CmaCh11G007000 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G007000
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description30S ribosomal protein S16
LocationCma_Chr11: 3418931 .. 3422172 (-)
RNA-Seq ExpressionCmaCh11G007000
SyntenyCmaCh11G007000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATAAGTTTGTATCATCATGGGCCACATGATAGGTTATTGGGCCTAAACCGGTTCGGTTCAATTGATCCGAATGTGAAATGATAAATAACCAGGAGCCCCCTCGGGAGGGGAGGCGGCAGGCGCGACTTCGGATAGATCTGTGTCATTTCAGTTTTTGGCGAATTTACAGGGTTTTACGAGCTCAAAAATGGTGGTGAGAATTCGATTGTCGAGGTTTGGATGCAAGAACAAGCCGTTTTACAGGGTGATGGCTGCCGATAGCCGATCTCCCAGAGACGGCAAGCATCTCGAGGTTCTAGGTTACTATAATCCCCTGCCAGGTTAATTCCTCTGTTATTTCCTTTTTTTGTTTTGTTTGTTTATTTCGAAAATGTGATTGATTACTCCCCTGCTAGCTTGGATGTTGGAGTTTAGATTCTCGATTAGGAAAACATTCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCTCCATTGATTTGAGTAATTTTGTGCAGGTCAAGATGGCGGTAAACGAATGGGTCTTAATTTTGAAAGAGTGAAGTAAGTGATTTCTTTTGATTTAAAGCTTGTTTATTCTTGAATATCTACGATTCCCGAATTTAAGTGGTGCATTGCAATTGTAAATACTAGTTTCCTTTGTCAGAATAGGATTATTTCGCCAATGCTTCTTCGATGGACTTTTAGGGAACCATTTCTGAGGCTAATATGTTTTCTGTGGTTAAATAGAGAATTACTACAACGTTAAATTCTGTCTAGTCTAACAATTTAAGCTTTTAATTACAATATGTAAAGTGGTCGAAACTTTTAGGTCTAGTGGTGAATCAACATGCTATAAAAAAAGATGTCCTATTTGATAATAGAAAAAAAGGTCCTAAATTCAAGCTCATGTTATGATACTTTCCGTCCCATTATAGCAACAAGTCGCACATTGCACTGTATGAGTCTAATTAGAATTTTGGCTACACCTGAGTGAAAATGTAAAAAAAGTGTCAATTGACTAAATTTATCTTTACTCGACAAATTAAGTTAAAAAAAGTGCCCCAGTAGTTTAGTTGATTAGGTGTTTGAGAAGTGGTTCTATTTTCTTGTGGCGGCAAAGAATTGAAAAAAGTTGGTGGTTCTTTCTGCATGTCATGGCTGGAACTTCATATTGTAAGCTAAAGTTATGTCAGGAAGCAACTTAGTTGAGCAAGGAATTGAACTATGGTGCTGGCACCAACTTGTCAAAAAGTAGCCAAGTGTGCGATTGTCTGATGGGCATGTCCATTGGTTAAGCCAGTAGGAAATGGTAAAATAGAGGGAGTGCACCAGTTAACTAGATACCTAAAGGAATTGATTATCGAGATGATGGAGACAATGAGAAATCTTTACTTTGTAGAGCATCTATGAATTTATCAAATATCAATCAGTTCTCTTATTAGGAATGTAGAATCTTTTGTTTGCTTTCATTGCATTCCTAATTTCAAGTTCTATTTAATTATTAGTAAAGATCTCAGAGGATGAAACTCGTAAGATAAATCTTTATCTTAGGATATCATTCCTATTATATGAAGGTATCATGCAATGCATAAGAGTAAACCATCATGTACAAGTCTTTAGCATTCAGCGTTTTCTCTCTAAATCGTTTCTACCCCTTCATTTTCCAAGTGTTTCTACTCTTCTCACCCTCAAATCCAATTAAAAGGGGACCCTCCTCCACTTATTTTCCAGATTATTCAGCGAGAGTGAGTTTGCTTCGAGTTTCAGCAGCCGATTTCCTTTGTTTCTCCTTTTCCTCCCCTTCCAATCGGCCTCCCACTCCCTTCTTAAGGTACCCAACTCTCCGATTTCAAGCAAAAATCCGGGGTTGAAGCTGACCAAAACCTCCCTTGCATGCCACTGTTCTGTTACCTCTACCACCTGTCGTTGGTCACAGTGTACAGCCGGCGACTCACACGTTTTATGAAAATTTATTTATTCCCTTTTTATTGAAAAAAAAATCAGATACTACATTGACTGTGCTAGTCTCCAATTTAAAGCTCATCAAGCACGATAGCATCTTAAAATTTGGAGTAACCATTTACTCTTTCCCTCCCTTTCAGATATTGGCTTTCAGTTGGTGCTCAACCTTCAGATCCTGTGCAGCGAATTCTTTTTAGAGCAGGGGTACTTCCACCACCCCCAATGGTTGCAATGGCACGTAAAGGTGGACCACGTGATACTCGTCCTGTTGATCCCCTTAGCGGACGCTTCACGACTCCACAGAAGGCAACTGATGATTCCAATAGCAGCAAAGATGGGGACGCTGATTCATAAAATTTTTCTTTAGAAAAGCCTCTGGAACAACCTGTTGTTCAGGTAATAGAGTTCAATAAATCTGTCGATTTACTTCGGTTGCAAGATGAATGGTTTTTTATGGGAAATTATGAAAGGCCGAGTATTTTCAGTTTATTCTGAAATACTAAGACGAGCCTATAGATATGATCAATAGCCAATCCCCAGTGCCAAGTATAGGGCCGTTGGACTTAGCTATCTTAATGAAGGTGAGCCATTCCATTACTTCGAGAAAACATTGTCGTGTTGTTGTATCAATTAAAATGAGATAGGATTATGATTTTGCTTCCGGGGTAGCTTTGAAAACATATCTTTGTGAACTATTAACCATTTCGTTTGCCCGTATGTGCACTGTTTTCTCAGTTGAACTATCTTCTTCAATCCTGTCATCTCTTTGCGACTCTGATTACTCCCCTAGAATGCATATGAGACAATATTTTGCTTTCAGCAAATAGGGTGTGTTAAATTACCTTGTGCTGATAAACCAGAAAGCCTTGGCCCTTGATTCCTTTTAAATAGCATACAAGCATCGTCAATTCCGCATGTAGTTGGAGCATTTTCTTGTGGGTTTAGGGTTCTTTCTTTTTCGTTTATGCTATAGTTTTCCACAGCTTGTTTCTGTTTCTTTTAAACTCAACTATATAATTGTGTACCCACTTTGTTTCAAAGGGCATCAAGAAAAATTGTTGGGCAACCTTGTTTTCGTACTTAATGTTGATGTGTAGCCGAAAGATGATGGCAGGGTACATTTTCTTTTAATGTTGATTGGAGATTTCTAATCGACATGGTAGAAAGAAGAATTACGGGTATTTAGACCAATAGAGTTTGAGTTTGATGATAACTTTCTTCGCATTTTCTCTCTTATTCTCTCATTTACGTCCTTC

