CmaCh11G007340 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G007340
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionRING-box protein
LocationCma_Chr11: 3592864 .. 3594313 (-)
RNA-Seq ExpressionCmaCh11G007340
SyntenyCmaCh11G007340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAAAACTACGATATTCTTTTTCACTTCCCGGGTTTCTTCTACGCCGCTGACCGGAGAACTGACGCTCTGCGGTCGAGGTTTCAGCCATGGCTACGCTGGATTCGGATGTGCCTATGGTTCCCGCTGGTGAGGCTTCGAGTAGTGCTGGTCCTTCATCCTCCAAGAAACCTAAGCGATTTGAGATCAAGAAGTGGAATGCTGTCGCTCTTTGGGCTTGGGGTACTTTCAAACCTTAATTTCGACTTTTACGGTTTCTTGTAGAGATATGTTGCAGTAGTTTGGACGTTTCTTAATGATTATTTTAACGTAATTTGTAATTTACTTGTGCAGATATTGTTGTCGATAATTGTGCTATTTGTAGGAATCACATAATGGATCTCTGTAAGTTGAAAGAGTTTCTGGAGTTCTAAGTGTTCTTTAATTCTAGATGTGGTTTTGGATGTTGATTTGATGTTTCTTACTGTTGTGTGTCCCGATTGGTTTGGTGTTTAGGCATTGAATGTCAGGCGAATCAGGCGAGTGCCACTAGTGAGGAATGTACTGTCGCTTGGGGTATGCTATTACGCCTCTTTTCTGAAACCCTAGCTTTTGTTCTTGTTTCCTTGTCTTACCTTTCTTATGCTGGTAAATTTGATCACTTTGTCTTATGGTGGTTGTGCAAAGCAGCCTTGAGATATCTCGGTGACTGAAAAATTATCTTAAGCTACTTATTTTTCTTGATCACACTGCCAAACATTAACAACTCTCTTGTTGAATGGACCATGCTTTTCTTTGTTTTATGTTGTTCATGTAAGCTATTTTAAATTCTAAAAGTTTCAGATCCATCGGGGATTTTCATGGTGGTTCGTCATTTGATCTCGTGTCCGCAGTCCTTTGGATGCATGGTTAAACCATAAATTTGTTTGAGTCCCTTTTGATAATCTCTCTTTCCTTTAGGGATTAACTCTTTTCTTTACCTCAATGCTTTGGTTTTGCACTTATTAAGATTGTTATTTGCAGGGGTTTGCAACCATGCTTTTCACTTCCACTGCATTAGTCGTTGGTTGAAGACTCGCCAAGTTTGTCCATTGGGTATACTTTCTCGTATCCTTTAATGTTTTTAACTCACAGAACCGTATGAAAATTCTGCTCATTCTTGATTGAACTTTTGTTATGCTTTTCAGATAACAGCGAATGGGAGTTCCAGAAGTATGGACATTAGGACCTTTGTACGGTTGCAACGTCGGAGGTCAGACAAACTCTACTTGAAATGTTTGTTGGTTGAATATTTGAACCTCTAATGTCCATTCCCAATATCCTGTTATGATTTGCTATATGTATCTTTGTACCTTTTTAAATTTGGAAGTAGTTTAACATAATCTTAGTTGCTTCACTCCAAGCATTGAGCTAAAAGTTTACGTTCCTTCTGTGAACTTCCCTGCTGTTCCCTTTGTGCATGTTTTTGGTTGA

mRNA sequence

ACAAAACTACGATATTCTTTTTCACTTCCCGGGTTTCTTCTACGCCGCTGACCGGAGAACTGACGCTCTGCGGTCGAGGTTTCAGCCATGGCTACGCTGGATTCGGATGTGCCTATGGTTCCCGCTGGTGAGGCTTCGAGTAGTGCTGGTCCTTCATCCTCCAAGAAACCTAAGCGATTTGAGATCAAGAAGTGGAATGCTGTCGCTCTTTGGGCTTGGGATATTGTTGTCGATAATTGTGCTATTTGTAGGAATCACATAATGGATCTCTGCATTGAATGTCAGGCGAATCAGGCGAGTGCCACTAGTGAGGAATGTACTGTCGCTTGGGGGGTTTGCAACCATGCTTTTCACTTCCACTGCATTAGTCGTTGGTTGAAGACTCGCCAAGTTTGTCCATTGGATAACAGCGAATGGGAGTTCCAGAATTGCTTCACTCCAAGCATTGAGCTAAAAGTTTACGTTCCTTCTGTGAACTTCCCTGCTGTTCCCTTTGTGCATGTTTTTGGTTGA

