CmaCh11G007950 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G007950
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUBA domain-containing protein
LocationCma_Chr11: 3886702 .. 3888696 (+)
RNA-Seq ExpressionCmaCh11G007950
SyntenyCmaCh11G007950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTGTATTGCACATTTCAGAAGGAATTTCCTAGCTGTGGAGATGTCTCCTGCTTCCAAATCTAAACCAAAAGACAAGAAAGTCATCAAAGAACTTCAGAAGCCTACATCAAAGCCGACAGGCCCTGCTGCAGCTGGTAGTAGTAGTGTTCCAGCTAGTGCATATAATCCTCTCTCAGGCACCTTCCATGCACTTGAATCAACAGTATCTGCTTCTTCACCTCTCCATTCCAATGGCCGTTTCAAGAACATAGATGATACAGATGCTCATTCTGGAGTTTTGCTTTCTTCAGCGGCAGAGTATGATACTGTTTCTAACAATGGTAGCTGGTCTGGTGAGTCAGAGGACCATAAAGACAAAAAATCTAACCTGACTGTGCGGCAAGAAACAATTCCAGGGGCAGACATTGACAAACGAGAAAAAATTCGTCAAAAGAATGAGAAGAAGCATCAGCGTCAAAAAGAGAGACGTGCTCAGGAATTACACGAACGCTGTAGTGGCTACCTGATGTCCAGAAAGCTTGAAGCTCTTGCACAGCAATTAGTTGCCATGGGCTTTTCACAAGATCGAGCAACCGTAGCTCTAATGCTAAACGAAGGCAACATAGAGGAGTCAGTTGCATGGCTTTTGGAAGGTGGTGAAGAGACAAGTGATTCTTCGAATCAAAATCTTGGTGGGCAAAACCTTAAACTTGACATATCAGAAGAGCTTGCTCGTATAGCAGACTTGGAATCACAGTTCAAGTGTACAAAACTAGAAGTTGAGAGAGCTATTGTTGCTTCTGAAGGCGATCTGGAGAAGGCAGCCGAATCCTTGAGAGAATTGAAGCTAGATCCGCCTGCTGCTCCTCCTAAGCCCGAAGAAACCGGTGATCCTCCAAGTGCTTTAAGCAGTAAGTTTTCTGGCAATGCTAGTCAAGCCTTATTAAGACCGCAAGCTAAGCCTAATCATCCTTCAATACAACAAAGAAAGGATGAAAAAGATTTTAATTACACAAAAGGAACAATTACAGCTGGTTTGTCTGTAGAATCCATTGGCAAGAGTATACCACAGCCTTTGAGGAATCAGCCGAAGATGGATTGGGGACATTATGAACAAATCACAACAGCTGAGAAAAGGTGGCCAGGTGCGGGAACTAACCCCTTGTCCTTCTCTTTATCATCAACACCCACCCAGTTGTCATCTCCACCAATCAAGAATGAAACTCGTTATTTAACTGTTGGTTCTGAGATTAATAGCTTTCAATCTGGTTCAGTGAGAGAACCAAGTTCAATAGTACAGGGTCGGAATGCATCTTTGCACACGATGATGCAACCGTCGGTTGGAACTATAAGTTCATCGCCGCCTTCTAGTTGGTATACTGCTAATAGCCTTGGATCTATTAAATCGTCCAATGGATTTTTGTCGCAGATTCACAGCTCAAGAAGCTTCAAGCCAAGTGATGTAACCTTAAATCAGACGTATCCTCAAGTTCAGTATCAGCAACAGTTTGTCTCTAGTAACAGCCGTGGGGGCTTCCCTGAAGCCACCCGCACCAATACTTCATGGAGCAGAACAGGTGCATCATCTACCATAGCTGCTGCTTCCTCCCTTGGACTATTTTCAGGAACAAGTTCAACACAATCAGGGGCATCGTCTCCCGTAGATTGGAACACGGGAAGTTCAATGCCACATTTAGATTACTCCGACATAGACTGGTCTGTGGATAAAGGCCTAACTTCGGTCCGACCTGGTGGGTTGTTGCAGGGGCTGAATTCCTATATGCAGAAGAACGCCCATCTTTACGAATCGAACACTGCTCATTTGGTGGATGCTCAGCCGTTCATACCATCGTCGGTGCCTTCTAATTTCAATAGAGTTCCAATGGCTGGATTGCAAAATGGAGTTGCTTCTGAAACATCAGCAACTAATGGTTCTAGAGAGTGGACTTCTCCATTTGAAGGAAAGGATATTTTCAGTTTTCCTAGACAGTTTGTCTTCTCTCCTCCATAA

