CmaCh11G009060 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G009060
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	coiled-coil domain-containing protein R3HCC1L-like isoform X4
Location	Cma_Chr11: 4657785 .. 4660806 (+)
RNA-Seq Expression	CmaCh11G009060
Synteny	CmaCh11G009060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTGTAACATTTCTGCGCTGTTTTCGCTGAGAATCTGAACTCTCATCTTCTTCATCAATGGAATCAATTGAAGCGAAGGAGATAGAGGAAGAGATGCAACGGCGGATTCACGACTGGCGTGAGATATCGGATGACCTCGTCGCTTCCGGAGACACTTATGCTGCTATTTCTCTTATTCAATCGGTCATTCGCTACCTCCATACCACAGACCTCAGTGATCGAGTTCTCCGATTGGCCATCGCTCTCTCCCACTTGTCCAGTCTCTACGCTTCTATTAGCCCTGTGTTCCTAGTCGACGACATTGAGCCTAAGGCTTCGAAATCCCAAGTCTCTTCTTCCGTTGGGTAAAATTAGCTTTCAAGATTTTGTAGTTCCGATTCTTTAAGCTATGCTTTGATTCATTCTTCCGATGGAGTTTCTTGATTGGAGCGAATAGGTTTGAATTCGATTTTAGCTGATTTTGTTTTTCTCTTTTTATCTTTTAGGGATGCCAAGATTGTGGAAGATGATCGACCTTCGCCCTCAAGTGATTCAGTCGATGAAGCATCCGTTCAAACTGGTGAAATTTTCTCGTCTTTGTTCATTTAAAATCAATGGAGTTATTGTGTTTAGTTCACTGGATAAACTCGACGGCTATATTAGGAATTTGCGTTCATATCTCTTAACAGCTAGTTTGTTCATACCAGTTCAAAATCTTAATGAGATTAGTTACGCTGTGAATGGATTTTGGGATCATAGCGAGAAGAAACTCGAGATAATGCCCTGTGATGGGTCGTTGAATTATTGTGCACCTTTTTTTTTTTCTTGAAAACTTTCCTTCGTTTGCTAATATTTAGTTGGAATGATATACGTTTTTCTTGTGAAGGTAATTTGGATCATATTAGAGAAAGTACAAACCGTGCTCAATCCTATATTGGGTCTTGGGATGATGATGATGAAGGTACATTTACGTTGCCTTCAACTTACATTTGATGGAAATTGCTCTATATTTCATTGTAGTTTCATGTCTACTTGGGTGGGTTAACTTATGGCACAATTTATCCTTAAACGCTCTCTTTGTTTCCTTGCGAGGCTTTGGGAGTCTTGTTTTTTAAAATGAATTACTCCATGTTGAGAATTCCTAGGTTGTAGCTCTACAATTTTGTATGTTTCTTGACCTAAGAGACCTTCTTGTTTAGATAGGGCATACTTGCCTCAGTTATATGGCCTAAAGACAACTTTCTTGAAGTAGCATCTATGATTGTAACACCTAAAGATTGCACTGTCATGTCTAGTCTGTCTTAAAAAAGCACAAAGATCGTTTGTGTATGTGCATTCATTTAGAAAGAGTGTCTTTCTGTGGATTGTGGGATTATTACAATGAGAATATGATTGATTTAGCATAAGTGGTTGCTACAATTCCACAGATTGGGAAACTCGTACAGATCGCCTACCATGTGATTTTGTAAGGAGGAAACGTGAACAACAGTATCTAGCAGAATTTCGAGGCAAGGAGACAAAATACCGAACCACTAGACAATATGGGAAGGGGAAATTTGTATGGAGGAAGTGTGAACCGTGCAGTGATAAGCTATCTGATTCTTCAACTATCATCAATGATACAAATAGCAAAGATGCTTCTCAAGTATTGGAGGCGGAAAACGCTCCTCAAGTATTGGAGGTGGAAAACGCTCCTCAAGTATTGAAGGGGGAAGACACTCCTAAAGTATTGGAGGCGGAAAACGCTCCTAAAGTATTGGAGGCGGAAAACACTCCTCAAGTATTGGAGGCGGAAAACGCTCCTCAAGTATTGCAGGGGGAAGACGCTCCTCAAGTGTTGCAGGGGGAACATGCCCCTCAAGTGTTGAAGGGGGAACATGCCCCTCAAGTATTGAAGGGGGAACATGCCCCTCAAGTATTGAAGGGGGAAGATTCTCCTCAAGTATTGCAGGGGGAAGATTCTCCTCAAGTATTTCCTCAAGTATTGCAGGCGAAAGATGCCCCTCGAGTGTTAAGTATGTCACATTTTTCAAATATGATAGAAGGAAATTCTTCGTTGTTATGATAGAATGTGTTTTATATTGATGTTTGTGGACATGAAGTCATAATTATCACACAAGAGCTAAGCCTTTTTTGTTTGTGTGAATCCAGAACACTACGGTACTCGACATGTTCTTGTCCTAGCTGACCTTCCACCGAGTACCAGAACAATAGAACTTGAAAGGCTACTTGGGAGGTGCATGAATTCTGGAGTTCTCCTTCGCTGGGTCAATGAGTCAGTCGTAGTTGTAGTTTTTCAGACACCATCAGCTGGTAAATAGTTTAGAATTTTCGGCACAGTTTATGTCTCTAGGTAATGTTGATGAAGTTGTTTCATGCATTGATAACTATCTTGATTTTTTGATGCAGCACTCGAGGCTCTGAATCGTATTAGATCTCCTTTCACTGCACGCATACTTGATGAGAATGATACTCTTTTGAGCTCAATTTCACCGAGTGGTATGAGCTGCTCCTTGAATTTGCTAGCGTTCATAAGATCTTCCCTTTTATCCTTATATTGAAAAAAGAGGTAATGTTCCATTTTTGGTTTTGGTTTACTGTGGTAATGTCAGATCTGGAGCCTGCAAAGCTGAGGCCAAAGACTGATGTTAGAACAGCCCGGCGGCTGATCGCTCAAGGATTAGGATTGAGGTTTCCAGATTTCCCCACTGCCTTCGCGTTGAAAGGACTAAGAAAACTGGAAGAAGGCACCACAAGTTGAGGGATGAAGCTTGGGGAAGTGATGATCCAAGTTAGGTTAGTTCTTGTACTTTTTTGTTGAATGGATGGAAATTCTTGTTTATCTCAAGAACGCTTTACTCCATTACACATCCCCATGGCTTGAGTTCCATTAAAGAAATATAAAAGTTGGTTCTTATGGCTGCACTACACTCTGTTTTTGAACTGATGAGTGCTCTGTATAACTCGATTACCTCACTTTTATGTCCTAGAAAAGGCATTGCATGATACAAAATGAAGGACATATTGTAGGCTACAAGCAAG

mRNA sequence

TTTTGTAACATTTCTGCGCTGTTTTCGCTGAGAATCTGAACTCTCATCTTCTTCATCAATGGAATCAATTGAAGCGAAGGAGATAGAGGAAGAGATGCAACGGCGGATTCACGACTGGCGTGAGATATCGGATGACCTCGTCGCTTCCGGAGACACTTATGCTGCTATTTCTCTTATTCAATCGGTCATTCGCTACCTCCATACCACAGACCTCAGTGATCGAGTTCTCCGATTGGCCATCGCTCTCTCCCACTTGTCCAGTCTCTACGCTTCTATTAGCCCTGTGTTCCTAGTCGACGACATTGAGCCTAAGGCTTCGAAATCCCAAGTCTCTTCTTCCGTTGGGGATGCCAAGATTGTGGAAGATGATCGACCTTCGCCCTCAAGTGATTCAGTCGATGAAGCATCCGTTCAAACTGGTAATTTGGATCATATTAGAGAAAGTACAAACCGTGCTCAATCCTATATTGGGTCTTGGGATGATGATGATGAAGATTGGGAAACTCGTACAGATCGCCTACCATGTGATTTTGTAAGGAGGAAACGTGAACAACAGTATCTAGCAGAATTTCGAGGCAAGGAGACAAAATACCGAACCACTAGACAATATGGGAAGGGGAAATTTGTATGGAGGAAGTGTGAACCGTGCAGTGATAAGCTATCTGATTCTTCAACTATCATCAATGATACAAATAGCAAAGATGCTTCTCAAGTATTGGAGGCGGAAAACGCTCCTCAAGTATTGGAGGTGGAAAACGCTCCTCAAGTATTGAAGGGGGAAGACACTCCTAAAGTATTGGAGGCGGAAAACGCTCCTAAAGTATTGGAGGCGGAAAACACTCCTCAAGTATTGGAGGCGGAAAACGCTCCTCAAGTATTGCAGGGGGAAGACGCTCCTCAAGTGTTGCAGGGGGAACATGCCCCTCAAGTGTTGAAGGGGGAACATGCCCCTCAAGTATTGAAGGGGGAACATGCCCCTCAAGTATTGAAGGGGGAAGATTCTCCTCAAGTATTGCAGGGGGAAGATTCTCCTCAAGTATTTCCTCAAGTATTGCAGGCGAAAGATGCCCCTCGAGTGTTAAAACACTACGGTACTCGACATGTTCTTGTCCTAGCTGACCTTCCACCGAGTACCAGAACAATAGAACTTGAAAGGCTACTTGGGAGGTGCATGAATTCTGGAGTTCTCCTTCGCTGGGTCAATGAGTCAGTCGTAGTTGTAGTTTTTCAGACACCATCAGCTGCACTCGAGGCTCTGAATCGTATTAGATCTCCTTTCACTGCACGCATACTTGATGAGAATGATACTCTTTTGAGCTCAATTTCACCGAGTGATCTGGAGCCTGCAAAGCTGAGGCCAAAGACTGATGTTAGAACAGCCCGGCGGCTGATCGCTCAAGGATTAGGATTGAGGTTTCCAGATTTCCCCACTGCCTTCGCGTTGAAAGGACTAAGAAAACTGGAAGAAGGCACCACAAGTTGAGGGATGAAGCTTGGGGAAGTGATGATCCAAGTTAGGTTAGTTCTTGTACTTTTTTGTTGAATGGATGGAAATTCTTGTTTATCTCAAGAACGCTTTACTCCATTACACATCCCCATGGCTTGAGTTCCATTAAAGAAATATAAAAGTTGGTTCTTATGGCTGCACTACACTCTGTTTTTGAACTGATGAGTGCTCTGTATAACTCGATTACCTCACTTTTATGTCCTAGAAAAGGCATTGCATGATACAAAATGAAGGACATATTGTAGGCTACAAGCAAG

Coding sequence (CDS)

ATGGAATCAATTGAAGCGAAGGAGATAGAGGAAGAGATGCAACGGCGGATTCACGACTGGCGTGAGATATCGGATGACCTCGTCGCTTCCGGAGACACTTATGCTGCTATTTCTCTTATTCAATCGGTCATTCGCTACCTCCATACCACAGACCTCAGTGATCGAGTTCTCCGATTGGCCATCGCTCTCTCCCACTTGTCCAGTCTCTACGCTTCTATTAGCCCTGTGTTCCTAGTCGACGACATTGAGCCTAAGGCTTCGAAATCCCAAGTCTCTTCTTCCGTTGGGGATGCCAAGATTGTGGAAGATGATCGACCTTCGCCCTCAAGTGATTCAGTCGATGAAGCATCCGTTCAAACTGGTAATTTGGATCATATTAGAGAAAGTACAAACCGTGCTCAATCCTATATTGGGTCTTGGGATGATGATGATGAAGATTGGGAAACTCGTACAGATCGCCTACCATGTGATTTTGTAAGGAGGAAACGTGAACAACAGTATCTAGCAGAATTTCGAGGCAAGGAGACAAAATACCGAACCACTAGACAATATGGGAAGGGGAAATTTGTATGGAGGAAGTGTGAACCGTGCAGTGATAAGCTATCTGATTCTTCAACTATCATCAATGATACAAATAGCAAAGATGCTTCTCAAGTATTGGAGGCGGAAAACGCTCCTCAAGTATTGGAGGTGGAAAACGCTCCTCAAGTATTGAAGGGGGAAGACACTCCTAAAGTATTGGAGGCGGAAAACGCTCCTAAAGTATTGGAGGCGGAAAACACTCCTCAAGTATTGGAGGCGGAAAACGCTCCTCAAGTATTGCAGGGGGAAGACGCTCCTCAAGTGTTGCAGGGGGAACATGCCCCTCAAGTGTTGAAGGGGGAACATGCCCCTCAAGTATTGAAGGGGGAACATGCCCCTCAAGTATTGAAGGGGGAAGATTCTCCTCAAGTATTGCAGGGGGAAGATTCTCCTCAAGTATTTCCTCAAGTATTGCAGGCGAAAGATGCCCCTCGAGTGTTAAAACACTACGGTACTCGACATGTTCTTGTCCTAGCTGACCTTCCACCGAGTACCAGAACAATAGAACTTGAAAGGCTACTTGGGAGGTGCATGAATTCTGGAGTTCTCCTTCGCTGGGTCAATGAGTCAGTCGTAGTTGTAGTTTTTCAGACACCATCAGCTGCACTCGAGGCTCTGAATCGTATTAGATCTCCTTTCACTGCACGCATACTTGATGAGAATGATACTCTTTTGAGCTCAATTTCACCGAGTGATCTGGAGCCTGCAAAGCTGAGGCCAAAGACTGATGTTAGAACAGCCCGGCGGCTGATCGCTCAAGGATTAGGATTGAGGTTTCCAGATTTCCCCACTGCCTTCGCGTTGAAAGGACTAAGAAAACTGGAAGAAGGCACCACAAGTTGA

Protein sequence

MESIEAKEIEEEMQRRIHDWREISDDLVASGDTYAAISLIQSVIRYLHTTDLSDRVLRLAIALSHLSSLYASISPVFLVDDIEPKASKSQVSSSVGDAKIVEDDRPSPSSDSVDEASVQTGNLDHIRESTNRAQSYIGSWDDDDEDWETRTDRLPCDFVRRKREQQYLAEFRGKETKYRTTRQYGKGKFVWRKCEPCSDKLSDSSTIINDTNSKDASQVLEAENAPQVLEVENAPQVLKGEDTPKVLEAENAPKVLEAENTPQVLEAENAPQVLQGEDAPQVLQGEHAPQVLKGEHAPQVLKGEHAPQVLKGEDSPQVLQGEDSPQVFPQVLQAKDAPRVLKHYGTRHVLVLADLPPSTRTIELERLLGRCMNSGVLLRWVNESVVVVVFQTPSAALEALNRIRSPFTARILDENDTLLSSISPSDLEPAKLRPKTDVRTARRLIAQGLGLRFPDFPTAFALKGLRKLEEGTTS

Homology

[Close]

BLAST of CmaCh11G009060 vs. ExPASy Swiss-Prot
Match: Q8BJM3 (Coiled-coil domain-containing protein R3HCC1L OS=Mus musculus OX=10090 GN=R3hcc1l PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-06
Identity = 39/126 (30.95%), Postives = 60/126 (47.62%), Query Frame = 0