Coding sequence (CDS)

ATGGCTACGCTGGATTCGGATGTGCCTATGGTTCCCGCTGGTGAGGCTTCGAGTAGTGCTGGTCCTTCATCCTCCAAGAAACCTAAGCGATTTGAGATCAAGAAGTGGAATGCTGTCGCTCTTTGGGCTTGGGATATTGTTGTCGATAATTGTGCTATTTGTAGGAATCACATAATGGATCTCTGCATTGAATGTCAGGCGAATCAGGCGAGTGCCACTAGTGAGGAATGTACTGTCGCTTGGGGGGTTTGCAACCATGCTTTTCACTTCCACTGCATTAGTCGTTGGTTGAAGACTCGCCAAGTTTGTCCATTGGATAACAGCGAATGGGAGTTCCAGAATTGCTTCACTCCAAGCATTGAGCTAAAAGTTTACGTTCCTTCTGTGAACTTCCCTGCTGTTCCCTTTGTGCATGTTTTTGGTTGA

Protein sequence

MATLDSDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQNCFTPSIELKVYVPSVNFPAVPFVHVFG
Homology
[Close]
BLAST of CmaCh11G007340 vs. ExPASy Swiss-Prot
Match: Q940X7 (RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.9e-58
Identity = 106/114 (92.98%), Postives = 109/114 (95.61%), Query Frame = 0 

Query: 1   MATLDSDVPMVPAGEASSS-AGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MATLDSDV M+PAGEASSS A  SS+KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQ 114
           DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQ
Sbjct: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQ 114

[Close]
BLAST of CmaCh11G007340 vs. ExPASy Swiss-Prot
Match: Q9M2B0 (RING-box protein 1b OS=Arabidopsis thaliana OX=3702 GN=RBX1B PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.5e-50
Identity = 96/114 (84.21%), Postives = 102/114 (89.47%), Query Frame = 0 

Query: 1   MATLDSDVPMVPAGEASSSAGP-SSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MA+L+SDV M   GE+SS + P SSSK  KRFE+KKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MASLNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQ 114
           DLCIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD  EWEFQ
Sbjct: 61  DLCIECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQ 111

[Close]
BLAST of CmaCh11G007340 vs. ExPASy Swiss-Prot
Match: P62877 (E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens OX=9606 GN=RBX1 PE=1 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.6e-49
Identity = 87/104 (83.65%), Postives = 92/104 (88.46%), Query Frame = 0 

Query: 10  MVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 69
           M  A +  + +G +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 70  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQ 114
           ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQ
Sbjct: 61  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 104

[Close]
BLAST of CmaCh11G007340 vs. ExPASy Swiss-Prot
Match: P62878 (E3 ubiquitin-protein ligase RBX1 OS=Mus musculus OX=10090 GN=Rbx1 PE=1 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.6e-49
Identity = 87/104 (83.65%), Postives = 92/104 (88.46%), Query Frame = 0 

Query: 10  MVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 69
           M  A +  + +G +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 70  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQ 114
           ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQ
Sbjct: 61  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 104

[Close]
BLAST of CmaCh11G007340 vs. ExPASy Swiss-Prot
Match: Q9W5E1 (RING-box protein 1A OS=Drosophila melanogaster OX=7227 GN=Roc1a PE=1 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 4.7e-49
Identity = 87/94 (92.55%), Postives = 89/94 (94.68%), Query Frame = 0 

Query: 22  PSSSKK--PKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 81
           PSSS K   KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV
Sbjct: 11  PSSSSKGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 70

Query: 82  AWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQ 114
           AWGVCNHAFHFHCISRWLKTRQVCPLDN EW+FQ
Sbjct: 71  AWGVCNHAFHFHCISRWLKTRQVCPLDNREWDFQ 104

[Close]
BLAST of CmaCh11G007340 vs. TAIR 10
Match: AT5G20570.1 (RING-box 1 )

HSP 1 Score: 226.5 bits (576), Expect = 1.4e-59
Identity = 106/114 (92.98%), Postives = 109/114 (95.61%), Query Frame = 0 

Query: 1   MATLDSDVPMVPAGEASSS-AGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MATLDSDV M+PAGEASSS A  SS+KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQ 114
           DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQ
Sbjct: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQ 114

[Close]
BLAST of CmaCh11G007340 vs. TAIR 10
Match: AT5G20570.2 (RING-box 1 )

HSP 1 Score: 213.0 bits (541), Expect = 1.5e-55
Identity = 106/138 (76.81%), Postives = 109/138 (78.99%), Query Frame = 0 