mRNA sequence

ATGTTGTGTATTGCACATTTCAGAAGGAATTTCCTAGCTGTGGAGATGTCTCCTGCTTCCAAATCTAAACCAAAAGACAAGAAAGTCATCAAAGAACTTCAGAAGCCTACATCAAAGCCGACAGGCCCTGCTGCAGCTGGTAGTAGTAGTGTTCCAGCTAGTGCATATAATCCTCTCTCAGGCACCTTCCATGCACTTGAATCAACAGTATCTGCTTCTTCACCTCTCCATTCCAATGGCCGTTTCAAGAACATAGATGATACAGATGCTCATTCTGGAGTTTTGCTTTCTTCAGCGGCAGAGTATGATACTGTTTCTAACAATGGTAGCTGGTCTGGTGAGTCAGAGGACCATAAAGACAAAAAATCTAACCTGACTGTGCGGCAAGAAACAATTCCAGGGGCAGACATTGACAAACGAGAAAAAATTCGTCAAAAGAATGAGAAGAAGCATCAGCGTCAAAAAGAGAGACGTGCTCAGGAATTACACGAACGCTGTAGTGGCTACCTGATGTCCAGAAAGCTTGAAGCTCTTGCACAGCAATTAGTTGCCATGGGCTTTTCACAAGATCGAGCAACCGTAGCTCTAATGCTAAACGAAGGCAACATAGAGGAGTCAGTTGCATGGCTTTTGGAAGGTGGTGAAGAGACAAGTGATTCTTCGAATCAAAATCTTGGTGGGCAAAACCTTAAACTTGACATATCAGAAGAGCTTGCTCGTATAGCAGACTTGGAATCACAGTTCAAGTGTACAAAACTAGAAGTTGAGAGAGCTATTGTTGCTTCTGAAGGCGATCTGGAGAAGGCAGCCGAATCCTTGAGAGAATTGAAGCTAGATCCGCCTGCTGCTCCTCCTAAGCCCGAAGAAACCGGTGATCCTCCAAGTGCTTTAAGCAGTAAGTTTTCTGGCAATGCTAGTCAAGCCTTATTAAGACCGCAAGCTAAGCCTAATCATCCTTCAATACAACAAAGAAAGGATGAAAAAGATTTTAATTACACAAAAGGAACAATTACAGCTGGTTTGTCTGTAGAATCCATTGGCAAGAGTATACCACAGCCTTTGAGGAATCAGCCGAAGATGGATTGGGGACATTATGAACAAATCACAACAGCTGAGAAAAGGTGGCCAGGTGCGGGAACTAACCCCTTGTCCTTCTCTTTATCATCAACACCCACCCAGTTGTCATCTCCACCAATCAAGAATGAAACTCGTTATTTAACTGTTGGTTCTGAGATTAATAGCTTTCAATCTGGTTCAGTGAGAGAACCAAGTTCAATAGTACAGGGTCGGAATGCATCTTTGCACACGATGATGCAACCGTCGGTTGGAACTATAAGTTCATCGCCGCCTTCTAGTTGGTATACTGCTAATAGCCTTGGATCTATTAAATCGTCCAATGGATTTTTGTCGCAGATTCACAGCTCAAGAAGCTTCAAGCCAAGTGATGTAACCTTAAATCAGACGTATCCTCAAGTTCAGTATCAGCAACAGTTTGTCTCTAGTAACAGCCGTGGGGGCTTCCCTGAAGCCACCCGCACCAATACTTCATGGAGCAGAACAGGTGCATCATCTACCATAGCTGCTGCTTCCTCCCTTGGACTATTTTCAGGAACAAGTTCAACACAATCAGGGGCATCGTCTCCCGTAGATTGGAACACGGGAAGTTCAATGCCACATTTAGATTACTCCGACATAGACTGGTCTGTGGATAAAGGCCTAACTTCGGTCCGACCTGGTGGGTTGTTGCAGGGGCTGAATTCCTATATGCAGAAGAACGCCCATCTTTACGAATCGAACACTGCTCATTTGGTGGATGCTCAGCCGTTCATACCATCGTCGGTGCCTTCTAATTTCAATAGAGTTCCAATGGCTGGATTGCAAAATGGAGTTGCTTCTGAAACATCAGCAACTAATGGTTCTAGAGAGTGGACTTCTCCATTTGAAGGAAAGGATATTTTCAGTTTTCCTAGACAGTTTGTCTTCTCTCCTCCATAA