Query: 348 HVLVLADLPPSTRTIELERLLGRCMNSGVLLRWVNESVVVVVFQTPSAALEALNRIRSPF 407
           HV+ + D P   RT +L R+       G  ++WV+++  + VF +P  A +AL    +  
Sbjct: 627 HVIEIYDFPQEFRTEDLLRIFCSYQKKGFDIKWVDDTHALGVFASPITARDALGTKHTMV 686

Query: 408 TARILDENDTLLSS---ISPSDLEPAKLRPKTDVRTARRLIAQGLGLRFPDFPTAFALKG 467
             R L +      +        L+PAK RP+T    ARRL+   LG+R     T    + 
Sbjct: 687 KIRPLSQATRAAKAKARACAEFLQPAKERPETSAALARRLVISALGVRSKQSKTEREAE- 746

Query: 468 LRKLEE 471
           LRKL+E
Sbjct: 747 LRKLQE 751

[Close]

BLAST of CmaCh11G009060 vs. ExPASy Swiss-Prot
Match: Q8BLB7 (Lethal(3)malignant brain tumor-like protein 3 OS=Mus musculus OX=10090 GN=L3mbtl3 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 6.3e-05
Identity = 40/148 (27.03%), Postives = 70/148 (47.30%), Query Frame = 0


Query: 210 DTNSKDASQVLEAENAPQVLEVENAPQVLKGEDTPKVLEAENAPKVLEAENTPQVLEAEN 269
           D+  K  ++V  +  A +V+  E  P V + +   +V + ++A    +A+  PQ  +A+ 
Sbjct: 640 DSEKKKENEVKTSAEA-KVVREEPTPSVQQSQPPQQVQQVQHAQPPQQAQKAPQAQQAQQ 699

Query: 270 APQVLQGEDAPQVLQGEHAPQVLKGEHAPQVLKGEHAPQVLKGEDSPQVLQGEDSPQVFP 329
           A Q  Q   APQ  Q + APQV + + APQ  + +   Q  + + +P V Q +   Q  P
Sbjct: 700 AQQAQQAPQAPQTPQPQQAPQVQQAQQAPQAQQAQQPQQAQQPQQAPPVQQPQQVQQAQP 759

Query: 330 QVLQAKDAPRVLKHYGTRHVLVLADLPP 358
              QA+   +  +    R  + L+  PP
Sbjct: 760 TQQQAQTQQQAQR----RSAVFLSFKPP 782

[Close]

BLAST of CmaCh11G009060 vs. ExPASy Swiss-Prot
Match: P27951 (IgA FC receptor OS=Streptococcus agalactiae OX=1311 GN=bag PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.4e-04
Identity = 34/120 (28.33%), Postives = 62/120 (51.67%), Query Frame = 0


Query: 221 EAENAPQVLEVENAPQVLKGEDTPKVLEAENAPKVLEAENTPQVLEAENAPQVLQGEDAP 280
           E  + P++ E+  AP   +  DTP V E+  AP+      +P+  EA + P+  +  +AP
Sbjct: 828 ETPDTPKIPELPQAPDTPQAPDTPHVPESPKAPEAPRVPESPKTPEAPHVPESPKAPEAP 887

Query: 281 QVLQGEHAPQVLKGEHAPQVLKGEHAPQVLKGEDSPQVLQGEDSPQVFPQVLQAKDAPRV 340
           +V     +P+  +  H P+  K   AP++ +   +P V +  D P++ P V +  DAP++
Sbjct: 888 RV---PESPKTPEAPHVPESPKTPEAPKIPEPPKTPDVPKLPDVPKL-PDVPKLPDAPKL 943

[Close]

BLAST of CmaCh11G009060 vs. TAIR 10
Match: AT5G22120.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-28
Identity = 121/459 (26.36%), Postives = 191/459 (41.61%), Query Frame = 0