Query: 1   MATLDSDVPMVPAGEASSS-AGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MATLDSDV M+PAGEASSS A  SS+KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAW------------------------GVCNHAFHFHCISR 114
           DLCIECQANQASATSEECTVAW                        GVCNHAFHFHCISR
Sbjct: 61  DLCIECQANQASATSEECTVAWEDDQNNCNKYFCILDCSMKDDHLEGVCNHAFHFHCISR 120

[Close]
BLAST of CmaCh11G007340 vs. TAIR 10
Match: AT5G20570.3 (RING-box 1 )

HSP 1 Score: 212.6 bits (540), Expect = 2.0e-55
Identity = 105/132 (79.55%), Postives = 108/132 (81.82%), Query Frame = 0 

Query: 1   MATLDSDVPMVPAGEASSS-AGPSSSKKPKRFEIKKWNAVALWAWD-------------- 60
           MATLDSDV M+PAGEASSS A  SS+KK KRFEIKKW+AVALWAW               
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWGNLENPYTLSSIGLS 60

Query: 61  ----IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ 114
               IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ
Sbjct: 61  MFRYIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ 120

[Close]
BLAST of CmaCh11G007340 vs. TAIR 10
Match: AT3G42830.1 (RING/U-box superfamily protein )

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-51
Identity = 96/114 (84.21%), Postives = 102/114 (89.47%), Query Frame = 0 

Query: 1   MATLDSDVPMVPAGEASSSAGP-SSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MA+L+SDV M   GE+SS + P SSSK  KRFE+KKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MASLNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQ 114
           DLCIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD  EWEFQ
Sbjct: 61  DLCIECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQ 111

[Close]
BLAST of CmaCh11G007340 vs. TAIR 10
Match: AT3G05870.1 (anaphase-promoting complex/cyclosome 11 )

HSP 1 Score: 80.9 bits (198), Expect = 9.2e-16
Identity = 36/90 (40.00%), Postives = 49/90 (54.44%), Query Frame = 0 

Query: 27  KPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH 86
           K K   I  W+AVA W WD   + C ICR      C +C+        ++C + WG CNH
Sbjct: 2   KVKILRILLWHAVASWTWDAQDETCGICRMAFDGCCPDCK-----LPGDDCPLIWGACNH 61

Query: 87  AFHFHCISRWL--KTRQV-CPLDNSEWEFQ 114
           AFH HCI +W+  +T Q  CP+   EW+F+
Sbjct: 62  AFHLHCILKWVNSQTSQAHCPMCRREWQFK 86

The following BLAST results are available for this feature:
BLAST of CmaCh11G007340 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q940X71.9e-5892.98RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1[more]
Q9M2B02.5e-5084.21RING-box protein 1b OS=Arabidopsis thaliana OX=3702 GN=RBX1B PE=2 SV=1[more]
P628771.6e-4983.65E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens OX=9606 GN=RBX1 PE=1 SV=1[more]
P628781.6e-4983.65E3 ubiquitin-protein ligase RBX1 OS=Mus musculus OX=10090 GN=Rbx1 PE=1 SV=1[more]
Q9W5E14.7e-4992.55RING-box protein 1A OS=Drosophila melanogaster OX=7227 GN=Roc1a PE=1 SV=1[more]
BLAST of CmaCh11G007340 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G20570.11.4e-5992.98RING-box 1 [more]
AT5G20570.21.5e-5576.81RING-box 1 [more]
AT5G20570.32.0e-5579.55RING-box 1 [more]
AT3G42830.11.8e-5184.21RING/U-box superfamily protein [more]
AT3G05870.19.2e-1640.00anaphase-promoting complex/cyclosome 11 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024766Zinc finger, RING-H2-typePFAMPF12678zf-rbx1coord: 49..107
e-value: 2.9E-25
score: 88.3
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 18..116
e-value: 5.4E-34
score: 118.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availablePANTHERPTHR11210:SF41E3 UBIQUITIN-PROTEIN LIGASE RBX1coord: 1..114
NoneNo IPR availablePANTHERPTHR11210RING BOXcoord: 1..114
NoneNo IPR availableCDDcd16485mRING-H2-C3H2C2D_RBX1coord: 49..110
e-value: 1.44883E-45
score: 140.582
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 29..114
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 62..107
score: 9.30263

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G007340.1CmaCh11G007340.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0031461 cullin-RING ubiquitin ligase complex
cellular_component GO:0005634 nucleus
molecular_function GO:0097602 cullin family protein binding
molecular_function GO:0061630 ubiquitin protein ligase activity
molecular_function GO:0008270 zinc ion binding