CmaCh11G006850 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G006850
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Cytidine deaminase
Location	Cma_Chr11: 3330288 .. 3334298 (+)
RNA-Seq Expression	CmaCh11G006850
Synteny	CmaCh11G006850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTAAGCAACCGCATAACAGCTATTCTGAACTTCCTAATCTTCCTAAGTTCCATCCCCGTCATAGCCGCCGGAATCTGGCTTGCTTCTAAGCCCGACAACGAGTGTGTCCAGCTTCTCCGGTGGCCGGTTGTGGTTCTCGGTGGCCTCCTCCTCCTCGTCTCTCTCATCGGCTTCGTCGGCGCCTACTGCAACCGCCCTGGTTTCTTGGCTGTCTACCTCTTCTGCATGGCCCTCCTCATCCTCCTCCTTCTCATTCTCCTTGTCATCGCCTTCACCGTCACCCGCCCCGACGGCAGCCATCCCGTCGCCGGTAGCCAGTTCCAGGAGTATCGCCTCGACGGTTACTCCTCATGGCTCCGTAACCACGTCACTAGCTCCGGAAGTTGGCAGAACGTGCGTACGTGTTTGGCTGTTTCCGATGTCTGTCCAAAGCTGGATCGGCAGTTTTCCTCGGCCCACCAGTTTTTCGCGGCGGATATTTCCCCACTTCAGGCAAGTTTTCTTTATTATTATTATTAAAATGAATTACCCTTATTCTTAACCATTATTCTTTAGAATATATTTTGAGAGAAAAATACTACTAAATTAATACTTGGTCTAAAAGAAATATTAACTTTTTAACATTAAAGAATAAAAATAAATAATAACACTATTATGCATGATTTTTGAATGAAAATAAACAAATAAATGTGACTAGCATTTTATTTTTATTTAAAAATATTAAATGACTAGAACACGTTAATCAACCCAATTTAAAGAATTTATAGTTCGAGTTCATTATTTAATAAAAAATAGTTTGAAACTTGAACAATTAGACTGAGCCTAAAAAATAACTAAACCCAACTCGACCCCAATAAAATTGGGATCGAAGGTGTAATCTCCGTTTACAACTAAAATATGATATAAACTATTAACTAATATTTAAGAGTAAAAAAATATATAATTAACTAAATCTTGTAAATTTGTTAAGTAAGGTAAATAAAATAAAATATACTGTCTAATAACTTCAATAAAAATATTAACTATTTATCTATATCTAAGATATACTTCCTAACTAATTATTATAATATATTCTTACGGTAAAAAAATAATAATAGTAATAACCGTATAAAGTTTATAAATATTTTTAAATTAATAAAAACAAAAACATTAGCTAAGTTATTTTTTCCAAAACTGTAATTAATTGAGAGAGATAAATCCGTGAAGAACTGGTTTCACGGAATCTGTGAAGGGGACATGGAAATGGAAACTCCGAGACACAGAAAGAAAAAGGAGTTTGGGATGAAGATGAAGATGGAGATGAAGATGGAGATGAAGAAGGTTCGATCGAATCTCGGAAGTGGAATTAGAAACAGGAACGGAACAATGCTTTTCAAGGAATCTCACCCCATTTAGACACCAAAAGCAAAACATTATTCGAATCACAAAAGCAGAACAACAATCCAAAACCCTAAGGATTTCAGCGAATAAATCCAATAAAACCTAATCCGATTTCATCTCATCCTATCTTCCTCTATATTTCAACAGTCAGGCTGCTGCAAACCGCCGGCGGCGTGCGGATACACTTACGAGACCCCGACGACATGGGTAAACCCGGAAAACCCGACGTCCGACCCGGATTGCTTGATGTGGAGCAACGAGAGGACCCGACTCTGTTACGATTGCAGCGGCTGCAAGGCGGGGCTGCTTGGAAACCTCCGCCAGGAGTGGCGGAAGGCAAACGCCGTTCTCATCGTCGCAGTGGTGGTTCTGATTTTCGTGTATCTCGTCGCCTGTGCCGCCTATAAGAATGCGCAAATCCAGAATATCTCTGTTCGGTATAAACATGGGTGGATTTGAGCTAACCCCACATCCAAACGCTCCCCATTTTCCCTCCAATTCAATGCTCATGTATGTTGTTAGTTCCTGTAACCTTTTAATTAACCACGTGTTAGAACTATGTTTAAATTGGCATATATTTTTAATTTAGTTACCATAAGAGTATTAATTAAAAAAAATACAAATTTAACTCAATTTCACATTGATAGGGAATTCAGATATAAACACATCGTCAAATAGTTGGATTCTCAGAAATTTCACATTCAGAAAAAATGTTACGATTCTCTTATATTTCTCTCGAGTAACTACATGAGTTACAACTAAAACACATACGCACGATCATTTAAAATAAATAAAGACATTATGTTTATAATATTAAGAGAGGCCTAAAAGTTAGAGATTCGTGTGAAAGTAGCTAACTTTTGAAGTGAACCAATAAGAGAAGTCCAATTATTTGGAAGCATCTTATGAATCAAATGATTGATAGGTGTATTATGATACCATCAATCCATCATACTTGTACACAAAGAATGCTAGTACGGTTGTTAATCTTACAAGACTCGTCAGGATCATGCGAGATAAAGAAGATCATTTATTAAATCATCAGGAACTTGGAGGCGGGAGAACCGCCAAAAAAAAAAAAAAATTATTATTACTTTTGTGAAGTTAAAGTTTGTGATAGGCTGTTAATGCTTAATGATTCAGTGTTTTTTTCCCATAAAAAATAATGAGTCGATCAATAATTGTGGTTGATTTGTATTTGCTGAATAATTATCCTTATTTAAAAAAAGAAAAGAAAAAGATTAAAAAGAATGGTAAGAAATGGATCTCATTTACACGAGGGATCCATTACTGGGTAGGTAAATATAGCTAAGTTAAAATGCTAACAAGCTATCTCCAACTAGGATTAAAAATAATCGATTGAAAAAATTAAAATTAAGAGTTTAATTTATTTTTTAATAAATGTTAATTTTTATTTAGTTTTATTTCATATGAAATTTACATTACGTTATTATCATACAAATTAAATATTTTAAAATCTCCAAATTATTTAATTCCAATTTTTTTGGGAATAATTGTTTTTTTATTAAAAAAAAAAATTCAATTTTCTGAAATAAATAAATAACACCTTTAATAGTTCCTTCTATGAATTTTCGTCCATCGACTCTAATAATAATAATTTAAAATCCAAAATAAAAATCTATTTATATTCTCATCTAGTATTCGTTCTCATCAGTTCCGCCCCGTACTCCGACGAACTCTTATTCCTCCTCTCCGTCACCGCCGCCGCCATTTTCGCCGGCAATGGACGGACCTAGGTTCGTAATCGAAGCATCAGAAGCGGAATCCATGGCGAAAAAATCAGGCATCGCAATCCCTCTGCTTCTTCCATCTCTGGTCGAATCGGCGCAGGGCTTAGCCCGGCCGCCGATCTCTAAATTCCACGTCGGCGCCGTCGGACTCGGATCCTCCGGCAGAGTGTTCTTTGGAGTGAATCTTGAATTCCCCGGCCTTCCTCTTCATCACTCTGTTCACGCCGAACAATTTCTCGTCATGAATCTCGCTCTCAACGATGAATCTCGCCTCAATTTCCTTGCCGTCTCTGCCGCGCCATGTGGCCATTGCCGCCAATTTCTTCAAGAAGTTCGCGCCGCTGCCGAGATCGAAATCTTCGTCTCCTCAATCGAATCCTGTTCCAAATCGAACGATTACGTTCCTCTCCCCGAACTTCTCCCCCATCGATTTGGCCCCGACGACCTTCTTGATAAGAGCATTCCGTTGATTCTCGAACCTCGATTTAACGGCCTTTCCCTGCCGGACGAATCCGCCGGAAATCATAATGGCGATTGGGAGAAACTCAAAAGCGTCGCCCTAAACGCTGCGAATGTGTCTCACGCGCCGTACAGTAAATGTCCTTCAGGAGTTGCGGTGATGGACGCCGATGGACGAGTTTACAAAGGACCGTACATGGAATCGGCGGCGTATAATCCGAGTATGGGGCCGGTACAGGCGGCGGTGATAGCGTACGTCTCCGGCGGTGGTGAAGGGTATGAGAAAATCGTCGCCGCCGTGTTGGTGGAGAAGGAGGGCGTGGAGGTGAAGCAAGAACACACAGCAAGGCTGTTACTGCAGGTAATCTCGCCAGTATGTGAATTCAGAGTGGTTCATTGTATCGCCGCCGTGTGA