mRNA sequence

ATGGAAATAAGAGCCCCCTCGGGAGGGGAGGCGGCAGGCGCGACTTCGGATAGATCTGTGTCATTTCAGTTTTTGGCGAATTTACAGGGTTTTACGAGCTCAAAAATGGTGGTGAGAATTCGATTGTCGAGGTTTGGATGCAAGAACAAGCCGTTTTACAGGGTGATGGCTGCCGATAGCCGATCTCCCAGAGACGGCAAGCATCTCGAGGTTCTAGGTTACTATAATCCCCTGCCAGGTCAAGATGGCGGTAAACGAATGGGTCTTAATTTTGAAAGAGTGAAATATTGGCTTTCAGTTGGTGCTCAACCTTCAGATCCTGTGCAGCGAATTCTTTTTAGAGCAGGGGTACTTCCACCACCCCCAATGGTTGCAATGGCACGTAAAGGTGGACCACGTGATACTCGTCCTGTTGATCCCCTTAGCGGACGCTTCACGACTCCACAGAAGGCAACTGATGATTCCAATAGCAGCAAAGATGGGGACGCTGATTCATAAAATTTTTCTTTAGAAAAGCCTCTGGAACAACCTGTTGTTCAGGTAATAGAGTTCAATAAATCTGTCGATTTACTTCGGTTGCAAGATGAATGGTTTTTTATGGGAAATTATGAAAGGCCGAGTATTTTCAGTTTATTCTGAAATACTAAGACGAGCCTATAGATATGATCAATAGCCAATCCCCAGTGCCAAGTATAGGGCCGTTGGACTTAGCTATCTTAATGAAGGTGAGCCATTCCATTACTTCGAGAAAACATTGTCGTGTTGTTGTATCAATTAAAATGAGATAGGATTATGATTTTGCTTCCGGGGTAGCTTTGAAAACATATCTTTGTGAACTATTAACCATTTCGTTTGCCCGTATGTGCACTGTTTTCTCAGTTGAACTATCTTCTTCAATCCTGTCATCTCTTTGCGACTCTGATTACTCCCCTAGAATGCATATGAGACAATATTTTGCTTTCAGCAAATAGGGTGTGTTAAATTACCTTGTGCTGATAAACCAGAAAGCCTTGGCCCTTGATTCCTTTTAAATAGCATACAAGCATCGTCAATTCCGCATGTAGTTGGAGCATTTTCTTGTGGGTTTAGGGTTCTTTCTTTTTCGTTTATGCTATAGTTTTCCACAGCTTGTTTCTGTTTCTTTTAAACTCAACTATATAATTGTGTACCCACTTTGTTTCAAAGGGCATCAAGAAAAATTGTTGGGCAACCTTGTTTTCGTACTTAATGTTGATGTGTAGCCGAAAGATGATGGCAGGGTACATTTTCTTTTAATGTTGATTGGAGATTTCTAATCGACATGGTAGAAAGAAGAATTACGGGTATTTAGACCAATAGAGTTTGAGTTTGATGATAACTTTCTTCGCATTTTCTCTCTTATTCTCTCATTTACGTCCTTC