Coding sequence (CDS)

ATGTTGTGTATTGCACATTTCAGAAGGAATTTCCTAGCTGTGGAGATGTCTCCTGCTTCCAAATCTAAACCAAAAGACAAGAAAGTCATCAAAGAACTTCAGAAGCCTACATCAAAGCCGACAGGCCCTGCTGCAGCTGGTAGTAGTAGTGTTCCAGCTAGTGCATATAATCCTCTCTCAGGCACCTTCCATGCACTTGAATCAACAGTATCTGCTTCTTCACCTCTCCATTCCAATGGCCGTTTCAAGAACATAGATGATACAGATGCTCATTCTGGAGTTTTGCTTTCTTCAGCGGCAGAGTATGATACTGTTTCTAACAATGGTAGCTGGTCTGGTGAGTCAGAGGACCATAAAGACAAAAAATCTAACCTGACTGTGCGGCAAGAAACAATTCCAGGGGCAGACATTGACAAACGAGAAAAAATTCGTCAAAAGAATGAGAAGAAGCATCAGCGTCAAAAAGAGAGACGTGCTCAGGAATTACACGAACGCTGTAGTGGCTACCTGATGTCCAGAAAGCTTGAAGCTCTTGCACAGCAATTAGTTGCCATGGGCTTTTCACAAGATCGAGCAACCGTAGCTCTAATGCTAAACGAAGGCAACATAGAGGAGTCAGTTGCATGGCTTTTGGAAGGTGGTGAAGAGACAAGTGATTCTTCGAATCAAAATCTTGGTGGGCAAAACCTTAAACTTGACATATCAGAAGAGCTTGCTCGTATAGCAGACTTGGAATCACAGTTCAAGTGTACAAAACTAGAAGTTGAGAGAGCTATTGTTGCTTCTGAAGGCGATCTGGAGAAGGCAGCCGAATCCTTGAGAGAATTGAAGCTAGATCCGCCTGCTGCTCCTCCTAAGCCCGAAGAAACCGGTGATCCTCCAAGTGCTTTAAGCAGTAAGTTTTCTGGCAATGCTAGTCAAGCCTTATTAAGACCGCAAGCTAAGCCTAATCATCCTTCAATACAACAAAGAAAGGATGAAAAAGATTTTAATTACACAAAAGGAACAATTACAGCTGGTTTGTCTGTAGAATCCATTGGCAAGAGTATACCACAGCCTTTGAGGAATCAGCCGAAGATGGATTGGGGACATTATGAACAAATCACAACAGCTGAGAAAAGGTGGCCAGGTGCGGGAACTAACCCCTTGTCCTTCTCTTTATCATCAACACCCACCCAGTTGTCATCTCCACCAATCAAGAATGAAACTCGTTATTTAACTGTTGGTTCTGAGATTAATAGCTTTCAATCTGGTTCAGTGAGAGAACCAAGTTCAATAGTACAGGGTCGGAATGCATCTTTGCACACGATGATGCAACCGTCGGTTGGAACTATAAGTTCATCGCCGCCTTCTAGTTGGTATACTGCTAATAGCCTTGGATCTATTAAATCGTCCAATGGATTTTTGTCGCAGATTCACAGCTCAAGAAGCTTCAAGCCAAGTGATGTAACCTTAAATCAGACGTATCCTCAAGTTCAGTATCAGCAACAGTTTGTCTCTAGTAACAGCCGTGGGGGCTTCCCTGAAGCCACCCGCACCAATACTTCATGGAGCAGAACAGGTGCATCATCTACCATAGCTGCTGCTTCCTCCCTTGGACTATTTTCAGGAACAAGTTCAACACAATCAGGGGCATCGTCTCCCGTAGATTGGAACACGGGAAGTTCAATGCCACATTTAGATTACTCCGACATAGACTGGTCTGTGGATAAAGGCCTAACTTCGGTCCGACCTGGTGGGTTGTTGCAGGGGCTGAATTCCTATATGCAGAAGAACGCCCATCTTTACGAATCGAACACTGCTCATTTGGTGGATGCTCAGCCGTTCATACCATCGTCGGTGCCTTCTAATTTCAATAGAGTTCCAATGGCTGGATTGCAAAATGGAGTTGCTTCTGAAACATCAGCAACTAATGGTTCTAGAGAGTGGACTTCTCCATTTGAAGGAAAGGATATTTTCAGTTTTCCTAGACAGTTTGTCTTCTCTCCTCCATAA

Protein sequence

MLCIAHFRRNFLAVEMSPASKSKPKDKKVIKELQKPTSKPTGPAAAGSSSVPASAYNPLSGTFHALESTVSASSPLHSNGRFKNIDDTDAHSGVLLSSAAEYDTVSNNGSWSGESEDHKDKKSNLTVRQETIPGADIDKREKIRQKNEKKHQRQKERRAQELHERCSGYLMSRKLEALAQQLVAMGFSQDRATVALMLNEGNIEESVAWLLEGGEETSDSSNQNLGGQNLKLDISEELARIADLESQFKCTKLEVERAIVASEGDLEKAAESLRELKLDPPAAPPKPEETGDPPSALSSKFSGNASQALLRPQAKPNHPSIQQRKDEKDFNYTKGTITAGLSVESIGKSIPQPLRNQPKMDWGHYEQITTAEKRWPGAGTNPLSFSLSSTPTQLSSPPIKNETRYLTVGSEINSFQSGSVREPSSIVQGRNASLHTMMQPSVGTISSSPPSSWYTANSLGSIKSSNGFLSQIHSSRSFKPSDVTLNQTYPQVQYQQQFVSSNSRGGFPEATRTNTSWSRTGASSTIAAASSLGLFSGTSSTQSGASSPVDWNTGSSMPHLDYSDIDWSVDKGLTSVRPGGLLQGLNSYMQKNAHLYESNTAHLVDAQPFIPSSVPSNFNRVPMAGLQNGVASETSATNGSREWTSPFEGKDIFSFPRQFVFSPP
Homology
BLAST of CmaCh11G007950 vs. TAIR 10
Match: AT2G26920.1 (Ubiquitin-associated/translation elongation factor EF1B protein )

HSP 1 Score: 422.9 bits (1086), Expect = 4.6e-118
Identity = 303/665 (45.56%), Postives = 406/665 (61.05%), Query Frame = 0

Query: 15  EMSPASKSKPKDKKVIKELQKPTSKPTGPAAAGSSSVPASAYNPLSGTFHALES-TVSAS 74
           EMSPA+KSK KDKK  KE QK + KP+  +  G+SS+ AS YNPL GTF AL+S ++++ 
Sbjct: 5   EMSPATKSKSKDKKTGKEAQKASPKPS-LSVNGNSSLAASGYNPLLGTFQALDSVSIASI 64

Query: 75  SPLHSNGRFKNIDDTDAHSGVLLSSAAEYDTVSNNGSWSGESEDHKDKKSNLTVRQETIP 134
           SPL  + RF++ID+ D        +  E D+VSNNGS SGESEDHK+K +NL ++QE IP
Sbjct: 65  SPLQYS-RFRSIDEADV-------NGIESDSVSNNGSCSGESEDHKEKTTNLPLKQEVIP 124

Query: 135 GADIDKREKIRQKNEKKHQRQKERRAQELHERCSGYLMSRKLEALAQQLVAMGFSQDRAT 194
           GAD DKREK+RQKNE+KHQRQKERRAQEL+E+CS YL+SRKLEA  QQ+VAMG SQ+ AT
Sbjct: 125 GADNDKREKVRQKNERKHQRQKERRAQELNEKCSTYLISRKLEARTQQIVAMGISQEHAT 184

Query: 195 VALMLNEGNIEESVAWLLEGGEETSDSSNQNLGGQNLKLDISEELARIADLESQFKCTKL 254
            ALM+N+G +EESV WL +  EE  +  +    G NLK+DI+EELARI  +E Q KCT+ 
Sbjct: 185 TALMMNDGKVEESVHWLFDRLEEEIEKQSIQSPG-NLKIDITEELARITKMELQLKCTRQ 244

Query: 255 EVERAIVASEGDLEKAAESLRELKLDPPAAPPKPEETGDPPSALSSK-FSGNASQALLRP 314
           E+ERA+V +EGDL++A E L+  K +  + P K EE GDP +  + K   G   Q     
Sbjct: 245 EIERAVVQAEGDLDRAEEVLKGTKYEEFSVPVKQEECGDPLTPSNGKLIVGIGYQNSDVE 304

