CmaCh11G009430 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G009430
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ubiquitin carboxyl-terminal hydrolase 15
Location	Cma_Chr11: 4959745 .. 4962870 (+)
RNA-Seq Expression	CmaCh11G009430
Synteny	CmaCh11G009430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAGCACTGAAAATTATTTCCCATTTTTTTAACGTTAAATCAAAAGACATTCCGCCAATTCCATCAATTCCTACAATGGGCTTCGTGTTTCACACACTATCACCACCAAAATCTCTCCTCTAAACCCTTCATTTCCAAAACCTCTATATGAAAAGATCTCTAACAATCACTTCCAGGTTCATCTTCCCAATTCAACCCCATCTCTCAATACCCATTTCATGTTCTAAATCGATCTCAAACCAAAACCCCATTTCCGCACAGTTCAACAGTTCCAATTCCTTCCGAGTTGCATGATGTCTAGCCATGGCGCTGGATTCTCCCTCGTTTTTTTGCTGTTTCTCGCCGTTTTAGCGGCTGAGCATGAACTAAATTTCAATCAAGTGAGTTCCCTTTTGACCATTTCCTTTAATTCATCGATCCCATTTTCATTTTCTGAGTTCAATTTGATGAACGTTTTTTATTTTGTTGTTCATCAGCCAAATGGGTCTGTATCAGAGATGGTGCCACTGATTGAGGAGGGGAAAATTAATATCATGGAGATGAATGAAACTAGAAGAATACTCGGAAGCTTTCAAGTATGTGCTCCTTGTACTTGCTGTGGAGGTGCTAAGGGCCTCTGTTTACCTTCTCCTTGTTGCTATGCAATCAATTGCAATATCCCCAACAGGCCATTTGGGTTCTGTTCTTTCACTCCCAAATCCTGTAATTGCTTTGGGTGCAATATCTAGCCTATATATTATGCATGAATATGATGTTATTCCTTAGATTTTAGGGTCATTTATCATCTGTGTTGCTCTGTTCTTGAAAGGAAAGGATTGATTTGAAGGAATCTCTCCGGAAATTTTTCTTGTTTATAGTTTTAATGGAATTATGTCTCCCAAATCCTCTTAGTTCCAGGTTTTATCTTAGAAAGTGGCCGTTCCTGAAGATAGGATTGTGAGGTTGATTACCATTTTTTTCTTCTCTTTTTGCTGTTCTTTAGGAAATATGCTTTCATTTGATAATGGAGCTGTTGCTGCCGTTTGTTGAGTATGTTTAGATGGTAAATGATATGGGAAAGCCTTGGAATTGTAAGATGATGTATAGAGTTTCATGAAGTGAGTTATGTTTGTTCTTATTGTAAAAATTGTTGGCTTATTCAAGTATTCATGTTACTTTTCATTGTATATTTGTTTGATGGTTGATTCATCCCTCTTTGTGTGTTGCTTACTTGATTAACTTAGAGTGTTCCCGATCACATTGCCCTTGAAGTTTTCTTGCTTTCATTAATATTGTCCTCTTTGGGATTCCCTTTAAGGTTTTAAAACGCGTCTACTAGGGAAAGGTTTCCACACCCATATAAAGAATGCTTCGTTCCCCTCTCCAATCGACATGGGATCTCACATTCCACCCCCTTTCGAGGCTCAGTGTCCTCGCTGGTACTCGTTCCGCTCTCCAATCGATGTGGGATCTCAGAACCCATTTCCTTCGAGGCCCAGCGTCCTCACTGGCACTCTTTTCCCTCTCCAATCGATGTGGGATCTCAGAACCCACCCCCTTCGAGGCCCAGCGTCCTCGTTGGCATTCGTTTCCCTCTCCAATCGATGTGGGGTCGCACAATCCACTCTTTACGGGGCCCAGCGTCCTAATAAAGAACAAAGAAACACTAGTAGTCAAGGTTTGATAAGACAACCAATTAACTCCTCTCCTTTTCTTCAACAATGGAATAAGAATAGGCTTCTTTTGTTTTGTGTATATCCAAATCTTTTATTTGGTGAGGGCCGAGTTAAGGGGATGGAAGAGTTAGAGTGGTATAACTTCATTAAGATGTGTGGAACTATTCTATAGTTTCGAGAGTAAAAGCTATCGTATTCGTCATCTGTTTCTTAATTTGTTCGGTGTCTGCTTCGGGACTCATAGCGTTGAGCATTCAAAATATGTCAAAATGAGGTGCCTAGAGAAGAGTGTTTTGAAGAATCTAATTCACCTCTGTCTTTGATGCAACACCCCATGTGATACCTTGAGGACATCTAACTATTAACTTGTTTCCCTTATTTTATTTTCTGCCCTTTGGACCCTTTTTTGTTGAACTACTACGTTCATACGTACATACGTATACGATATTTACCTGTGTACATACACACATCCACACGTATACGATATTTGGTATCAACTTGGTACGTAGTTGATAATTACACTATGCCTTTTGACTATGTATGAGATCCCACGTCGGTTCGAGAGGGGAATGAAACATTCCTTATAAGAGTGTGGAAACCTCTCCTTAGGAGATGCATTTTAAAACTGTGAGGCTGATGACGCTATGTAATAGGCCAAAGTGAACAATATTTGTTAGCTGTGGGCTTGGGCTGTTACATCGCATTACTCCTCTTTCTAGATTCTAGTTTGGTTTTTCTTTTTCAAGTCGTTGAGCATGATTCACTCGACCCTTTTGAGCAATTTTTGGTTATTTATTGTGCTTACTCTCTCCATGTCCAAAACCTTGTACATGAGTCTGTCACTGTTCTTTTCTAGACCTGTGAATGAAAAACGAACACGAGGGAGGACACATTAAACAACCCCTCCCCCGACTCGAGTTCGAGAGAGTGAGAATAGAAAAACCATTAAAGAAAATGTAATGAGAGGCTTTACTGATTTGAGTTTCGAATTCTCTGCTCTAGTTTTTTTCTTCTTTGTTCTATCTATCAACTTCAGGACGCGGGTCCATAGATATTGATTCGTTTATTCTATTCTCTAAAGCAACAGAGTATACACAGAAAACCGTCGCATCCAACACAGGTCTAACGCTTATCTTATTTGTTTTTAACAAGCATTTGGTACTGTCTAGTATACTTAACAAGTGTTTGACTGACATGAGCCAAACACGAACAGGCCGCCCAAACTAAAGCGTCCATGGTTCGTGGCTCGTGGCTCTTCGATATGCTTTTGAAAAAGCGAAAGCAATCCAATGGATGACTTATTGCCTTCTTTCTTGAAGATGAGTTAAAATATTTGATAGTTGCCAGTGTTGAAGCTCCTGTAGTTTCTAAGTTTCTGCACTTTAAAATGGACAGAAGAATCCTTTTAAAATTCAAATTTGTAGCCATTCATCTCTTTTGACAATGGGAGTGGGAACCAGTTGTAAAGGG