Coding sequence (CDS)

ATGGAAATAAGAGCCCCCTCGGGAGGGGAGGCGGCAGGCGCGACTTCGGATAGATCTGTGTCATTTCAGTTTTTGGCGAATTTACAGGGTTTTACGAGCTCAAAAATGGTGGTGAGAATTCGATTGTCGAGGTTTGGATGCAAGAACAAGCCGTTTTACAGGGTGATGGCTGCCGATAGCCGATCTCCCAGAGACGGCAAGCATCTCGAGGTTCTAGGTTACTATAATCCCCTGCCAGGTCAAGATGGCGGTAAACGAATGGGTCTTAATTTTGAAAGAGTGAAATATTGGCTTTCAGTTGGTGCTCAACCTTCAGATCCTGTGCAGCGAATTCTTTTTAGAGCAGGGGTACTTCCACCACCCCCAATGGTTGCAATGGCACGTAAAGGTGGACCACGTGATACTCGTCCTGTTGATCCCCTTAGCGGACGCTTCACGACTCCACAGAAGGCAACTGATGATTCCAATAGCAGCAAAGATGGGGACGCTGATTCATAA

Protein sequence

MEIRAPSGGEAAGATSDRSVSFQFLANLQGFTSSKMVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFTTPQKATDDSNSSKDGDADS
Homology
BLAST of CmaCh11G007000 vs. ExPASy Swiss-Prot
Match: Q9LTS6 (30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS16-2 PE=1 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 6.7e-55
Identity = 99/130 (76.15%), Postives = 117/130 (90.00%), Query Frame = 0

Query: 36  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 95
           MVVRIRLSRFGCKN+PF+RVMAADSRSPRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 96  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 155
           YWLSVGAQPSDPVQR+LFR+G+LPPPPMVAM RKGG RDTRPVDP++GR+   +  T ++
Sbjct: 61  YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVDAENKTVNA 120

Query: 156 NSSKDGDADS 166
           N ++  + D+
Sbjct: 121 NDNQPKEEDT 130

BLAST of CmaCh11G007000 vs. ExPASy Swiss-Prot
Match: O65686 (30S ribosomal protein S16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS16-1 PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.8e-31
Identity = 61/109 (55.96%), Postives = 85/109 (77.98%), Query Frame = 0

Query: 36  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 95
           M V+IRL+R GCK++PFYRV+ AD +S RDGK +EVLG+Y+PL G++   R+ L F+R+K
Sbjct: 1   MTVKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIK 60

Query: 96  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT-RPVDPLSG 144
           YWLSVGAQP+D V+ +LFRAG++PP PMV +  K G + T + V P++G
Sbjct: 61  YWLSVGAQPTDTVESMLFRAGLIPPKPMVVVGSKNGQKSTSQHVSPITG 109

BLAST of CmaCh11G007000 vs. ExPASy Swiss-Prot
Match: A8LMC0 (30S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12) OX=398580 GN=rpsP PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.1e-20
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 0

Query: 36  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 95
           M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D   R+ ++ ERV+
Sbjct: 1   MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEDRVKMDLERVQ 60

Query: 96  YWLSVGAQPSDPVQRILFRAGVLP 120
           YWL  GA+P+D V R+L  A VLP
Sbjct: 61  YWLGEGAKPTDRVARMLEAAEVLP 84

BLAST of CmaCh11G007000 vs. ExPASy Swiss-Prot
Match: Q5LNF2 (30S ribosomal protein S16 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=rpsP PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.1e-20
Identity = 46/83 (55.42%), Postives = 63/83 (75.90%), Query Frame = 0

Query: 36  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 95
           M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV+
Sbjct: 1   MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDVERVQ 60

Query: 96  YWLSVGAQPSDPVQRILFRAGVL 119
           YWLS GAQ +D V R+L  AGV+
Sbjct: 61  YWLSQGAQTTDRVARMLEAAGVV 83

BLAST of CmaCh11G007000 vs. ExPASy Swiss-Prot
Match: A5V9P7 (30S ribosomal protein S16 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) OX=392499 GN=rpsP PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.1e-20
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 0

