 1 Score: 95.5 bits (236), Expect = 1.1e-19
Identity = 77/252 (30.56%), Postives = 129/252 (51.19%), Query Frame = 0


Query: 174 IECRNVYKSFGEK---HILRGVSFKIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEV 233
           IE R+VY  +  +    I  G S  + +G  V ++G SG+GKST++ +I     P+ GEV
Sbjct: 357 IELRDVYFRYPARPDVQIFVGFSLTVPNGMTVALVGQSGSGKSTVISLIERFYDPESGEV 416

Query: 234 YIRGRKRVGLIDDEELS----GLRIGLVFQSAALFDSLTVRQNVGFLLYENSSLSEDQI- 293
            I G      ID ++        +IGLV Q   LF + T+R+N+   +Y     S+ +I 
Sbjct: 417 LIDG------IDLKKFQVKWIRSKIGLVSQEPILF-ATTIRENI---VYGKKDASDQEIR 476

Query: 294 SALVTENLA------AVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTRKEIEPEVLLY 353
           +AL   N +        GL+ +     ++LSGG K+R+A+AR+I+ +       P++LL 
Sbjct: 477 TALKLANASNFIDKLPQGLETMVGEHGTQLSGGQKQRIAIARAILKN-------PKILLL 536

Query: 354 DEPTAGLDPIASTVVEDLIRSVHIKGEDARGKPGKIASYIAVTHQHSTIRRAVDRLLFLY 412
           DE T+ LD  +  +V+D +  + +             + + V H+ +TIR A D +  + 
Sbjct: 537 DEATSALDAESERIVQDALVKLMLS-----------RTTVVVAHRLTTIRTA-DMIAVVQ 579

[Close]

BLAST of CmaCh11G009460 vs. TAIR 10
Match: AT3G47790.1 (ABC2 homolog 7 )

HSP 1 Score: 94.0 bits (232), Expect = 3.2e-19
Identity = 65/242 (26.86%), Postives = 121/242 (50.00%), Query Frame = 0


Query: 171 DVLIECRNVYKSFG------EKHILRGVSFKIRHGEAVGVIGPSGTGKSTILKIIAGLLS 230
           D  + C N+ K +       +K  +RG+S  +  GE  G++GP+G GK++ + ++ G++ 
Sbjct: 583 DSAVLCNNLKKVYSGKDGNPQKLAVRGLSLALPQGECFGMLGPNGAGKTSFINMMTGIIK 642

Query: 231 PDKGEVYIRGRKRVGLIDDEELSGLRIGLVFQSAALFDSLTVRQNVGFLLYEN-SSLSED 290
           P  G  +++G   + ++ D +     IG+  Q   L++ L+ R+++  L Y    +L   
Sbjct: 643 PSSGTAFVQG---LDILTDMDRIYTTIGVCPQHDLLWEKLSGREHL--LFYGRLKNLKGS 702

Query: 291 QISALVTENLAAVGL--KGVEDRLPSELSGGMKKRVALARSIIFDNTRKEIEPEVLLYDE 350
            ++  V E+L +V L   G+ D+  S+ SGGMK+R+++A S+I         P+V+  DE
Sbjct: 703 VLTQAVEESLRSVNLFHGGIGDKQVSKYSGGMKRRLSVAISLIG-------SPKVVYMDE 762

Query: 351 PTAGLDPIASTVVEDLIRSVHIKGEDARGKPGKIASYIAVTHQHSTIRRAVDRLLFLYEG 404
           P+ GLDP +   + D+++    KG           + I  TH         DR+    +G
Sbjct: 763 PSTGLDPASRKSLWDVVKRAKRKG-----------AIILTTHSMEEAEILCDRIGIFVDG 801

The following BLAST results are available for this feature:

BLAST of CmaCh11G009460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AT00	5.2e-131	78.21	Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic OS=Arabidopsis thaliana OX=...	[more]
P63358	1.0e-38	36.50	Probable ribonucleotide transport ATP-binding protein mkl OS=Mycobacterium bovis...	[more]
P9WQL4	1.0e-38	36.50	Probable ribonucleotide transport ATP-binding protein mkl OS=Mycobacterium tuber...	[more]
P9WQL5	1.0e-38	36.50	Probable ribonucleotide transport ATP-binding protein mkl OS=Mycobacterium tuber...	[more]
P30769	1.8e-38	36.12	Probable ribonucleotide transport ATP-binding protein mkl OS=Mycobacterium lepra...	[more]

BLAST of CmaCh11G009460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G65410.1	3.7e-132	78.21	non-intrinsic ABC protein 11	[more]
AT1G67940.1	6.3e-23	33.76	non-intrinsic ABC protein 3	[more]
AT3G62150.1	5.9e-21	30.65	P-glycoprotein 21	[more]
AT5G46540.1	1.1e-19	30.56	P-glycoprotein 7	[more]
AT3G47790.1	3.2e-19	26.86	ABC2 homolog 7	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 198..402 e-value: 1.5E-13 score: 61.0
IPR003439	ABC transporter-like, ATP-binding domain	PFAM	PF00005	ABC_tran	coord: 189..344 e-value: 1.9E-29 score: 102.9
IPR003439	ABC transporter-like, ATP-binding domain	PROSITE	PS50893	ABC_TRANSPORTER_2	coord: 174..425 score: 23.676239
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 159..426 e-value: 5.8E-63 score: 214.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 172..415
None	No IPR available	PANTHER	PTHR43023	PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC	coord: 88..434
None	No IPR available	PANTHER	PTHR43023:SF3	PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC	coord: 88..434
None	No IPR available	CDD	cd03261	ABC_Org_Solvent_Resistant	coord: 174..423 e-value: 2.67083E-121 score: 350.649
IPR017871	ABC transporter-like, conserved site	PROSITE	PS00211	ABC_TRANSPORTER_1	coord: 309..323

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G009460.1	CmaCh11G009460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding