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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. ATGGAGATGGAGAATCAACAACCGTTTCAGATCGACCTGGGGAATCTAATGGCGTTCAATCCTCACCATAAATTTCCTTCTCTCTCTTCCTCCAGGTTAGTTTGTTCTTCCCTCCCAAAAACGCACTATCTCGCGAATTTTTTCGAATATCGTATCTCAAGTAGCCAGATGAAACGAGGTTTGTAGAGAATTTTGCCCCGAATTTCTCTTGTTTTGTCACACTGAGGTCGAAGAACACTGGCGGGATGTATTTTTTTGGCTTTGCGATACCATGCTATTCACATTGCATTGTACTGTTTTCTGAAATTCGATGGTGCAGATTTTATGGCCTTTGTTTCGCATACGATGAATTTCTAGTAGATATAAGCATTGGGTGAACGTTCGTGAACATTTATGTCTGCATTGTTGACTCTTAAGCGTTAAATTATTGCCAATTAAATTAGAAATCCTTAACCTGTGAATATTTATCTTCCTTCTTTGATGTTCGGAAAAATATAATTGCTTGTTTTATTTGAAGAATACCGGTACCATCTTCGCCTAATTTATTTTTTTGCTCGATTATTAGGGAGGATCTAGTTAGTGAATGTCTGCAAAAGGGCGCAGAGTTAGCTCAATTTATTGCTAATGATCTTTTCAACCTGCCTTCAACTGAAGACAGAGATGGTCCGCTCGTGAGGTTGCCTCCACCTTCTACACGATTGCCGAGAGAGAAACCTGTAAGGCCTCGTGCTACTTTATAAATTTCTTCCCTTGGTAACCACTGTCACTGATCGTGCTTTATCCATGAGCAGCGGCTGCAAATGTTAATTTTGTAGTTCTTGGCTGAGATGATCTTTCTTTTCTTTTTCCAGTTGCCAAAGCCCAAACCTCCTACAAAATGGGAGCTTTTTGCCAAAAAAAGAGGTCAGTTGCTTTGTGTGCCAAAAAAAGAGGGTATATTTGATACAGCACATCCTCCAAAGAAAAAAAGAGGATAGAACTACTGAAACAAGAAATAGCAGCACAAACTTAGTTAATCTGATGGCAATATATTTGTTTCCAAGTGGAACTTATTCATAATTATTGTTTTATTCAAACTCTTGCAGGCATAAAGAATCGTAAAAAAGATAAGATAGTGTATGATGATCAGACGGGTTCATGGAAACGTCGCCATGGTTATGATCGTGCAAATGATGAGGAGAACATACCCATAATTGAGGCCAAGATGACTGATGGTAGTATTTTATGATGATTTGTTCTACTAGCTATTTATTCTTTTTGTGAACATACCCATAATTGAGGCCAAGATGACTAGAAAGTTATGTTTTTGCTTTTTGTGAACTTGATTTGCAAATTTGCACAAATCTGCAACATCCAGATAGCCAACTGATGATCCAATTTAATTACTGGTTTCTCTTTGTTCTTAAGACACGTAAAATTAGCTGAAATGGCTGTTAAGAGCATGCTTGATTTGTCTTGCAGAGCCCGGGGTGGATCCATTTGCTGCAAGGCGAGCCAATAAGAAAAACCGAGTTGAAAAACAAGAAAGGAATCAGTTACAGAATCTGAAGCAGGCTGCAAAAGTTGGCGCTCTACCAAGGTTTTACCTCTCAAGACAGTTTTGGTTATTGAATATGATATAAGTTGTACCCCACTTCGTTGTTTATACACGAATTTCTTCAACTTTTTAACTTAGATCAACGTTTTCCAAAAAATGTTTTTGTCAACTACTCCATTTAAGACATCATCCATGCTGTTAGTTGCCCATCTTAGTGTTCATCTTCAATCATGTCTTCCTTTCCTCCCCGTCACAATCTGTTCTTGATAGCATAAAATTCACTGTATCAGTCACGTTCAACTAGCTGCCACTGCTTTGCCTATAACTGGAACTCAAGCTGCACCAAAGAAAATTACCAAGGATGAACTTGGAAACGTAGCTGGAATGGCAGCAACTTCAACAGCCAGTGGTGGAAAATTTGACAAGAAGTTAGCAGGAGAAAAACCTGCGAAACATCAAGGAAAATATCGCAAGGTTAACTGAACCAGCCTGTTGATGTACATTTTTGCTTCAGTTTACTTTATAATTATCGTAAAAAATTGTGATGCATATTTTGTGTTTGGATGCAGTTTCTGCCTGTTGTGGAGGGAACAGGGATAGGCTCTCAAGAAAGAGAGCAAACTGAGAAAGTTCTTAACAGATTAATTTCCAAGAATTCACACGAGATTCTCAATATTAATAAGGTTTGACTGCTAAACTACACATTACATTTTAAAGGATGAACAAATGCATATATCTTATTGTTTGATGCTCCATGAAACTCGTGGTTTTAAAATGATTATTCGTACCCACGTGGCCTAAAACCACCGCTCTTTTTATTTTCTTGTAAATTCGTTTAGGTTGTTGCCATTTTTTTAGTTCAGCAGCGGGAAAGAGAATTCAAACCTTTTAACTTTTGGCTGGGACATAATGTTTTAGCTTGTTGAGTGAGTTATACTCGTATTGATTGCCTTGTATATTATATGATTCAACATAATTTCTAATGGACCTTGTGATGTAAATAGATTACGACATGATGGATATTCGTGTATATGATTTATCATGAAGTGAAGCTCATTACTTCTGAGAAACAAATTGATTTTGTAATCACATTAAATTCTAAGCCTATTTTGGATTCCTCATCTTGATTTTCAGGCTGTCAACATGTACAATGTGAAAAAAGAAAAGAAACAAAGAAACCAACGAGGGAAGTCTTCATCAATGTCAAGCAACAAGTTGAAACCAAATAAGAAACTACAGAAGAAGCCATTGAAGAAGGGATCTTCAAAGAATGGCAAGGCAAAATGAACGAATTTTCGCAATAGATCATGAGCTCTTGTAGAGGTGCGCGTGTTAGATTACATTCTTCTTGACATTCTGAATGTACCATTATTATCATTATTTAGTAGTGAAGAAAATTTTGAAATTCTGTTTGTTTTCTCTATGAGAGTCCTTTTGATGGCATATGTTGCATAAAAATCATTTAAA mRNA sequence ATGGAGATGGAGAATCAACAACCGTTTCAGATCGACCTGGGGAATCTAATGGCGTTCAATCCTCACCATAAATTTCCTTCTCTCTCTTCCTCCAGGGAGGATCTAGTTAGTGAATGTCTGCAAAAGGGCGCAGAGTTAGCTCAATTTATTGCTAATGATCTTTTCAACCTGCCTTCAACTGAAGACAGAGATGGTCCGCTCGTGAGGTTGCCTCCACCTTCTACACGATTGCCGAGAGAGAAACCTTTGCCAAAGCCCAAACCTCCTACAAAATGGGAGCTTTTTGCCAAAAAAAGAGGCATAAAGAATCGTAAAAAAGATAAGATAGTGTATGATGATCAGACGGGTTCATGGAAACGTCGCCATGGTTATGATCGTGCAAATGATGAGGAGAACATACCCATAATTGAGGCCAAGATGACTGATGAGCCCGGGGTGGATCCATTTGCTGCAAGGCGAGCCAATAAGAAAAACCGAGTTGAAAAACAAGAAAGGAATCAGTTACAGAATCTGAAGCAGGCTGCAAAAGTTGGCGCTCTACCAAGTCACGTTCAACTAGCTGCCACTGCTTTGCCTATAACTGGAACTCAAGCTGCACCAAAGAAAATTACCAAGGATGAACTTGGAAACGTAGCTGGAATGGCAGCAACTTCAACAGCCAGTGGTGGAAAATTTGACAAGAAGTTAGCAGGAGAAAAACCTGCGAAACATCAAGGAAAATATCGCAAGTTTCTGCCTGTTGTGGAGGGAACAGGGATAGGCTCTCAAGAAAGAGAGCAAACTGAGAAAGTTCTTAACAGATTAATTTCCAAGAATTCACACGAGATTCTCAATATTAATAAGGCTGTCAACATGTACAATGTGAAAAAAGAAAAGAAACAAAGAAACCAACGAGGGAAGTCTTCATCAATGTCAAGCAACAAGTTGAAACCAAATAAGAAACTACAGAAGAAGCCATTGAAGAAGGGATCTTCAAAGAATGGCAAGGCAAAATGAACGAATTTTCGCAATAGATCATGAGCTCTTGTAGAGGTGCGCGTGTTAGATTACATTCTTCTTGACATTCTGAATGTACCATTATTATCATTATTTAGTAGTGAAGAAAATTTTGAAATTCTGTTTGTTTTCTCTATGAGAGTCCTTTTGATGGCATATGTTGCATAAAAATCATTTAAA Coding sequence (CDS) ATGGAGATGGAGAATCAACAACCGTTTCAGATCGACCTGGGGAATCTAATGGCGTTCAATCCTCACCATAAATTTCCTTCTCTCTCTTCCTCCAGGGAGGATCTAGTTAGTGAATGTCTGCAAAAGGGCGCAGAGTTAGCTCAATTTATTGCTAATGATCTTTTCAACCTGCCTTCAACTGAAGACAGAGATGGTCCGCTCGTGAGGTTGCCTCCACCTTCTACACGATTGCCGAGAGAGAAACCTTTGCCAAAGCCCAAACCTCCTACAAAATGGGAGCTTTTTGCCAAAAAAAGAGGCATAAAGAATCGTAAAAAAGATAAGATAGTGTATGATGATCAGACGGGTTCATGGAAACGTCGCCATGGTTATGATCGTGCAAATGATGAGGAGAACATACCCATAATTGAGGCCAAGATGACTGATGAGCCCGGGGTGGATCCATTTGCTGCAAGGCGAGCCAATAAGAAAAACCGAGTTGAAAAACAAGAAAGGAATCAGTTACAGAATCTGAAGCAGGCTGCAAAAGTTGGCGCTCTACCAAGTCACGTTCAACTAGCTGCCACTGCTTTGCCTATAACTGGAACTCAAGCTGCACCAAAGAAAATTACCAAGGATGAACTTGGAAACGTAGCTGGAATGGCAGCAACTTCAACAGCCAGTGGTGGAAAATTTGACAAGAAGTTAGCAGGAGAAAAACCTGCGAAACATCAAGGAAAATATCGCAAGTTTCTGCCTGTTGTGGAGGGAACAGGGATAGGCTCTCAAGAAAGAGAGCAAACTGAGAAAGTTCTTAACAGATTAATTTCCAAGAATTCACACGAGATTCTCAATATTAATAAGGCTGTCAACATGTACAATGTGAAAAAAGAAAAGAAACAAAGAAACCAACGAGGGAAGTCTTCATCAATGTCAAGCAACAAGTTGAAACCAAATAAGAAACTACAGAAGAAGCCATTGAAGAAGGGATCTTCAAAGAATGGCAAGGCAAAATGA Protein sequence MEMENQQPFQIDLGNLMAFNPHHKFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTEDRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRRHGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKNRVEKQERNQLQNLKQAAKVGALPSHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKYRKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYNVKKEKKQRNQRGKSSSMSSNKLKPNKKLQKKPLKKGSSKNGKAK
Homology
BLAST of CmaCh11G008250 vs. ExPASy Swiss-Prot
Match: Q9SH88 (Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana OX=3702 GN=At2g37990 PE=2 SV=2) HSP 1 Score: 404.8 bits (1039), Expect = 9.2e-112 Identity = 211/321 (65.73%), Postives = 259/321 (80.69%), Query Frame = 0
Query: 2 EMENQQPFQIDLGNLMAFNPHHKFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTE 61
EME +Q +Q+D+GNL+AFNP+H+FPS SSR +LV E L +G +L Q IAN LFN PSTE
Sbjct: 4 EMETEQIYQVDVGNLLAFNPNHRFPSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTE 63
Query: 62 DRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRR 121
DGP+V+LPPP+T+LPREK +P+PKPPTKWE FA K+GI+ RKK+K+V+D+QT +KRR
Sbjct: 64 TNDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRR 123
Query: 122 HGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKNRVEKQERNQLQNLKQAAKVGALP 181
HGYDR ND+ ++PIIEAK +DEPGVDPFA R +KK RV KQE+N+LQNLK A K GALP
Sbjct: 124 HGYDRVNDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALP 183
Query: 182 SHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKY 241
SHVQLAAT+LPI+GT+A PKKI KDELG+VAG+AATSTASGGKFDKKL GEKP K QGK+
Sbjct: 184 SHVQLAATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPPKKQGKH 243
Query: 242 RKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYNVKKEKKQRNQRGKS 301
K+LPVV G G + E+EQT VL+++ SK+SHEILN+ KA+NMYNVKKEKK+
Sbjct: 244 HKYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKKK------- 303
Query: 302 SSMSSNKLKPNKKLQKKPLKK 323
S S+KLKP K + KKP K
Sbjct: 304 -SGRSDKLKPKKDITKKPANK 316
BLAST of CmaCh11G008250 vs. ExPASy Swiss-Prot
Match: Q2KIH4 (Ribosome biogenesis regulatory protein homolog OS=Bos taurus OX=9913 GN=RRS1 PE=2 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 2.9e-33 Identity = 109/301 (36.21%), Postives = 165/301 (54.82%), Query Frame = 0
Query: 10 QIDLGNLMAF--NPHHKFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTEDRDGPL 69
+ DLGNL+A NP ++E +E + Q + N L+ LP+ + +
Sbjct: 33 EFDLGNLLASDRNPPTGLRHAGPTQE---AELRALARDNTQLLINQLWQLPTERVEEALV 92
Query: 70 VRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRRHGYDRA 129
RLP PSTRLPREKP+P+P+P T+W+ FA+ +GI+ +KK +V+D+ +G W+RR GY RA
Sbjct: 93 ARLPEPSTRLPREKPVPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGRWRRRWGYQRA 152
Query: 130 NDEENIPIIEAKMTDEPGVDPFAARRANKKNRVEKQERNQLQNLKQAAKVGALPSHVQLA 189
D+ +IE +P D FA R KK RV K E N+L+NL +A K+ LPS
Sbjct: 153 RDDTKEWLIEVPGNADPMEDQFAKRIQAKKERVAKNELNRLRNLARAHKM-QLPS----- 212
Query: 190 ATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKYRKFLPV 249
A + TG Q +K+ELG +A STAS G+F ++L EK + GK RKF P+
Sbjct: 213 AAGMHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKKRKFQPL 272
Query: 250 VEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYNVKKEKKQRNQRGKSSSMSSN 309
G + ER+ ++L + SK ++I +A N ++++++ +R K S
Sbjct: 273 F---GDFAAERKSQLEMLRVMNSKKPQ--MDITRATNKQMREEDQEEAAKRRKMSQKGKR 313
BLAST of CmaCh11G008250 vs. ExPASy Swiss-Prot
Match: Q15050 (Ribosome biogenesis regulatory protein homolog OS=Homo sapiens OX=9606 GN=RRS1 PE=1 SV=2) HSP 1 Score: 139.4 bits (350), Expect = 7.2e-32 Identity = 113/322 (35.09%), Postives = 172/322 (53.42%), Query Frame = 0
Query: 10 QIDLGNLMAFNPHHKFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTEDRDGPLVR 69
Q DLGNL+A + + L + +E + Q + N L+ LP+ + + R
Sbjct: 33 QFDLGNLLA-SDRNPPTGLRCAGPTPEAELQALARDNTQLLINQLWQLPTERVEEAIVAR 92
Query: 70 LPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRRHGYDRAND 129
LP P+TRLPREKPLP+P+P T+W+ FA+ +GI+ +KK +V+D+ +G W+RR GY RA D
Sbjct: 93 LPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRRRWGYQRARD 152
Query: 130 EENIPIIEAKMTDEPGVDPFAARRANKKNRVEKQERNQLQNLKQAAKVGALPSHVQLAAT 189
+ +IE +P D FA R KK RV K E N+L+NL +A K+ LPS A
Sbjct: 153 DTKEWLIEVPGNADPLEDQFAKRIQAKKERVAKNELNRLRNLARAHKM-QLPS-----AA 212
Query: 190 ALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKYRKFLPVVE 249
L TG Q +K+ELG +A STAS G+F ++L EK + GK RKF P+
Sbjct: 213 GLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKVPRGSGKKRKFQPLF- 272
Query: 250 GTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYNVKKEKKQRNQRGKSSSMSSNK- 309
G + E++ ++L + SK L++ +A N ++++++ +R K S K
Sbjct: 273 --GDFAAEKKNQLELLRVMNSKKPQ--LDVTRATNKQMREEDQEEAAKRRKMSQKGKRKG 332
Query: 310 --LKPNKKLQKKPLKKGSSKNG 329
P K + P +G + G
Sbjct: 333 GRQGPGGKRKGGPPSQGGKRKG 336
BLAST of CmaCh11G008250 vs. ExPASy Swiss-Prot
Match: Q9CYH6 (Ribosome biogenesis regulatory protein homolog OS=Mus musculus OX=10090 GN=Rrs1 PE=1 SV=1) HSP 1 Score: 139.4 bits (350), Expect = 7.2e-32 Identity = 113/324 (34.88%), Postives = 174/324 (53.70%), Query Frame = 0
Query: 10 QIDLGNLMAF--NPHHKFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTEDRDGPL 69
+ DLGNL+A NP S E +E + Q + N L+ LP+ + +
Sbjct: 33 EFDLGNLLASDRNPPTVLRQAGPSPE---AELRALARDNTQLLINQLWRLPTERVEEAVV 92
Query: 70 VRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRRHGYDRA 129
RLP P+TRLPREKPLP+P+P T+W+ FA+ +GI+ +KK +V+D+ +G W+RR GY RA
Sbjct: 93 ARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEASGQWRRRWGYKRA 152
Query: 130 NDEENIPIIEAKMTDEPGVDPFAARRANKKNRVEKQERNQLQNLKQAAKVGALPSHVQLA 189
D+ +IE + +P D FA R KK RV K E N+L+NL +A K+ +PS
Sbjct: 153 RDDTKEWLIEVPGSADPMEDQFAKRTQAKKERVAKNELNRLRNLARAHKM-QMPS----- 212
Query: 190 ATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKYRKFLPV 249
+ L TG Q +K+ELG +A STAS G+F ++L EK + GK RKF P+
Sbjct: 213 SAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKKRKFQPL 272
Query: 250 VEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYNVKKEKKQRNQRGKSSSMSSN 309
G + E++ ++L + SK L++ +A N ++++++ +R K S
Sbjct: 273 F---GDFAAEKKNQLELLRVMNSKKPR--LDVTRATNKQMREEDQEEAAKRRKMSQKGKR 332
Query: 310 K---LKPNKKLQKKPLKKGSSKNG 329
K P+ K + P +G + G
Sbjct: 333 KGGRQGPSGKRKGGPPGQGEKRKG 336
BLAST of CmaCh11G008250 vs. ExPASy Swiss-Prot
Match: A1A5P2 (Ribosome biogenesis regulatory protein homolog OS=Rattus norvegicus OX=10116 GN=Rrs1 PE=2 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 1.6e-31 Identity = 112/324 (34.57%), Postives = 174/324 (53.70%), Query Frame = 0
Query: 10 QIDLGNLMAF--NPHHKFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTEDRDGPL 69
+ DLGNL+A NP S E +E + Q + N L+ LP+ + +
Sbjct: 33 EFDLGNLLASDRNPPTVLRQAGPSPE---AELRALARDNTQLLVNQLWQLPTERVEEAVV 92
Query: 70 VRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRRHGYDRA 129
RLP P+TRLPREKPLP+P+P T+W+ FA+ +GI+ +KK +V+D+ +G W+RR GY RA
Sbjct: 93 ARLPEPATRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDEVSGQWRRRWGYKRA 152
Query: 130 NDEENIPIIEAKMTDEPGVDPFAARRANKKNRVEKQERNQLQNLKQAAKVGALPSHVQLA 189
D+ +IE + +P D FA R KK RV K E N+L+NL +A K+ +PS
Sbjct: 153 RDDTKEWLIEVPGSADPMEDQFAKRIRAKKERVAKNELNRLRNLARAHKM-QMPS----- 212
Query: 190 ATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKYRKFLPV 249
+ L TG Q +K+ELG +A STAS G+F ++L EK + GK RKF P+
Sbjct: 213 SAGLHPTGHQ------SKEELGRAMQVAKVSTASVGRFQERLPKEKAPRGSGKKRKFQPL 272
Query: 250 VEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYNVKKEKKQRNQRGKSSSMSSN 309
G + E++ ++L + SK L++ +A N ++++++ +R K S
Sbjct: 273 F---GDFAAEKKNQLELLRVMNSKKPQ--LDVTRATNKQMREEDQEEAAKRRKMSQKGKK 332
Query: 310 K---LKPNKKLQKKPLKKGSSKNG 329
K P+ + + P +G + G
Sbjct: 333 KGGRQGPSGRRKGGPPSQGEKRKG 336
BLAST of CmaCh11G008250 vs. TAIR 10
Match: AT2G37990.1 (ribosome biogenesis regulatory protein (RRS1) family protein ) HSP 1 Score: 404.8 bits (1039), Expect = 6.5e-113 Identity = 211/321 (65.73%), Postives = 259/321 (80.69%), Query Frame = 0
Query: 2 EMENQQPFQIDLGNLMAFNPHHKFPSLSSSREDLVSECLQKGAELAQFIANDLFNLPSTE 61
EME +Q +Q+D+GNL+AFNP+H+FPS SSR +LV E L +G +L Q IAN LFN PSTE
Sbjct: 4 EMETEQIYQVDVGNLLAFNPNHRFPSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTE 63
Query: 62 DRDGPLVRLPPPSTRLPREKPLPKPKPPTKWELFAKKRGIKNRKKDKIVYDDQTGSWKRR 121
DGP+V+LPPP+T+LPREK +P+PKPPTKWE FA K+GI+ RKK+K+V+D+QT +KRR
Sbjct: 64 TNDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQTNQFKRR 123
Query: 122 HGYDRANDEENIPIIEAKMTDEPGVDPFAARRANKKNRVEKQERNQLQNLKQAAKVGALP 181