Query: 36  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 95
           M V IRL+R G K +P+YR++ AD+RSPRDG  +E +G YNPL  +D  KR+ L+ +R K
Sbjct: 1   MAVSIRLARGGAKKRPYYRIVVADARSPRDGAFIEKIGAYNPLLAKDDPKRVVLDTDRAK 60

Query: 96  YWLSVGAQPSDPVQRILFRAGV 118
           +WLSVGAQP+D V R L  AGV
Sbjct: 61  HWLSVGAQPTDRVARFLDAAGV 82

BLAST of CmaCh11G007000 vs. TAIR 10
Match: AT5G56940.1 (Ribosomal protein S16 family protein )

HSP 1 Score: 214.9 bits (546), Expect = 4.8e-56
Identity = 99/130 (76.15%), Postives = 117/130 (90.00%), Query Frame = 0

Query: 36  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 95
           MVVRIRLSRFGCKN+PF+RVMAADSRSPRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 96  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 155
           YWLSVGAQPSDPVQR+LFR+G+LPPPPMVAM RKGG RDTRPVDP++GR+   +  T ++
Sbjct: 61  YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVDAENKTVNA 120

Query: 156 NSSKDGDADS 166
           N ++  + D+
Sbjct: 121 NDNQPKEEDT 130

BLAST of CmaCh11G007000 vs. TAIR 10
Match: AT4G34620.1 (small subunit ribosomal protein 16 )

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-32
Identity = 61/109 (55.96%), Postives = 85/109 (77.98%), Query Frame = 0

Query: 36  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 95
           M V+IRL+R GCK++PFYRV+ AD +S RDGK +EVLG+Y+PL G++   R+ L F+R+K
Sbjct: 1   MTVKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIK 60

Query: 96  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT-RPVDPLSG 144
           YWLSVGAQP+D V+ +LFRAG++PP PMV +  K G + T + V P++G
Sbjct: 61  YWLSVGAQPTDTVESMLFRAGLIPPKPMVVVGSKNGQKSTSQHVSPITG 109

BLAST of CmaCh11G007000 vs. TAIR 10
Match: ATCG00050.1 (ribosomal protein S16 )

HSP 1 Score: 55.1 bits (131), Expect = 6.3e-08
Identity = 28/81 (34.57%), Postives = 45/81 (55.56%), Query Frame = 0

Query: 37  VVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKY 96
           +V++RL R G K +  YR++A D R  R+G+ L  +G+Y+P+  Q       LN   +  
Sbjct: 1   MVKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQ-----TFLNLSAILD 60

Query: 97  WLSVGAQPSDPVQRILFRAGV 118
           +L  GAQP+     I  +AG+
Sbjct: 61  FLKKGAQPTRTAHDISKKAGI 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LTS66.7e-5576.1530S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Arabidopsis thaliana... [more]
O656861.8e-3155.9630S ribosomal protein S16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP... [more]
A8LMC04.1e-2054.7630S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14... [more]
Q5LNF24.1e-2055.4230S ribosomal protein S16 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 /... [more]
A5V9P74.1e-2056.1030S ribosomal protein S16 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM... [more]
Match NameE-valueIdentityDescription
AT5G56940.14.8e-5676.15Ribosomal protein S16 family protein [more]
AT4G34620.11.3e-3255.96small subunit ribosomal protein 16 [more]
ATCG00050.16.3e-0834.57ribosomal protein S16 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000307Ribosomal protein S16PFAMPF00886Ribosomal_S16coord: 44..105
e-value: 1.3E-26
score: 92.5
IPR000307Ribosomal protein S16TIGRFAMTIGR00002TIGR00002coord: 38..117
e-value: 1.4E-31
score: 106.3
IPR000307Ribosomal protein S16PANTHERPTHR1291930S RIBOSOMAL PROTEIN S16coord: 36..160
IPR000307Ribosomal protein S16HAMAPMF_00385Ribosomal_S16coord: 37..115
score: 23.762827
IPR023803Ribosomal protein S16 domain superfamilyGENE3D3.30.1320.10coord: 25..160
e-value: 5.0E-47
score: 160.9
IPR023803Ribosomal protein S16 domain superfamilySUPERFAMILY54565Ribosomal protein S16coord: 38..129
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..165
NoneNo IPR availablePANTHERPTHR12919:SF3030S RIBOSOMAL PROTEIN S16-LIKEcoord: 36..160

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G007000.1CmaCh11G007000.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000724 double-strand break repair via homologous recombination
biological_process GO:0006334 nucleosome assembly
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005634 nucleus
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0005524 ATP binding
molecular_function GO:0008094 ATP-dependent activity, acting on DNA
molecular_function GO:0003697 single-stranded DNA binding
molecular_function GO:0003735 structural constituent of ribosome