Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AACAAGCACACCACAAGAGAAAAAAATGGCAAAATCCTTTGCTATCATTCTTTTTGCCCTTTGCTTCCTCTCGACCCTCGACGTCTCCGTCTCGAAAAAAGATCACTTCGTCGTCGAGGGCAAAGTTTATTGTGACACGTGCCGCATCCAATTCTTCACCCGTGTCAGTAAATGGATGCATGGTAACACAACTCCTTCGTTCATTCCTTTTGTATCATATGTTCAAACTCTTGTAATGTCATTTCTTTATAATGTATCGTGTATCAGGAGCTAAGGTGAAGTTGGTATGCCGTGAGGAGGAGGGAGGAAGCGAGACGTTAGCCGTCGAGGCGGAGACCGGCAAGAACGGAGAATACACGATCAAGGTGGACGGTGACCATGAGGAGGAGGTTTGTGAAGTGAATTTGGTGAAGAGTACTGATGATGACTGTGCTGAGATTCCCACGGATGGATTTGGGCATAGGGCGAGAGTGAGCATCACGGCCAACGATGGTATCACCAACCCTGTGCGTCAACCTAACCCACTTGGGTTCATGAAGAAGGAGACACTTCCCCAATGCAAAGAGGTTCTTCGTGAGCTTGGGTTCGATGAGGCTGGTCTTCCCGTTTGA
mRNA sequence
AACAAGCACACCACAAGAGAAAAAAATGGCAAAATCCTTTGCTATCATTCTTTTTGCCCTTTGCTTCCTCTCGACCCTCGACGTCTCCGTCTCGAAAAAAGATCACTTCGTCGTCGAGGGCAAAGTTTATTGTGACACGTGCCGCATCCAATTCTTCACCCGTGTCAGTAAATGGATGCATGGAGCTAAGGTGAAGTTGGTATGCCGTGAGGAGGAGGGAGGAAGCGAGACGTTAGCCGTCGAGGCGGAGACCGGCAAGAACGGAGAATACACGATCAAGGTGGACGGTGACCATGAGGAGGAGGTTTGTGAAGTGAATTTGGTGAAGAGTACTGATGATGACTGTGCTGAGATTCCCACGGATGGATTTGGGCATAGGGCGAGAGTGAGCATCACGGCCAACGATGGTATCACCAACCCTGTGCGTCAACCTAACCCACTTGGGTTCATGAAGAAGGAGACACTTCCCCAATGCAAAGAGGTTCTTCGTGAGCTTGGGTTCGATGAGGCTGGTCTTCCCGTTTGA
Coding sequence (CDS)
ATGGCAAAATCCTTTGCTATCATTCTTTTTGCCCTTTGCTTCCTCTCGACCCTCGACGTCTCCGTCTCGAAAAAAGATCACTTCGTCGTCGAGGGCAAAGTTTATTGTGACACGTGCCGCATCCAATTCTTCACCCGTGTCAGTAAATGGATGCATGGAGCTAAGGTGAAGTTGGTATGCCGTGAGGAGGAGGGAGGAAGCGAGACGTTAGCCGTCGAGGCGGAGACCGGCAAGAACGGAGAATACACGATCAAGGTGGACGGTGACCATGAGGAGGAGGTTTGTGAAGTGAATTTGGTGAAGAGTACTGATGATGACTGTGCTGAGATTCCCACGGATGGATTTGGGCATAGGGCGAGAGTGAGCATCACGGCCAACGATGGTATCACCAACCCTGTGCGTCAACCTAACCCACTTGGGTTCATGAAGAAGGAGACACTTCCCCAATGCAAAGAGGTTCTTCGTGAGCTTGGGTTCGATGAGGCTGGTCTTCCCGTTTGA
Protein sequence
MAKSFAIILFALCFLSTLDVSVSKKDHFVVEGKVYCDTCRIQFFTRVSKWMHGAKVKLVCREEEGGSETLAVEAETGKNGEYTIKVDGDHEEEVCEVNLVKSTDDDCAEIPTDGFGHRARVSITANDGITNPVRQPNPLGFMKKETLPQCKEVLRELGFDEAGLPV
Homology
BLAST of CmaCh11G008800 vs. ExPASy Swiss-Prot
Match:
O49813 (Olee1-like protein OS=Betula pendula OX=3505 PE=2 SV=1)
HSP 1 Score: 177.2 bits (448), Expect = 1.6e-43
Identity = 90/161 (55.90%), Postives = 114/161 (70.81%), Query Frame = 0
Query: 1 MAKSFAIILFALCFLSTLDVSVSKKDHFVVEGKVYCDTCRIQFFTRVSKWMHGAKVKLVC 60
MAKS I ALCFLS L + S + F VEGKVYCD CR QF T++S +M GAKV L C
Sbjct: 1 MAKSIIIQAPALCFLSLLGFAYS-ESRFFVEGKVYCDNCRTQFVTKLSTYMKGAKVSLEC 60
Query: 61 REEEGGSETLAVEAETGKNGEYTIKVDGDHEEEVCEVNLVKSTDDDCAEIPTDGFGHR-A 120
R EGG+ + ++ET K+G Y I VDGDHEEE+CE+ L KS+D DC+E+ D F + A
Sbjct: 61 RNREGGTLIYSSDSETDKSGTYRIPVDGDHEEEICEIALKKSSDPDCSEVSKDPFLKKSA 120
Query: 121 RVSITANDGITNPVRQPNPLGFMKKETLPQCKEVLRELGFD 161
R+S+T N+GI+ PVR NPLGFMKK+ LP+C + LRELG +
Sbjct: 121 RISLTKNNGISTPVRLANPLGFMKKKPLPECAKALRELGMN 160
BLAST of CmaCh11G008800 vs. ExPASy Swiss-Prot
Match:
Q8LGR0 (Pollen allergen Che a 1 OS=Chenopodium album OX=3559 PE=1 SV=1)
HSP 1 Score: 156.0 bits (393), Expect = 3.7e-37
Identity = 79/160 (49.38%), Postives = 110/160 (68.75%), Query Frame = 0
Query: 1 MAKSFAIILF--ALCFLSTLDVSVSKKDHFVVEGKVYCDTCRIQFFTRVSKWMHGAKVKL 60
MAK A+ L ALC LS V+ + ++HF V+G VYCDTCRIQF TR+S M GA VKL
Sbjct: 1 MAKCQAVFLLVGALCVLSLAGVANAAENHFKVQGMVYCDTCRIQFMTRISTIMEGATVKL 60
Query: 61 VCREEEGGSETLAVEAETGKNGEYTIKVDGDHEEEVCEVNLVKSTDDDCAEIPTDGFGHR 120
CR G++T EA T K G+Y+I V+GD E+++CE+ LVKS + +C+E+ D + +
Sbjct: 61 ECRNITAGTQTFKAEAVTDKVGQYSIPVNGDFEDDICEIELVKSPNSECSEVSHDVYAKQ 120
Query: 121 -ARVSITANDGITNPVRQPNPLGFMKKETLPQCKEVLREL 158
A+VS+T+N+G + +R N LGFM+KE L +C EVL+EL
Sbjct: 121 SAKVSLTSNNGEASDIRSANALGFMRKEPLKECPEVLKEL 160
BLAST of CmaCh11G008800 vs. ExPASy Swiss-Prot
Match:
Q29W25 (Pollen allergen Cro s 1 OS=Crocus sativus OX=82528 PE=1 SV=1)
HSP 1 Score: 152.9 bits (385), Expect = 3.2e-36
Identity = 78/160 (48.75%), Postives = 108/160 (67.50%), Query Frame = 0
Query: 1 MAKSFAIILF--ALCFLSTLDVSVSKKDHFVVEGKVYCDTCRIQFFTRVSKWMHGAKVKL 60
M K A+ L ALC LS V+ + ++HF V+G VYCDTCRIQF TRVS M GA VKL
Sbjct: 1 MGKCQAVFLLVGALCVLSLAGVANAAENHFKVQGMVYCDTCRIQFMTRVSTIMEGATVKL 60
Query: 61 VCREEEGGSETLAVEAETGKNGEYTIKVDGDHEEEVCEVNLVKSTDDDCAEIPTDGFGHR 120
CR G++T EA T K G+Y+I V GD ++++CE+ LVKS + +C+E+ D + +
Sbjct: 61 ECRNITAGTQTFKAEAVTDKVGQYSIPVHGDFQDDICEIELVKSPNSECSEVSHDVYAKQ 120
Query: 121 -ARVSITANDGITNPVRQPNPLGFMKKETLPQCKEVLREL 158
A+VS+T+N+G + +R N LGFM+KE L +C EVL+EL