mRNA sequence

CAAAGCACTGAAAATTATTTCCCATTTTTTTAACGTTAAATCAAAAGACATTCCGCCAATTCCATCAATTCCTACAATGGGCTTCGTGTTTCACACACTATCACCACCAAAATCTCTCCTCTAAACCCTTCATTTCCAAAACCTCTATATGAAAAGATCTCTAACAATCACTTCCAGGTTCATCTTCCCAATTCAACCCCATCTCTCAATACCCATTTCATGTTCTAAATCGATCTCAAACCAAAACCCCATTTCCGCACAGTTCAACAGTTCCAATTCCTTCCGAGTTGCATGATGTCTAGCCATGGCGCTGGATTCTCCCTCGTTTTTTTGCTGTTTCTCGCCGTTTTAGCGGCTGAGCATGAACTAAATTTCAATCAACCAAATGGGTCTGTATCAGAGATGGTGCCACTGATTGAGGAGGGGAAAATTAATATCATGGAGATGAATGAAACTAGAAGAATACTCGGAAGCTTTCAAGTATGTGCTCCTTGTACTTGCTGTGGAGGTGCTAAGGGCCTCTGTTTACCTTCTCCTTGTTGCTATGCAATCAATTGCAATATCCCCAACAGGCCATTTGGGTTCTGTTCTTTCACTCCCAAATCCTGACGCGGGTCCATAGATATTGATTCGTTTATTCTATTCTCTAAAGCAACAGAGTATACACAGAAAACCGTCGCATCCAACACAGGCCGCCCAAACTAAAGCGTCCATGGTTCGTGGCTCGTGGCTCTTCGATATGCTTTTGAAAAAGCGAAAGCAATCCAATGGATGACTTATTGCCTTCTTTCTTGAAGATGAGTTAAAATATTTGATAGTTGCCAGTGTTGAAGCTCCTGTAGTTTCTAAGTTTCTGCACTTTAAAATGGACAGAAGAATCCTTTTAAAATTCAAATTTGTAGCCATTCATCTCTTTTGACAATGGGAGTGGGAACCAGTTGTAAAGGG