mRNA sequence

ATGGCAGTAAGCAACCGCATAACAGCTATTCTGAACTTCCTAATCTTCCTAAGTTCCATCCCCGTCATAGCCGCCGGAATCTGGCTTGCTTCTAAGCCCGACAACGAGTGTGTCCAGCTTCTCCGGTGGCCGGTTGTGGTTCTCGGTGGCCTCCTCCTCCTCGTCTCTCTCATCGGCTTCGTCGGCGCCTACTGCAACCGCCCTGGTTTCTTGGCTGTCTACCTCTTCTGCATGGCCCTCCTCATCCTCCTCCTTCTCATTCTCCTTGTCATCGCCTTCACCGTCACCCGCCCCGACGGCAGCCATCCCGTCGCCGGTAGCCAGTTCCAGGAGTATCGCCTCGACGGTTACTCCTCATGGCTCCGTAACCACGTCACTAGCTCCGGAAGTTGGCAGAACGTGCGTACGTGTTTGGCTGTTTCCGATGTCTGTCCAAAGCTGGATCGGCAGTTTTCCTCGGCCCACCAGTTTTTCGCGGCGGATATTTCCCCACTTCAGTCAGGCTGCTGCAAACCGCCGGCGGCGTGCGGATACACTTACGAGACCCCGACGACATGGGTAAACCCGGAAAACCCGACGTCCGACCCGGATTGCTTGATGTGGAGCAACGAGAGGACCCGACTCTGTTACGATTGCAGCGGCTGCAAGGCGGGGCTGCTTGGAAACCTCCGCCAGGAGTGGCGGAAGGCAAACGCCGTTCTCATCGTCGCAGTGGTGGTTCTGATTTTCGTGTATCTCGTCGCCTGTGCCGCCTATAAGAATGCGCAAATCCAGAATATCTCTTATTCGTTCTCATCAGTTCCGCCCCGTACTCCGACGAACTCTTATTCCTCCTCTCCGTCACCGCCGCCGCCATTTTCGCCGGCAATGGACGGACCTAGGTTCGTAATCGAAGCATCAGAAGCGGAATCCATGGCGAAAAAATCAGGCATCGCAATCCCTCTGCTTCTTCCATCTCTGGTCGAATCGGCGCAGGGCTTAGCCCGGCCGCCGATCTCTAAATTCCACGTCGGCGCCGTCGGACTCGGATCCTCCGGCAGAGTGTTCTTTGGAGTGAATCTTGAATTCCCCGGCCTTCCTCTTCATCACTCTGTTCACGCCGAACAATTTCTCGTCATGAATCTCGCTCTCAACGATGAATCTCGCCTCAATTTCCTTGCCGTCTCTGCCGCGCCATGTGGCCATTGCCGCCAATTTCTTCAAGAAGTTCGCGCCGCTGCCGAGATCGAAATCTTCGTCTCCTCAATCGAATCCTGTTCCAAATCGAACGATTACGTTCCTCTCCCCGAACTTCTCCCCCATCGATTTGGCCCCGACGACCTTCTTGATAAGAGCATTCCGTTGATTCTCGAACCTCGATTTAACGGCCTTTCCCTGCCGGACGAATCCGCCGGAAATCATAATGGCGATTGGGAGAAACTCAAAAGCGTCGCCCTAAACGCTGCGAATGTGTCTCACGCGCCGTACAGTAAATGTCCTTCAGGAGTTGCGGTGATGGACGCCGATGGACGAGTTTACAAAGGACCGTACATGGAATCGGCGGCGTATAATCCGAGTATGGGGCCGGTACAGGCGGCGGTGATAGCGTACGTCTCCGGCGGTGGTGAAGGGTATGAGAAAATCGTCGCCGCCGTGTTGGTGGAGAAGGAGGGCGTGGAGGTGAAGCAAGAACACACAGCAAGGCTGTTACTGCAGGTAATCTCGCCAGTATGTGAATTCAGAGTGGTTCATTGTATCGCCGCCGTGTGA