Sbjct: 121 SAKVSLTSNNGEASDIRSANALGFMRKEPLKECPEVLKEL 160
BLAST of CmaCh11G008800 vs. ExPASy Swiss-Prot
Match:
E2D0Z0 (Pollen allergen Sal k 5.0101 (Fragment) OS=Kali turgidum OX=151250 PE=1 SV=1)
HSP 1 Score: 149.1 bits (375), Expect = 4.6e-35
Identity = 72/129 (55.81%), Postives = 92/129 (71.32%), Query Frame = 0
Query: 30 VEGKVYCDTCRIQFFTRVSKWMHGAKVKLVCREEEGGSETLAVEAETGKNGEYTIKVDGD 89
V+G VYCDTCRIQF TRVS M GA V L CR G+ET EA T K G YTIKVDGD
Sbjct: 11 VKGMVYCDTCRIQFITRVSTMMEGATVSLQCRNLTAGTETFKAEAVTDKLGMYTIKVDGD 70
Query: 90 HEEEVCEVNLVKSTDDDCAEIPTDGFGHR-ARVSITANDGITNPVRQPNPLGFMKKETLP 149
HE+++C++ LVKS +C+EIP D + + A+V++T+N+G + VR N LGF+KK LP
Sbjct: 71 HEDDICQIVLVKSPGQECSEIPNDVYSEQAAKVTLTSNNGEASDVRNANALGFLKKAPLP 130
Query: 150 QCKEVLREL 158
+C EVL+EL
Sbjct: 131 ECPEVLKEL 139
BLAST of CmaCh11G008800 vs. ExPASy Swiss-Prot
Match:
P13447 (Anther-specific protein LAT52 OS=Solanum lycopersicum OX=4081 GN=LAT52 PE=2 SV=1)
HSP 1 Score: 142.1 bits (357), Expect = 5.6e-33
Identity = 76/158 (48.10%), Postives = 105/158 (66.46%), Query Frame = 0
Query: 1 MAKSFAIILFALCFLSTLDVSVSKKDHFVVEGKVYCDTCRIQFFTRVSKWMHGAKVKLVC 60
MAK+ ++L ALC L+ + + + + F VEGKVYCDTCR+QF T++S+ + GA VKL C
Sbjct: 1 MAKAI-VLLSALCILALANFAHCRPEVFDVEGKVYCDTCRVQFETKLSENLEGATVKLQC 60
Query: 61 REEEGGSETLAVEAETGKNGEYTIKVDGDHEEEVCEVNLVKSTDDDCAEIPTDGFGHRAR 120
R +ET +VE T K+G+Y + V+GDHE ++CEV +VKS +DC E G+ +AR
Sbjct: 61 RNISTEAETFSVEGVTDKDGKYKLTVNGDHENDICEVTVVKSPREDCKE-SVSGY-EKAR 120
Query: 121 VSITANDGITNPVRQPNPLGFMKKETLPQCKEVLRELG 159
+ + N GI N VR NPL FMK E++ CKE L ELG
Sbjct: 121 IECSDNVGIHNAVRFANPLFFMKAESVQGCKEALDELG 155
BLAST of CmaCh11G008800 vs. TAIR 10
Match:
AT1G29140.1 (Pollen Ole e 1 allergen and extensin family protein )
HSP 1 Score: 149.4 bits (376), Expect = 2.5e-36
Identity = 79/164 (48.17%), Postives = 108/164 (65.85%), Query Frame = 0
Query: 1 MAKSFAIIL-FALCFLSTLDVSVSKK---DHFVVEGKVYCDTCRIQFFTRVSKWMHGAKV 60
MAK F + L ALCF + + + + D F ++G VYCDTCR+QF TR+SK++ GAKV
Sbjct: 1 MAKFFIVFLASALCFTTLVHFTAADADDFDKFHIKGSVYCDTCRVQFITRISKFLEGAKV 60
Query: 61 KLVCREEEGGSETLAVEAETGKNGEYTIKVDGDHEEEVCEVNLVKSTDDDCAEIPTDGF- 120
KL C+ E + TL EA T G Y ++V GDHEEEVCE+ L++S D +C ++ F