Query: 315 QAKPNHPSIQQRKDEKDFNYTKGTITAGLSVESIGKSIPQPL-RNQPKMDWGHYEQ-ITT 374
           +++   P +   +D+K+FNYTK   T     ES+ K + QP+ R + K+DW   +Q    
Sbjct: 305 RSEIPSPGLHPTRDDKNFNYTKSPST----TESVNKMLAQPMKRPELKLDWPKPQQSAAL 364

Query: 375 AEKRW-PGAGTNP-LSFSLSSTPTQLSSPPIKNETRYLTVGSEINSFQSGSVREPS--SI 434
           A+KRW P  G  P  S+SL S+P+    P ++ E RYL  G+E  +FQ    +  +  S+
Sbjct: 365 ADKRWPPTTGQVPSASYSLPSSPSPSPQPAVRVEARYLASGNEFKNFQQQQQQPANRESV 424

Query: 435 VQGRNASLHTMMQPSVGTISSSPPSSWYTANSLGSIKSSNGFLS--QIHSSRSFKPSDVT 494
           +  R      +  P   +  S+PP+SW+ A S+  I  SNGF+    I S+RS  P+ + 
Sbjct: 425 MVMRQRPQVVITNPVPTSSMSAPPTSWHPAASI-EIMKSNGFMQTHNIPSARSPSPNHLN 484

Query: 495 LNQTYPQVQYQQQ--FVSSNSRGGFPEATRTN-TSWSRTGASS-TIAAASSLGLFSGTSS 554
            NQ Y Q+QYQ Q  F ++N         R N   W+R  ASS  I+AASSLGLFS   S
Sbjct: 485 PNQVYQQLQYQNQKRFTNNNQVDPHGSMARGNGGQWTRNTASSPPISAASSLGLFSAVGS 544

Query: 555 T-QSGASSPVDWNTGSSMPHLDYSDIDWSVDKGLT-SVRPGGLLQGLNSYMQ---KNAHL 614
              SGASSP+DW +G S   +DY++IDWS+D+ L+ + R  G   GL S  Q   +N + 
Sbjct: 545 AGTSGASSPIDWISGGS---VDYTNIDWSLDQSLSQNSRVNGNWSGLKSSSQIYDENMNR 604

Query: 615 YESNTAHLVDAQPFIPSSVPSNFNRVPMAGLQNGVASETSATNGSREWTSPFEGKDIFSF 661
           Y  N +              +N N V M     GV  ET     S +WTSPFEGKDIFS 
Sbjct: 605 YSLNGS---------MGGRLNNSNGVSMENSGAGVIVETQQAATSPDWTSPFEGKDIFSL 642

BLAST of CmaCh11G007950 vs. TAIR 10
Match: AT5G12120.1 (Ubiquitin-associated/translation elongation factor EF1B protein )

HSP 1 Score: 385.6 bits (989), Expect = 8.2e-107
Identity = 289/672 (43.01%), Postives = 387/672 (57.59%), Query Frame = 0

Query: 16  MSPASKSKPKDKKVIKELQKPTSKPTGPAAAGSSSVPASAYNPLSGTFHALES-TVSASS 75
           MS ASK K +DKKV+ + QK  SK +G  + G SSV    YNPL GTF  +ES + + SS
Sbjct: 1   MSSASKMKSRDKKVMNDSQKTPSKASG--SMGGSSVVVGGYNPLLGTFQTIESLSATGSS 60

Query: 76  PLHSNGRFKNIDDTDAHSGVLLSSAAEYDTVSNNGSWSGESEDHKDK--KSNLTVRQETI 135
            LH+NGRF++ID++D       S+ A+ D+VSNNGSWSGESEDHK+K   +++  +QE I
Sbjct: 61  SLHNNGRFRHIDESD-------STGADCDSVSNNGSWSGESEDHKEKVPSTSIAAKQEII 120

Query: 136 PGADIDKREKIRQKNEKKHQRQKERRAQELHERCSGYLMSRKLEALAQQLVAMGFSQDRA 195
           PGAD DKR+K+R KNE+KHQRQKE+RAQELHERC  YLMSRKLE  AQ +++MG   +RA
Sbjct: 121 PGADNDKRDKMRLKNERKHQRQKEKRAQELHERCCQYLMSRKLEVHAQLIISMGIPHERA 180