Coding sequence (CDS)

ATGGCAGTAAGCAACCGCATAACAGCTATTCTGAACTTCCTAATCTTCCTAAGTTCCATCCCCGTCATAGCCGCCGGAATCTGGCTTGCTTCTAAGCCCGACAACGAGTGTGTCCAGCTTCTCCGGTGGCCGGTTGTGGTTCTCGGTGGCCTCCTCCTCCTCGTCTCTCTCATCGGCTTCGTCGGCGCCTACTGCAACCGCCCTGGTTTCTTGGCTGTCTACCTCTTCTGCATGGCCCTCCTCATCCTCCTCCTTCTCATTCTCCTTGTCATCGCCTTCACCGTCACCCGCCCCGACGGCAGCCATCCCGTCGCCGGTAGCCAGTTCCAGGAGTATCGCCTCGACGGTTACTCCTCATGGCTCCGTAACCACGTCACTAGCTCCGGAAGTTGGCAGAACGTGCGTACGTGTTTGGCTGTTTCCGATGTCTGTCCAAAGCTGGATCGGCAGTTTTCCTCGGCCCACCAGTTTTTCGCGGCGGATATTTCCCCACTTCAGTCAGGCTGCTGCAAACCGCCGGCGGCGTGCGGATACACTTACGAGACCCCGACGACATGGGTAAACCCGGAAAACCCGACGTCCGACCCGGATTGCTTGATGTGGAGCAACGAGAGGACCCGACTCTGTTACGATTGCAGCGGCTGCAAGGCGGGGCTGCTTGGAAACCTCCGCCAGGAGTGGCGGAAGGCAAACGCCGTTCTCATCGTCGCAGTGGTGGTTCTGATTTTCGTGTATCTCGTCGCCTGTGCCGCCTATAAGAATGCGCAAATCCAGAATATCTCTTATTCGTTCTCATCAGTTCCGCCCCGTACTCCGACGAACTCTTATTCCTCCTCTCCGTCACCGCCGCCGCCATTTTCGCCGGCAATGGACGGACCTAGGTTCGTAATCGAAGCATCAGAAGCGGAATCCATGGCGAAAAAATCAGGCATCGCAATCCCTCTGCTTCTTCCATCTCTGGTCGAATCGGCGCAGGGCTTAGCCCGGCCGCCGATCTCTAAATTCCACGTCGGCGCCGTCGGACTCGGATCCTCCGGCAGAGTGTTCTTTGGAGTGAATCTTGAATTCCCCGGCCTTCCTCTTCATCACTCTGTTCACGCCGAACAATTTCTCGTCATGAATCTCGCTCTCAACGATGAATCTCGCCTCAATTTCCTTGCCGTCTCTGCCGCGCCATGTGGCCATTGCCGCCAATTTCTTCAAGAAGTTCGCGCCGCTGCCGAGATCGAAATCTTCGTCTCCTCAATCGAATCCTGTTCCAAATCGAACGATTACGTTCCTCTCCCCGAACTTCTCCCCCATCGATTTGGCCCCGACGACCTTCTTGATAAGAGCATTCCGTTGATTCTCGAACCTCGATTTAACGGCCTTTCCCTGCCGGACGAATCCGCCGGAAATCATAATGGCGATTGGGAGAAACTCAAAAGCGTCGCCCTAAACGCTGCGAATGTGTCTCACGCGCCGTACAGTAAATGTCCTTCAGGAGTTGCGGTGATGGACGCCGATGGACGAGTTTACAAAGGACCGTACATGGAATCGGCGGCGTATAATCCGAGTATGGGGCCGGTACAGGCGGCGGTGATAGCGTACGTCTCCGGCGGTGGTGAAGGGTATGAGAAAATCGTCGCCGCCGTGTTGGTGGAGAAGGAGGGCGTGGAGGTGAAGCAAGAACACACAGCAAGGCTGTTACTGCAGGTAATCTCGCCAGTATGTGAATTCAGAGTGGTTCATTGTATCGCCGCCGTGTGA

Protein sequence

MAVSNRITAILNFLIFLSSIPVIAAGIWLASKPDNECVQLLRWPVVVLGGLLLLVSLIGFVGAYCNRPGFLAVYLFCMALLILLLLILLVIAFTVTRPDGSHPVAGSQFQEYRLDGYSSWLRNHVTSSGSWQNVRTCLAVSDVCPKLDRQFSSAHQFFAADISPLQSGCCKPPAACGYTYETPTTWVNPENPTSDPDCLMWSNERTRLCYDCSGCKAGLLGNLRQEWRKANAVLIVAVVVLIFVYLVACAAYKNAQIQNISYSFSSVPPRTPTNSYSSSPSPPPPFSPAMDGPRFVIEASEAESMAKKSGIAIPLLLPSLVESAQGLARPPISKFHVGAVGLGSSGRVFFGVNLEFPGLPLHHSVHAEQFLVMNLALNDESRLNFLAVSAAPCGHCRQFLQEVRAAAEIEIFVSSIESCSKSNDYVPLPELLPHRFGPDDLLDKSIPLILEPRFNGLSLPDESAGNHNGDWEKLKSVALNAANVSHAPYSKCPSGVAVMDADGRVYKGPYMESAAYNPSMGPVQAAVIAYVSGGGEGYEKIVAAVLVEKEGVEVKQEHTARLLLQVISPVCEFRVVHCIAAV

Homology

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BLAST of CmaCh11G006850 vs. ExPASy Swiss-Prot
Match: O65896 (Cytidine deaminase 1 OS=Arabidopsis thaliana OX=3702 GN=CDA1 PE=1 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 1.5e-96
Identity = 189/301 (62.79%), Postives = 225/301 (74.75%), Query Frame = 0


Query: 290 MDGPRFVIEASEAESMAKKSGIAIPLLLPSLVESAQGLARPPISKFHVGAVGLGSSGRVF 349
           MD P FVI++ EAES AK+ G+++  LLPSLV+ AQ  AR PISKF+V  VGLGSSGR+F
Sbjct: 1   MDKPSFVIQSKEAESAAKQLGVSVIQLLPSLVKPAQSYARTPISKFNVAVVGLGSSGRIF 60

Query: 350 FGVNLEFPGLPLHHSVHAEQFLVMNLALNDESRLNFLAVSAAPCGHCRQFLQEVRAAAEI 409
            GVN+EFP LPLHHS+HAEQFLV NL LN E  LNF AVSAAPCGHCRQFLQE+R A EI
Sbjct: 61  LGVNVEFPNLPLHHSIHAEQFLVTNLTLNGERHLNFFAVSAAPCGHCRQFLQEIRDAPEI 120

Query: 410 EIFV------SSIESCSKSNDYVPLPELLPHRFGPDDLLDKSIPLILEPRFNGLSLPD-E 469
           +I +      +  +S + S+ ++ L   LPHRFGPDDLL K  PL+LE   N L + D +
Sbjct: 121 KILITDPNNSADSDSAADSDGFLRLGSFLPHRFGPDDLLGKDHPLLLESHDNHLKISDLD 180

Query: 470 SAGNHNGDWE-KLKSVALNAANVSHAPYSKCPSGVAVMDADGRVYKGPYMESAAYNPSMG 529
           S  N N D    LK  AL AAN S+APYS CPSGV+++D DG+VY+G YMESAAYNPSMG
Sbjct: 181 SICNGNTDSSADLKQTALAAANRSYAPYSLCPSGVSLVDCDGKVYRGWYMESAAYNPSMG 240

Query: 530 PVQAAVIAYV-SGGGEGYEKIVAAVLVEKEGVEVKQEHTARLLLQVISPVCEFRVVHCIA 582
           PVQAA++ YV +GGG GYE+IV AVLVEKE   V+QEHTARLLL+ ISP CEF+V HC  
Sbjct: 241 PVQAALVDYVANGGGGGYERIVGAVLVEKEDAVVRQEHTARLLLETISPKCEFKVFHCYE 300

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BLAST of CmaCh11G006850 vs. ExPASy Swiss-Prot
Match: Q9ZUN5 (Tetraspanin-2 OS=Arabidopsis thaliana OX=3702 GN=TET2 PE=2 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 6.4e-92
Identity = 158/261 (60.54%), Postives = 212/261 (81.23%), Query Frame = 0


Query: 1   MAVSNRITAILNFLIFLSSIPVIAAGIWLASKPDNECVQLLRWPVVVLGGLLLLVSLIGF 60
           MA++N +TAILN L  L SIP+ A+GIWLASKPDNECV LLRWPVVVLG L+L+VS  GF
Sbjct: 1   MALANNLTAILNLLALLCSIPITASGIWLASKPDNECVNLLRWPVVVLGVLILVVSATGF 60

Query: 61  VGAYCNRPGFLAVYLFCMALLILLLLILLVIAFTVTRPDGSHPVAGSQFQEYRLDGYSSW 120
           +GAY  +   LAVYL CMA+LI LLL++L+ AF VTRPDGS+ V G  ++EYRL+G+S+W
Sbjct: 61  IGAYKYKETLLAVYLCCMAILIGLLLVVLIFAFVVTRPDGSYRVPGRGYKEYRLEGFSNW 120

Query: 121 LRNHVTSSGSWQNVRTCLAVSDVCPKLDRQFSSAHQFFAAD-ISPLQSGCCKPPAACGYT 180
           L+ +V  S +W  +R CLA ++VCPKL+++F +A QFF++  I+PLQSGCCKPP ACGY 
Sbjct: 121 LKENVVDSKNWGRLRACLADTNVCPKLNQEFITADQFFSSSKITPLQSGCCKPPTACGYN 180

Query: 181 YETPTTWVNPENPTSDPDCLMWSNERTRLCYDCSGCKAGLLGNLRQEWRKANAVLIVAVV 240
           +  PT W+NP N  +D DC +WSN++++LCY+C+ CKAGLLGNLR+EWRKAN +LI+ VV
Sbjct: 181 FVNPTLWLNPTNMAADADCYLWSNDQSQLCYNCNSCKAGLLGNLRKEWRKANLILIITVV 240

Query: 241 VLIFVYLVACAAYKNAQIQNI 261
           VLI+VY++AC+A++NAQ +++
Sbjct: 241 VLIWVYVIACSAFRNAQTEDL 261

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BLAST of CmaCh11G006850 vs. ExPASy Swiss-Prot
Match: Q9SU86 (Cytidine deaminase 6 OS=Arabidopsis thaliana OX=3702 GN=CDA6 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 4.0e-70
Identity = 151/293 (51.54%), Postives = 193/293 (65.87%), Query Frame = 0


Query: 294 RFVIEASEAESMAKKSGIAIPLLLPSLVESAQGLARPPISKFHVGAVGLGSSGRVFFGVN 353
           +FV   SE    A + G+  P  LP L++ A  LAR P+S F VGAVGL SSG VF GVN
Sbjct: 2   KFVYTPSE----AAEEGVRGPSDLPKLIDKAMSLARAPVSTFKVGAVGLTSSGEVFLGVN 61

Query: 354 LEFPGLPLHHSVHAEQFLVMNLALNDESRLNFLAVS------AAPCGHCRQFLQEVRAAA 413
           +EFP LPLHH++HAEQFLV NLALN   +L  +AVS       APCGHCRQF QE+R A 
Sbjct: 62  VEFPNLPLHHTIHAEQFLVTNLALNSMKKLTHIAVSVTGTIFGAPCGHCRQFYQEMRNAP 121

Query: 414 EIEIFVSSIESCSKSNDYVPLPELLPHRFGPDDLLDKSIPLILEPRFNGLSLPD-ESAGN 473
           EIEI +   +     ++++ L  L+P RFGPD +L +   L+LE R N L L D E   +
Sbjct: 122 EIEILIKRPK--DGIDEFMSLKSLMPERFGPDSILPEDASLLLEQRDNSLVLSDPEEICS 181

Query: 474 HNGDWEKLKSVALNAANVSHAPYSKCPSGVAVMDADGRVYKGPYMESAAYNPSMGPVQAA 533
              D    K  AL AAN S+APYSKCPSGVA++   G VYKG Y+ES AYNPS+GPV+AA
Sbjct: 182 DPEDCSHTKCRALAAANKSYAPYSKCPSGVALI-CGGEVYKGWYIESVAYNPSLGPVEAA 241

Query: 534 VIAYVS-GGGEGYEKIVAAVLVEKEGVEVKQEHTARLLLQVISPVCEFRVVHC 579
           ++ +V+ GGG+ + +I   VLVE + V+V QE TAR  L  I+P C+F+V+HC
Sbjct: 242 LVDFVARGGGKEFNEITEVVLVEMKDVKVSQEATARTFLDKIAPKCDFKVLHC 287

[Close]

BLAST of CmaCh11G006850 vs. ExPASy Swiss-Prot
Match: Q9SU87 (Cytidine deaminase 7 OS=Arabidopsis thaliana OX=3702 GN=CDA7 PE=2 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.4e-69
Identity = 151/300 (50.33%), Postives = 193/300 (64.33%), Query Frame = 0


Query: 289 AMDGPRFVIEASEAESMAKKSGIAIPLLLPSLVESAQGLARPPISKFHVGAVGLGSSGRV 348
           A D  +FV  A EA S     G+  P+ LP L+  A  LAR PISK+ VGAVG  SSGRV
Sbjct: 3   AQDKYKFVFTAKEAAS----EGVTEPIRLPKLIRKAMSLARGPISKYKVGAVGRASSGRV 62

Query: 349 FFGVNLEFPGLPLHHSVHAEQFLVMNLALNDESRLNFLAVS--------AAPCGHCRQFL 408
           + GVN+EFPGLPLHHS+H EQFLV NLALN E  L  LAV+         APCG+CRQFL
Sbjct: 63  YLGVNVEFPGLPLHHSIHPEQFLVTNLALNSEKGLRQLAVAISSDCIEFGAPCGNCRQFL 122

Query: 409 QEVRAAAEIEIFVSSIESCSKSNDYVPLPELLPHRFGPDDLLDKSIPLILEPRFNGLSLP 468
            E     +I+I + S      S  +  L  LLP+RF PDD+L K  PL+LE R N L+L 
Sbjct: 123 METSNELDIKILLKSKHEAEGS--FSSLKLLLPYRFTPDDVLPKGSPLLLEKRDNCLTLS 182

Query: 469 DESAGNHNGDWEKLKSVALNAANVSHAPYSKCPSGVAVMDADGRVYKGPYMESAAYNPSM 528
             +    + D   LK  AL AAN S +PY++ PSGVA+ D +G+ Y+G Y+ES AY+PS+
Sbjct: 183 GSTEEICSSDCSHLKCKALAAANNSFSPYTESPSGVALQDDEGKWYRGWYIESVAYSPSL 242

Query: 529 GPVQAAVIAYVS-GGGEGYEKIVAAVLVEKEGVEVKQEHTARLLLQVI-SPVCEFRVVHC 579
           GPVQAA++ +V+   G+G+ KIV AVLVEK    V QE TA+++L  I +P C+F+V HC
Sbjct: 243 GPVQAALVDFVARSRGKGFNKIVEAVLVEKNNARVSQERTAKMILDTIAAPNCDFKVFHC 296

[Close]

BLAST of CmaCh11G006850 vs. ExPASy Swiss-Prot
Match: Q9FIQ5 (Protein TORNADO 2 OS=Arabidopsis thaliana OX=3702 GN=TRN2 PE=1 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.2e-67
Identity = 118/260 (45.38%), Postives = 172/260 (66.15%), Query Frame = 0


Query: 1   MAVSNRITAILNFLIFLSSIPVIAAGIWLASKPDNECVQLLRWPVVVLGGLLLLVSLIGF 60
           M +SN +   +NF+  L SIPVI AGIWLA    N CV+LL+WPV++LG L+LLV L GF
Sbjct: 1   MPLSNNVIGCINFITVLLSIPVIGAGIWLAIGTVNSCVKLLQWPVIILGVLILLVGLAGF 60

Query: 61  VGAYCNRPGFLAVYLFCMALLILLLLILLVIAFTVTRPDGSHPVAGSQFQEYRLDGYSSW 120
           +G +      L VYL  M +LI+LL  L+   + VT     HP     + EY L  +S W
Sbjct: 61  IGGFWRITWLLVVYLIAMLILIVLLGCLVGFIYMVTIRGSGHPEPSRAYLEYSLQDFSGW 120