HGYDR ND+ ++PIIEAK +DEPGVDPFA R +KK RV KQE+N+LQNLK A K GALP
Sbjct: 124 HGYDRVNDDNDVPIIEAKESDEPGVDPFAKRLDDKKKRVGKQEKNRLQNLKAAEKAGALP 183
Query: 182 SHVQLAATALPITGTQAAPKKITKDELGNVAGMAATSTASGGKFDKKLAGEKPAKHQGKY 241
SHVQLAAT+LPI+GT+A PKKI KDELG+VAG+AATSTASGGKFDKKL GEKP K QGK+
Sbjct: 184 SHVQLAATSLPISGTKAQPKKIGKDELGDVAGLAATSTASGGKFDKKLPGEKPPKKQGKH 243
Query: 242 RKFLPVVEGTGIGSQEREQTEKVLNRLISKNSHEILNINKAVNMYNVKKEKKQRNQRGKS 301
K+LPVV G G + E+EQT VL+++ SK+SHEILN+ KA+NMYNVKKEKK+
Sbjct: 244 HKYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKKK------- 303
Query: 302 SSMSSNKLKPNKKLQKKPLKK 323
S S+KLKP K + KKP K
Sbjct: 304 -SGRSDKLKPKKDITKKPANK 316
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Q9SH88 | 9.2e-112 | 65.73 | Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana OX=3702 G... | [more] |
| Q2KIH4 | 2.9e-33 | 36.21 | Ribosome biogenesis regulatory protein homolog OS=Bos taurus OX=9913 GN=RRS1 PE=... | [more] |
| Q15050 | 7.2e-32 | 35.09 | Ribosome biogenesis regulatory protein homolog OS=Homo sapiens OX=9606 GN=RRS1 P... | [more] |
| Q9CYH6 | 7.2e-32 | 34.88 | Ribosome biogenesis regulatory protein homolog OS=Mus musculus OX=10090 GN=Rrs1 ... | [more] |
| A1A5P2 | 1.6e-31 | 34.57 | Ribosome biogenesis regulatory protein homolog OS=Rattus norvegicus OX=10116 GN=... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT2G37990.1 | 6.5e-113 | 65.73 | ribosome biogenesis regulatory protein (RRS1) family protein | [more] |
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 151..174 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 226..241 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 217..241 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 311..331 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 281..331 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 60..91 |
| None | No IPR available | PANTHER | PTHR17602:SF5 | RIBOSOME BIOGENESIS REGULATORY PROTEIN | coord: 1..320 |
| IPR007023 | Ribosomal biogenesis regulatory protein | PFAM | PF04939 | RRS1 | coord: 8..171
e-value: 7.1E-54
score: 182.1 |
| IPR007023 | Ribosomal biogenesis regulatory protein | PANTHER | PTHR17602 | RIBOSOME BIOGENESIS REGULATORY PROTEIN | coord: 1..320 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0000447 |
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| biological_process |
GO:0042273 |
ribosomal large subunit biogenesis |
| biological_process |
GO:0000055 |
ribosomal large subunit export from nucleus |
| biological_process |
GO:0042254 |
ribosome biogenesis |
| cellular_component |
GO:0005730 |
nucleolus |
| cellular_component |
GO:0030687 |
preribosome, large subunit precursor |
| cellular_component |
GO:0005634 |
nucleus |
|