Query: 196 TVALMLNEGNIEESVAWLL-EGGEETSDSSNQNLGGQNLKLDISEELARIADLESQFKCT 255
           T ALMLNEG IEES+ WL  +GG + +D       G NLKLDIS+EL RI +LE+++KCT
Sbjct: 181 TYALMLNEGKIEESINWLFDDGGAKVADKKLDPTSG-NLKLDISQELGRILELETKYKCT 240

Query: 256 KLEVERAIVASEGDLEKAAESLRELKLDPPAAPPKPEETGDPPSALSSKFSGNASQALLR 315
           K +VERA+V +EGD+EKA E+LR  K D   A  KPE+  D  S  +SK     +     
Sbjct: 241 KQDVERAVVTAEGDIEKAEEALRRQKQDQSTASRKPEDISDSTSVNNSKVPSVLTSQNTV 300

Query: 316 PQAKPN---HPS-IQQRKDEKDFNYTKGTITAGLSVESIGKSIPQPLRNQPKMDWGHYEQ 375
            Q +PN   +P+  ++  D K+  Y +G  ++ +S ES  +S+    R   K+ W   +Q
Sbjct: 301 GQLQPNSGMYPAGREEALDRKNLGYPRG--SSYISGESENQSVNSLERIHMKLQWMKLQQ 360

Query: 376 ITTAE--KRWPGAGTNPLSFSLSSTPTQLSSPPIKNETRYLT-VGSEINSFQSGSVREPS 435
               E  KR P   T PLS S               ET Y+T +G +    Q   +REP 
Sbjct: 361 NAPLEENKRIPYQQT-PLSRS-------------TEETHYVTALGDQFKRLQQQDMREPV 420

Query: 436 SIV------QGRNASLHTMMQPSVGTISSS------PPSSWYTANSLGSIKSSNGFLSQI 495
            ++      Q R+ S +T + P V T+++S        S W+ AN       SNG+L   
Sbjct: 421 MVMQQQQQQQQRSQSANTNVLP-VSTMNASFTGAAAAGSGWHPANR-SEAAQSNGYL--- 480

Query: 496 HSSRSFKPSDVTLNQTYPQVQYQQQFVSSNSRGGFPEATRTNTSWSRTGASSTIAAASSL 555
             SRS  P+D+  N  Y Q+QYQQ     N+ G            + + A   +A A+SL
Sbjct: 481 -PSRSLPPNDLNSNLMYQQLQYQQYQGQVNNNG---------HRMAGSSAPPAVAPAASL 540

Query: 556 GLFSGTSSTQSGASSPVDWNTGSSMPHLDYSDIDWSVDKGLTSVRPGGLLQGLNSYMQKN 615
           GLFSG  S    +SS +DWNT  S+ HLDY++IDWS+DKGL  VRP       +S     
Sbjct: 541 GLFSGFGSLAGSSSSGLDWNTDGSLGHLDYNNIDWSLDKGLACVRPSQQYVAASSPYSAA 600

Query: 616 AHLYESNTAHLVDAQPFIPSSVPSNFNRVPMAGLQNGVASETSATNGSREWTSPFEGKDI 665
           +  YE   AH+        + + +N N +   G+  GV       NG REWTSPFEGKD+
Sbjct: 601 SSPYE---AHMNGR-----TRMMTNGNGM---GVAMGVQEAALVGNG-REWTSPFEGKDL 617

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT2G26920.14.6e-11845.56Ubiquitin-associated/translation elongation factor EF1B protein [more]
AT5G12120.18.2e-10743.01Ubiquitin-associated/translation elongation factor EF1B protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 259..279
NoneNo IPR availableGENE3D1.10.8.10coord: 135..225
e-value: 1.3E-10
score: 42.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 295..319
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 278..332
NoneNo IPR availablePANTHERPTHR35294UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B PROTEINcoord: 16..663
IPR015940Ubiquitin-associated domainSMARTSM00165uba_6coord: 237..275
e-value: 26.0
score: 3.4
coord: 175..212
e-value: 0.0011
score: 28.3
IPR015940Ubiquitin-associated domainPROSITEPS50030UBAcoord: 161..213
score: 11.75169
IPR009060UBA-like superfamilySUPERFAMILY46934UBA-likecoord: 176..218

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G007950.1CmaCh11G007950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006414 translational elongation
molecular_function GO:0005515 protein binding
molecular_function GO:0003746 translation elongation factor activity