Query: 121 LRNHVTSSGSWQNVRTCLAVSDVCPKLDRQFSSAHQFFAADISPLQSGCCKPPAACGYTY 180
           LR  V  S  W+ +RTCL+ + +CP+L+++++ A  FF A + P+QSGCCKPP  CG+T+
Sbjct: 121 LRRRVQRSYKWERIRTCLSTTTICPELNQRYTLAQDFFNAHLDPIQSGCCKPPTKCGFTF 180

Query: 181 ETPTTWVNPENPTSDPDCLMWSNERTRLCYDCSGCKAGLLGNLRQEWRKANAVLIVAVVV 240
             PT W++P + ++D DCL WSN++  LCY C  CKAGLL N++ +W KA+  L++A++ 
Sbjct: 181 VNPTYWISPIDMSADMDCLNWSNDQNTLCYTCDSCKAGLLANIKVDWLKADIFLLLALIG 240

Query: 241 LIFVYLVACAAYKNAQIQNI 261
           LI VY++ C A++NA+ ++I
Sbjct: 241 LIIVYIIGCCAFRNAETEDI 260

[Close]

BLAST of CmaCh11G006850 vs. TAIR 10
Match: AT2G19570.1 (cytidine deaminase 1 )

HSP 1 Score: 355.1 bits (910), Expect = 1.0e-97
Identity = 189/301 (62.79%), Postives = 225/301 (74.75%), Query Frame = 0


Query: 290 MDGPRFVIEASEAESMAKKSGIAIPLLLPSLVESAQGLARPPISKFHVGAVGLGSSGRVF 349
           MD P FVI++ EAES AK+ G+++  LLPSLV+ AQ  AR PISKF+V  VGLGSSGR+F
Sbjct: 1   MDKPSFVIQSKEAESAAKQLGVSVIQLLPSLVKPAQSYARTPISKFNVAVVGLGSSGRIF 60

Query: 350 FGVNLEFPGLPLHHSVHAEQFLVMNLALNDESRLNFLAVSAAPCGHCRQFLQEVRAAAEI 409
            GVN+EFP LPLHHS+HAEQFLV NL LN E  LNF AVSAAPCGHCRQFLQE+R A EI
Sbjct: 61  LGVNVEFPNLPLHHSIHAEQFLVTNLTLNGERHLNFFAVSAAPCGHCRQFLQEIRDAPEI 120

Query: 410 EIFV------SSIESCSKSNDYVPLPELLPHRFGPDDLLDKSIPLILEPRFNGLSLPD-E 469
           +I +      +  +S + S+ ++ L   LPHRFGPDDLL K  PL+LE   N L + D +
Sbjct: 121 KILITDPNNSADSDSAADSDGFLRLGSFLPHRFGPDDLLGKDHPLLLESHDNHLKISDLD 180

Query: 470 SAGNHNGDWE-KLKSVALNAANVSHAPYSKCPSGVAVMDADGRVYKGPYMESAAYNPSMG 529
           S  N N D    LK  AL AAN S+APYS CPSGV+++D DG+VY+G YMESAAYNPSMG
Sbjct: 181 SICNGNTDSSADLKQTALAAANRSYAPYSLCPSGVSLVDCDGKVYRGWYMESAAYNPSMG 240

Query: 530 PVQAAVIAYV-SGGGEGYEKIVAAVLVEKEGVEVKQEHTARLLLQVISPVCEFRVVHCIA 582
           PVQAA++ YV +GGG GYE+IV AVLVEKE   V+QEHTARLLL+ ISP CEF+V HC  
Sbjct: 241 PVQAALVDYVANGGGGGYERIVGAVLVEKEDAVVRQEHTARLLLETISPKCEFKVFHCYE 300

[Close]

BLAST of CmaCh11G006850 vs. TAIR 10
Match: AT2G19580.1 (tetraspanin2 )

HSP 1 Score: 339.7 bits (870), Expect = 4.5e-93
Identity = 158/261 (60.54%), Postives = 212/261 (81.23%), Query Frame = 0


Query: 1   MAVSNRITAILNFLIFLSSIPVIAAGIWLASKPDNECVQLLRWPVVVLGGLLLLVSLIGF 60
           MA++N +TAILN L  L SIP+ A+GIWLASKPDNECV LLRWPVVVLG L+L+VS  GF
Sbjct: 1   MALANNLTAILNLLALLCSIPITASGIWLASKPDNECVNLLRWPVVVLGVLILVVSATGF 60

Query: 61  VGAYCNRPGFLAVYLFCMALLILLLLILLVIAFTVTRPDGSHPVAGSQFQEYRLDGYSSW 120
           +GAY  +   LAVYL CMA+LI LLL++L+ AF VTRPDGS+ V G  ++EYRL+G+S+W
Sbjct: 61  IGAYKYKETLLAVYLCCMAILIGLLLVVLIFAFVVTRPDGSYRVPGRGYKEYRLEGFSNW 120

Query: 121 LRNHVTSSGSWQNVRTCLAVSDVCPKLDRQFSSAHQFFAAD-ISPLQSGCCKPPAACGYT 180
           L+ +V  S +W  +R CLA ++VCPKL+++F +A QFF++  I+PLQSGCCKPP ACGY 
Sbjct: 121 LKENVVDSKNWGRLRACLADTNVCPKLNQEFITADQFFSSSKITPLQSGCCKPPTACGYN 180

Query: 181 YETPTTWVNPENPTSDPDCLMWSNERTRLCYDCSGCKAGLLGNLRQEWRKANAVLIVAVV 240
           +  PT W+NP N  +D DC +WSN++++LCY+C+ CKAGLLGNLR+EWRKAN +LI+ VV
Sbjct: 181 FVNPTLWLNPTNMAADADCYLWSNDQSQLCYNCNSCKAGLLGNLRKEWRKANLILIITVV 240