Sbjct: 61 KLECKGRENQTVTLTKEAVTDNAGNYQMEVMGDHEEEVCEIVLLQSPDPECGDVNNQEFL 120
Query: 121 GHRARVSITANDGI-TNPVRQPNPLGFMKKETLPQCKEVLRELG 159
+ AR+S+TANDGI +N R NPLGFM+K L +C +V +ELG
Sbjct: 121 RNAARISLTANDGIVSNETRTINPLGFMRKTPLAECPQVFKELG 164
BLAST of CmaCh11G008800 vs. TAIR 10
Match:
AT5G45880.1 (Pollen Ole e 1 allergen and extensin family protein )
HSP 1 Score: 142.5 bits (358), Expect = 3.0e-34
Identity = 69/135 (51.11%), Postives = 93/135 (68.89%), Query Frame = 0
Query: 26 DHFVVEGKVYCDTCRIQFFTRVSKWMHGAKVKLVCREEEGGSETLAVEAETGKNGEYTIK 85
D F ++G VYCDTCR+QF TR+SK++ GAKVKL CR G+ TL EA T K G Y ++
Sbjct: 33 DRFQIQGSVYCDTCRVQFVTRLSKFLEGAKVKLECRSRTNGTITLTKEAVTDKTGSYKME 92
Query: 86 VDGDHEEEVCEVNLVKSTDDDCAEIPTDGF-GHRARVSITANDGI-TNPVRQPNPLGFMK 145
V GDHEEEVCE+ LV+S D C+++ T+ + + A++S+TANDGI ++ R NPLGFM
Sbjct: 93 VTGDHEEEVCELVLVQSPDSGCSDVSTEAYLRNAAKISLTANDGIVSHETRIVNPLGFMV 152
Query: 146 KETLPQCKEVLRELG 159
+ L C +ELG
Sbjct: 153 QTPLADCPAAFKELG 167
BLAST of CmaCh11G008800 vs. TAIR 10
Match:
AT4G18596.1 (Pollen Ole e 1 allergen and extensin family protein )
HSP 1 Score: 141.4 bits (355), Expect = 6.7e-34
Identity = 72/159 (45.28%), Postives = 102/159 (64.15%), Query Frame = 0
Query: 5 FAIILFALCFLSTLDVSVSKK---DHFVVEGKVYCDTCRIQFFTRVSKWMHGAKVKLVCR 64
F + A+C S V+++ D F ++G VYCDTCR+QF TR+SK++ GAKVKL CR
Sbjct: 7 FFFFVSAVCLSSLAGVAIADADDFDRFQIQGSVYCDTCRVQFVTRLSKFLEGAKVKLECR 66
Query: 65 EEEGGSETLAVEAETGKNGEYTIKVDGDHEEEVCEVNLVKSTDDDCAEIPTDGF-GHRAR 124
G+ TL EA T K G Y ++V GDHEEEVCE+ LV+S D C+++ + + + A+
Sbjct: 67 SRTNGTVTLTKEAVTDKTGSYRMEVTGDHEEEVCELVLVESPDSGCSDVSKEAYLRNAAK 126
Query: 125 VSITANDGI-TNPVRQPNPLGFMKKETLPQCKEVLRELG 159
+S+TANDGI ++ R NPLGFM + +C +ELG
Sbjct: 127 ISLTANDGIVSHETRIVNPLGFMVQTPSAECPAAFKELG 165
BLAST of CmaCh11G008800 vs. TAIR 10
Match:
AT4G08685.1 (Pollen Ole e 1 allergen and extensin family protein )
HSP 1 Score: 108.2 bits (269), Expect = 6.3e-24
Identity = 59/154 (38.31%), Postives = 91/154 (59.09%), Query Frame = 0
Query: 4 SFAIILFALCFLSTLDVSV-SKKDHFVVEGKVYCDTCRIQFFTRVSKWMHGAKVKLVCRE 63
S A++L ALCFL L ++ K+ FVV G+VYCDTC F T S ++ GA V+L C++
Sbjct: 2 SKAVLLVALCFLPALAIAARPNKNPFVVRGRVYCDTCLAGFETPASTYISGAVVRLECKD 61