Query: 10  EEEMQRRIHDWREISDDLVASGDTYAAISLIQSVIRYLHTT-------DLSDRVLRLAIA 69
           EEE +    +W E  +DLV +GD  AAIS ++S+   L +        + ++  L+L+ A
Sbjct: 8   EEEGRISEPNWSERVEDLVVAGDVTAAISFLESLETNLQSRLGSSSSGERTEFGLQLSAA 67

Query: 70  LSHLSSLYASISPVFLVDD-------IEPKASKSQVSSSVGDAKIVEDDRPSPSSDSVDE 129
           L+ L+ LY+S       D+       I+ +A    ++SS     +  +++   SS    +
Sbjct: 68  LTQLADLYSSEGLSLKSDELRTRSSLIKQRALDCDLASSRSSGNV--ENQSVASSGLKSD 127

Query: 130 ASVQTGNLDHIRESTNRAQSYIGSWDDDDEDWETRTDRLPCDFVRRKREQQYLAEFRGKE 189
            +V + + D   E +  + S   + D  D+DWE   D  P   +    E   +++   +E
Sbjct: 128 PNVSSFDADGKTEDSKVSSSNSAAHDSSDDDWEALADVEPSKLL-PVEELPEISKLSVEE 187

Query: 190 TKYRTTRQYGKGKFVWRKCEPCSDKLSDSSTIINDTNSKDASQVLEAENAPQVLEVENAP 249
            K +  ++ G+G F ++     SD+    S   +D+   D S+                 
Sbjct: 188 PKVQGPKRRGRGTFTYKSDAMYSDRDFSESRFDDDSEDNDLSR----------------- 247

Query: 250 QVLKGEDTPKVLEAENAPKVLEAENTPQVLEAENAPQVLQGEDAPQVLQGEHAPQVLKGE 309
                                E+E T + L+++                           
Sbjct: 248 ---------------------ESEKTDESLKSK--------------------------- 307

Query: 310 HAPQVLKGEHAPQVLKGEDSPQVLQGEDSPQVFPQVLQAKDAPRVLKHYGTRHVLVLADL 369
                                                           YGTRHVLVLA  
Sbjct: 308 ------------------------------------------------YGTRHVLVLAGF 350

Query: 370 PPSTRTIELERLLGRCMNSGVLLRWVNESVVVVVFQTPSAALEALNRIRSPFTARILDEN 429
            PS RT ELE+L     +SG ++RWVN++  + VF+TPSAALEA   ++  FT R+LD+N
Sbjct: 368 SPSLRTTELEKLFKDFKDSGFIIRWVNDTTALAVFKTPSAALEACKHVQCSFTIRVLDDN 350

Query: 430 DTLLSSISPSDLEPAKLRPKTDVRTARRLIAQGLGLRFP 455
           D+LL SIS  DLEP   RPKT  +TA+RLIA  +GL+ P
Sbjct: 428 DSLLGSISGKDLEPPSQRPKTSAKTAQRLIAHSMGLKLP 350

The following BLAST results are available for this feature:

BLAST of CmaCh11G009060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8BJM3	1.1e-06	30.95	Coiled-coil domain-containing protein R3HCC1L OS=Mus musculus OX=10090 GN=R3hcc1...	[more]
Q8BLB7	6.3e-05	27.03	Lethal(3)malignant brain tumor-like protein 3 OS=Mus musculus OX=10090 GN=L3mbtl...	[more]
P27951	2.4e-04	28.33	IgA FC receptor OS=Streptococcus agalactiae OX=1311 GN=bag PE=1 SV=1	[more]

BLAST of CmaCh11G009060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22120.1	1.1e-28	26.36	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..245
None	No IPR available	PANTHER	PTHR21678:SF0	OS01G0965600 PROTEIN	coord: 10..470
IPR039884	Coiled-coil domain-containing protein R3HC1/R3HCL	PANTHER	PTHR21678	GROWTH INHIBITION AND DIFFERENTIATION RELATED PROTEIN 88	coord: 10..470

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G009060.1	CmaCh11G009060.1	mRNA