Query: 241 VLIFVYLVACAAYKNAQIQNI 261
           VLI+VY++AC+A++NAQ +++
Sbjct: 241 VLIWVYVIACSAFRNAQTEDL 261

[Close]

BLAST of CmaCh11G006850 vs. TAIR 10
Match: AT4G29610.1 (Cytidine/deoxycytidylate deaminase family protein )

HSP 1 Score: 267.3 bits (682), Expect = 2.9e-71
Identity = 151/293 (51.54%), Postives = 193/293 (65.87%), Query Frame = 0


Query: 294 RFVIEASEAESMAKKSGIAIPLLLPSLVESAQGLARPPISKFHVGAVGLGSSGRVFFGVN 353
           +FV   SE    A + G+  P  LP L++ A  LAR P+S F VGAVGL SSG VF GVN
Sbjct: 2   KFVYTPSE----AAEEGVRGPSDLPKLIDKAMSLARAPVSTFKVGAVGLTSSGEVFLGVN 61

Query: 354 LEFPGLPLHHSVHAEQFLVMNLALNDESRLNFLAVS------AAPCGHCRQFLQEVRAAA 413
           +EFP LPLHH++HAEQFLV NLALN   +L  +AVS       APCGHCRQF QE+R A 
Sbjct: 62  VEFPNLPLHHTIHAEQFLVTNLALNSMKKLTHIAVSVTGTIFGAPCGHCRQFYQEMRNAP 121

Query: 414 EIEIFVSSIESCSKSNDYVPLPELLPHRFGPDDLLDKSIPLILEPRFNGLSLPD-ESAGN 473
           EIEI +   +     ++++ L  L+P RFGPD +L +   L+LE R N L L D E   +
Sbjct: 122 EIEILIKRPK--DGIDEFMSLKSLMPERFGPDSILPEDASLLLEQRDNSLVLSDPEEICS 181

Query: 474 HNGDWEKLKSVALNAANVSHAPYSKCPSGVAVMDADGRVYKGPYMESAAYNPSMGPVQAA 533
              D    K  AL AAN S+APYSKCPSGVA++   G VYKG Y+ES AYNPS+GPV+AA
Sbjct: 182 DPEDCSHTKCRALAAANKSYAPYSKCPSGVALI-CGGEVYKGWYIESVAYNPSLGPVEAA 241

Query: 534 VIAYVS-GGGEGYEKIVAAVLVEKEGVEVKQEHTARLLLQVISPVCEFRVVHC 579
           ++ +V+ GGG+ + +I   VLVE + V+V QE TAR  L  I+P C+F+V+HC
Sbjct: 242 LVDFVARGGGKEFNEITEVVLVEMKDVKVSQEATARTFLDKIAPKCDFKVLHC 287

[Close]

BLAST of CmaCh11G006850 vs. TAIR 10
Match: AT4G29600.1 (Cytidine/deoxycytidylate deaminase family protein )

HSP 1 Score: 264.2 bits (674), Expect = 2.4e-70
Identity = 151/300 (50.33%), Postives = 193/300 (64.33%), Query Frame = 0


Query: 289 AMDGPRFVIEASEAESMAKKSGIAIPLLLPSLVESAQGLARPPISKFHVGAVGLGSSGRV 348
           A D  +FV  A EA S     G+  P+ LP L+  A  LAR PISK+ VGAVG  SSGRV
Sbjct: 3   AQDKYKFVFTAKEAAS----EGVTEPIRLPKLIRKAMSLARGPISKYKVGAVGRASSGRV 62

Query: 349 FFGVNLEFPGLPLHHSVHAEQFLVMNLALNDESRLNFLAVS--------AAPCGHCRQFL 408
           + GVN+EFPGLPLHHS+H EQFLV NLALN E  L  LAV+         APCG+CRQFL
Sbjct: 63  YLGVNVEFPGLPLHHSIHPEQFLVTNLALNSEKGLRQLAVAISSDCIEFGAPCGNCRQFL 122

Query: 409 QEVRAAAEIEIFVSSIESCSKSNDYVPLPELLPHRFGPDDLLDKSIPLILEPRFNGLSLP 468
            E     +I+I + S      S  +  L  LLP+RF PDD+L K  PL+LE R N L+L 
Sbjct: 123 METSNELDIKILLKSKHEAEGS--FSSLKLLLPYRFTPDDVLPKGSPLLLEKRDNCLTLS 182

Query: 469 DESAGNHNGDWEKLKSVALNAANVSHAPYSKCPSGVAVMDADGRVYKGPYMESAAYNPSM 528
             +    + D   LK  AL AAN S +PY++ PSGVA+ D +G+ Y+G Y+ES AY+PS+
Sbjct: 183 GSTEEICSSDCSHLKCKALAAANNSFSPYTESPSGVALQDDEGKWYRGWYIESVAYSPSL 242

Query: 529 GPVQAAVIAYVS-GGGEGYEKIVAAVLVEKEGVEVKQEHTARLLLQVI-SPVCEFRVVHC 579
           GPVQAA++ +V+   G+G+ KIV AVLVEK    V QE TA+++L  I +P C+F+V HC
Sbjct: 243 GPVQAALVDFVARSRGKGFNKIVEAVLVEKNNARVSQERTAKMILDTIAAPNCDFKVFHC 296

[Close]

BLAST of CmaCh11G006850 vs. TAIR 10
Match: AT5G46700.1 (Tetraspanin family protein )

HSP 1 Score: 257.3 bits (656), Expect = 3.0e-68
Identity = 118/260 (45.38%), Postives = 172/260 (66.15%), Query Frame = 0


Query: 1   MAVSNRITAILNFLIFLSSIPVIAAGIWLASKPDNECVQLLRWPVVVLGGLLLLVSLIGF 60
           M +SN +   +NF+  L SIPVI AGIWLA    N CV+LL+WPV++LG L+LLV L GF
Sbjct: 1   MPLSNNVIGCINFITVLLSIPVIGAGIWLAIGTVNSCVKLLQWPVIILGVLILLVGLAGF 60