Query: 64 EEGGSETLAVEAETGKNGEYTIKVDGDHEEEVCEVNLVKSTDDDCAEIPTDGFGH-RARV 123
T + EA T G Y I V+ DH+E+ C+ LV+S+ C+ + GH RARV
Sbjct: 62 RRTMELTYSHEARTDSTGSYKILVNEDHDEQFCDAMLVRSSQLRCSNVSP---GHDRARV 121
Query: 124 SITANDGITNPVRQPNPLGFMKKETLPQCKEVLR 156
++T +GI + R N +GF++ +P C ++++
Sbjct: 122 TLTRFNGIASDDRFANNMGFLRDAAMPGCADIMK 152
BLAST of CmaCh11G008800 vs. TAIR 10
Match:
AT5G10130.1 (Pollen Ole e 1 allergen and extensin family protein )
HSP 1 Score: 88.6 bits (218), Expect = 5.2e-18
Identity = 51/150 (34.00%), Postives = 78/150 (52.00%), Query Frame = 0
Query: 1 MAKSFAIILFALCFLSTLDVSVSKKDHFVVEGKVYCDTCRIQFFTRVSKWMHGAKVKLVC 60
MAKSF ++ LC L +++ F +EG VYCDTCR F T ++++ GA+V++VC
Sbjct: 1 MAKSFVPLIAVLCVLVLPLAAMAVGTPFHIEGSVYCDTCRFGFETIATQYIRGARVRIVC 60
Query: 61 REEEGGSETLAVEAETGKNGEYTIKVDGDHEEEVCEVNLVKSTDDDCAEIPTDGFGHRAR 120
++ L A TG +G+Y + V GD +++ C LV S C E D A
Sbjct: 61 KDRVTLKSELVGVAVTGPDGKYKVAVRGDRQDQQCLAELVHSPLSRCQE--ADPGRSTAT 120
Query: 121 VSITANDGITNPVRQPNPLGFMKKETLPQC 151
V +T ++G + N +GF + E L C
Sbjct: 121 VILTRSNGAASTRHYANAMGFFRDEPLRGC 148
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
O49813 | 1.6e-43 | 55.90 | Olee1-like protein OS=Betula pendula OX=3505 PE=2 SV=1 | [more] |
Q8LGR0 | 3.7e-37 | 49.38 | Pollen allergen Che a 1 OS=Chenopodium album OX=3559 PE=1 SV=1 | [more] |
Q29W25 | 3.2e-36 | 48.75 | Pollen allergen Cro s 1 OS=Crocus sativus OX=82528 PE=1 SV=1 | [more] |
E2D0Z0 | 4.6e-35 | 55.81 | Pollen allergen Sal k 5.0101 (Fragment) OS=Kali turgidum OX=151250 PE=1 SV=1 | [more] |
P13447 | 5.6e-33 | 48.10 | Anther-specific protein LAT52 OS=Solanum lycopersicum OX=4081 GN=LAT52 PE=2 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT1G29140.1 | 2.5e-36 | 48.17 | Pollen Ole e 1 allergen and extensin family protein | [more] |
AT5G45880.1 | 3.0e-34 | 51.11 | Pollen Ole e 1 allergen and extensin family protein | [more] |
AT4G18596.1 | 6.7e-34 | 45.28 | Pollen Ole e 1 allergen and extensin family protein | [more] |
AT4G08685.1 | 6.3e-24 | 38.31 | Pollen Ole e 1 allergen and extensin family protein | [more] |
AT5G10130.1 | 5.2e-18 | 34.00 | Pollen Ole e 1 allergen and extensin family protein | [more] |