Coding sequence (CDS)

ATGATGTCTAGCCATGGCGCTGGATTCTCCCTCGTTTTTTTGCTGTTTCTCGCCGTTTTAGCGGCTGAGCATGAACTAAATTTCAATCAACCAAATGGGTCTGTATCAGAGATGGTGCCACTGATTGAGGAGGGGAAAATTAATATCATGGAGATGAATGAAACTAGAAGAATACTCGGAAGCTTTCAAGTATGTGCTCCTTGTACTTGCTGTGGAGGTGCTAAGGGCCTCTGTTTACCTTCTCCTTGTTGCTATGCAATCAATTGCAATATCCCCAACAGGCCATTTGGGTTCTGTTCTTTCACTCCCAAATCCTGA

Protein sequence

MMSSHGAGFSLVFLLFLAVLAAEHELNFNQPNGSVSEMVPLIEEGKINIMEMNETRRILGSFQVCAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKS

Homology

[Close]

BLAST of CmaCh11G009430 vs. TAIR 10
Match: AT1G65295.1 (unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01015.1); Has 90 Blast hits to 90 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 128.6 bits (322), Expect = 2.9e-30
Identity = 59/95 (62.11%), Postives = 73/95 (76.84%), Query Frame = 0


Query: 11  LVFLLFLAVLAAEHELNFNQPNGSVSEMVPLIEEGKINIMEMNETRRILGSFQVCAPCTC 70
           L+ LLF   +++ H+ N   P    +EM+ ++  G+   M MNETRR LGSFQ+C+ CTC
Sbjct: 14  LLLLLFSIFISSSHQANEVLPAEGDNEMM-MVPLGEEKFMVMNETRRKLGSFQICSVCTC 73

Query: 71  CGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKS 106
           CGGAKGLCLPSPCCYAINCNIPNRPFG+CSFTPK+
Sbjct: 74  CGGAKGLCLPSPCCYAINCNIPNRPFGYCSFTPKT 107

[Close]

BLAST of CmaCh11G009430 vs. TAIR 10
Match: AT5G01015.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65295.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 3.3e-10
Identity = 38/100 (38.00%), Postives = 52/100 (52.00%), Query Frame = 0


Query: 10  SLVFLLFLAVLAAEHELNFNQPNG---SVSEMVPLIEEGKINIMEMNETRR-ILGSFQVC 69
           SL  ++FL +LA        Q +G   +  EM P +E G    ME    RR ++   ++C
Sbjct: 4   SLHSVIFLGLLATILVTTNGQGDGTGLNAEEMWP-VEVG----MEYRVWRRKLMTPLELC 63

Query: 70  APCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKS 106
             C CC      C   PCC+ INC +PN+PFG C+F PKS
Sbjct: 64  LECKCCSST--TCATMPCCFGINCQLPNKPFGVCAFVPKS 96

The following BLAST results are available for this feature:

BLAST of CmaCh11G009430 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh11G009430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G65295.1	2.9e-30	62.11	unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structu...	[more]
AT5G01015.1	3.3e-10	38.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33786:SF2	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	coord: 2..105
None	No IPR available	PANTHER	PTHR33786	FAMILY NOT NAMED	coord: 2..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G009430.1	CmaCh11G009430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016787	hydrolase activity