Query: 61  VGAYCNRPGFLAVYLFCMALLILLLLILLVIAFTVTRPDGSHPVAGSQFQEYRLDGYSSW 120
           +G +      L VYL  M +LI+LL  L+   + VT     HP     + EY L  +S W
Sbjct: 61  IGGFWRITWLLVVYLIAMLILIVLLGCLVGFIYMVTIRGSGHPEPSRAYLEYSLQDFSGW 120

Query: 121 LRNHVTSSGSWQNVRTCLAVSDVCPKLDRQFSSAHQFFAADISPLQSGCCKPPAACGYTY 180
           LR  V  S  W+ +RTCL+ + +CP+L+++++ A  FF A + P+QSGCCKPP  CG+T+
Sbjct: 121 LRRRVQRSYKWERIRTCLSTTTICPELNQRYTLAQDFFNAHLDPIQSGCCKPPTKCGFTF 180

Query: 181 ETPTTWVNPENPTSDPDCLMWSNERTRLCYDCSGCKAGLLGNLRQEWRKANAVLIVAVVV 240
             PT W++P + ++D DCL WSN++  LCY C  CKAGLL N++ +W KA+  L++A++ 
Sbjct: 181 VNPTYWISPIDMSADMDCLNWSNDQNTLCYTCDSCKAGLLANIKVDWLKADIFLLLALIG 240

Query: 241 LIFVYLVACAAYKNAQIQNI 261
           LI VY++ C A++NA+ ++I
Sbjct: 241 LIIVYIIGCCAFRNAETEDI 260

The following BLAST results are available for this feature:

BLAST of CmaCh11G006850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65896	1.5e-96	62.79	Cytidine deaminase 1 OS=Arabidopsis thaliana OX=3702 GN=CDA1 PE=1 SV=1	[more]
Q9ZUN5	6.4e-92	60.54	Tetraspanin-2 OS=Arabidopsis thaliana OX=3702 GN=TET2 PE=2 SV=1	[more]
Q9SU86	4.0e-70	51.54	Cytidine deaminase 6 OS=Arabidopsis thaliana OX=3702 GN=CDA6 PE=3 SV=1	[more]
Q9SU87	3.4e-69	50.33	Cytidine deaminase 7 OS=Arabidopsis thaliana OX=3702 GN=CDA7 PE=2 SV=1	[more]
Q9FIQ5	4.2e-67	45.38	Protein TORNADO 2 OS=Arabidopsis thaliana OX=3702 GN=TRN2 PE=1 SV=1	[more]

BLAST of CmaCh11G006850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19570.1	1.0e-97	62.79	cytidine deaminase 1	[more]
AT2G19580.1	4.5e-93	60.54	tetraspanin2	[more]
AT4G29610.1	2.9e-71	51.54	Cytidine/deoxycytidylate deaminase family protein	[more]
AT4G29600.1	2.4e-70	50.33	Cytidine/deoxycytidylate deaminase family protein	[more]
AT5G46700.1	3.0e-68	45.38	Tetraspanin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00259	TMFOUR	coord: 38..64 score: 22.62 coord: 6..29 score: 25.53 coord: 65..93 score: 15.48
None	No IPR available	GENE3D	3.40.140.10	Cytidine Deaminase, domain 2	coord: 465..573 e-value: 1.8E-28 score: 100.9
None	No IPR available	GENE3D	3.40.140.10	Cytidine Deaminase, domain 2	coord: 294..446 e-value: 2.6E-34 score: 120.3
None	No IPR available	PANTHER	PTHR32191:SF0	TETRASPANIN-2	coord: 1..260
None	No IPR available	CDD	cd01283	cytidine_deaminase	coord: 328..402 e-value: 1.57377E-17 score: 76.611
None	No IPR available	CDD	cd01283	cytidine_deaminase	coord: 478..543 e-value: 3.73588E-7 score: 46.9506
IPR002125	Cytidine and deoxycytidylate deaminase domain	PFAM	PF00383	dCMP_cyt_deam_1	coord: 328..405 e-value: 2.5E-10 score: 40.1
IPR002125	Cytidine and deoxycytidylate deaminase domain	PROSITE	PS51747	CYT_DCMP_DEAMINASES_2	coord: 312..439 score: 22.112715
IPR002125	Cytidine and deoxycytidylate deaminase domain	PROSITE	PS51747	CYT_DCMP_DEAMINASES_2	coord: 469..582 score: 20.799868
IPR018499	Tetraspanin/Peripherin	PFAM	PF00335	Tetraspanin	coord: 6..249 e-value: 2.6E-28 score: 99.3
IPR013171	Cytidine/deoxycytidylate deaminase, zinc-binding domain	PFAM	PF08211	dCMP_cyt_deam_2	coord: 429..561 e-value: 5.3E-49 score: 165.9
IPR006263	Cytidine deaminase, homodimeric	TIGRFAM	TIGR01355	TIGR01355	coord: 294..578 e-value: 2.4E-107 score: 356.4
IPR044991	Tetraspani, plant	PANTHER	PTHR32191	TETRASPANIN-8-RELATED	coord: 1..260
IPR016192	APOBEC/CMP deaminase, zinc-binding	PROSITE	PS00903	CYT_DCMP_DEAMINASES_1	coord: 366..400
IPR016193	Cytidine deaminase-like	SUPERFAMILY	53927	Cytidine deaminase-like	coord: 316..408
IPR016193	Cytidine deaminase-like	SUPERFAMILY	53927	Cytidine deaminase-like	coord: 425..564

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G006850.1	CmaCh11G006850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009972	cytidine deamination
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004126	cytidine deaminase activity
molecular_function	GO:0047844	deoxycytidine deaminase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0016787	hydrolase activity