CmaCh11G006730 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G006730
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Helicase ATP-binding domain-containing protein
Location	Cma_Chr11: 3253409 .. 3255653 (+)
RNA-Seq Expression	CmaCh11G006730
Synteny	CmaCh11G006730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGACTTAGAGTTAGCGCTGGTTAGGGTTCGTAACGAAGGCGGTGGTTTAGTCTACGGCTATCTGGCTGTGGCTTCTTCAATCTTGGCTGCGAACCCTGAACCACCTGATCACGGAGTAGGCGATGGCGATCAAGAAGTTGGCTAGAGTTTTGATGAAATCTCGGGAAGATGGCTTGTCTCTACCCACTCGGGATGATCCATCCATTGACGATTCCCGTCCCATCGACAGCCAAGGTAATCAATCAATTCTCTCTGAAGTTTCTCTTCTAGTAGAAATCTTTACTTGATTCATTCTTTGAACTAATTTCCCATATTTCTTCCTTTTTGTTGTACTTTTGCCCTAATTCGGTGTTTGATTGACAGCGCAAGAGGAGATGGTTCGCTCCTTCGAAAGGGCAAATGATCAACAGAGTCTTTTATGGAGGGTATCGTTTGACTGTATATTCATCTACGGATTTTTCCTAATTTTTCTGTATTCGAAGAAAATTTTGGATTCTCGTGTCTGATTGTTGTTCTTCTCTGTGCCTGACTGTTCATCAGACTGTGTTTGCGGCATTTCTTTTTTGCTTCGCGGTTTTCCTTCTTTACTCAATCATTCAGCAGGTTTCATCTCCATGGGAACTGGTATGCTACTTTCTCTGAGAATCTTATCCTGCCCTGCACTGTTCCTCTTCAGATGGTGTTCATATTTTGCAGTAGTTTGAAAGAACTTAACTCCAGTTTAATTGTTATACTTCTATATGCTTTAGTGACGAACGCGTTACTTGCAAAGGATACATTAAACTTATGGAGTTTGCATTATACTGATGTTTCTTTTTTCTCTTCTGCAGCGTTATCATGCTTACTTTATGGAGGATGTTAGCTCATGGATGATTATAGCTGCAGGTTCTTTTTCACAAATTTCTCCTTTATTTTACACTCATTATTGCATGTTTGATTCTCACCCCGTCAATTTGCTTCAAATGTTGAAGATAATTTCACGGCAAAGTTTCTTTTATTTTTTAAAAACATAACATTTCTTGAACAAAATGGAAATACAAGAAAGGCCCCCCCATATCCAAATATTGCAATGGCCAAGTTCACTTCCGTGTTCTATTGAGCTGTAGTCATGTTTTTAAGTTATATACTGTGATGCTCTGTTGAGATCTTTGCTTGCTAATATCAACAATTGAAATTCTACAGATTGGGTTGCTATTTTAGCATGTTCATTTTCGATCATTGGGATTGTTAGCAAGTCAAATTACCACAGGCGATGGCTATGGTGCTCGTTCTTCATTGGCTTCCTACTCTCAGTTTTCTGGTTATACTTTATGATTAGGTACGGTGGGAAAACTCTCAAATCATTTTTTTTTCCTAAAATTATGCTCCTGAATGAAGATATACATACTGGCCTATACTTTATGTCTGACTTGTCTATTAAAATCTCTTCTTTTCCTAGTTTGTTGATGGATGCAAATGCTCTTGTTTTTGGTTCTTTTGCCCATTTTCCTAGAGAGCAGTATGTTGTGAATGGCGAACTATATCAGCTTCGTATGTCTAGTTCATGTATGTAAGAAGAAAATTTCATTGCTGAAATGTACAGTAGCAGGAAAGAGAGGTTTTCACTACCATGGCAGGTTGAGATACAACCTTACAAGAGGGTATTCGACATGTAATAACAGAAGAGAGATAGAATAAGCAAAGTACAGTGTAGTCATAATGCACAAATAGTAGTAGTTATATAGTGCCTCTTCCAACGAATTTTTTCCTTTTGGTCATTTTTCATACTTGTTGGTATGCCCTTGTAAGGGTGATCTTAAGCTTGTTATTTTGATGATAATGAATTTACAGTTTGTAATGTTTGTATTGATTGCAGTTTGCCTAGGTTTCGATGGGATGTTATCTGGCGTCCTTTTGGTACTCTCAGGTAGTTTCTGAAAAATGAAAAAGATTACGACTTGACATGAACTTTCGAACTCACTATGTGCTCACACGCTTCTGTTGATTGCAGCGGGGCTGGAATCTGTTTGTATGTGGATCATTTGCTGGCCGAATCGTCCGAGGAAATACGAAAACTTAGAGGCTATATGTATTCTTATAAAGCTAACTGAAAACTTATGGACGTCTCATAAATTTGTAATCAATTGTATCCTCTGTTCTTACCGAGCTGATAGCATTATATTATATCCCCGTTAGTAGTATGCAGTAGCCGAGATTTTTTTTATTTATTATATTCATAGTTTGATAAAGCAGTCCTATAATCAA

mRNA sequence

TTGACTTAGAGTTAGCGCTGGTTAGGGTTCGTAACGAAGGCGGTGGTTTAGTCTACGGCTATCTGGCTGTGGCTTCTTCAATCTTGGCTGCGAACCCTGAACCACCTGATCACGGAGTAGGCGATGGCGATCAAGAAGTTGGCTAGAGTTTTGATGAAATCTCGGGAAGATGGCTTGTCTCTACCCACTCGGGATGATCCATCCATTGACGATTCCCGTCCCATCGACAGCCAAGCGCAAGAGGAGATGGTTCGCTCCTTCGAAAGGGCAAATGATCAACAGAGTCTTTTATGGAGGACTGTGTTTGCGGCATTTCTTTTTTGCTTCGCGGTTTTCCTTCTTTACTCAATCATTCAGCAGGTTTCATCTCCATGGGAACTGCGTTATCATGCTTACTTTATGGAGGATGTTAGCTCATGGATGATTATAGCTGCAGATTGGGTTGCTATTTTAGCATGTTCATTTTCGATCATTGGGATTGTTAGCAAGTCAAATTACCACAGGCGATGGCTATGGTGCTCGTTCTTCATTGGCTTCCTACTCTCAGTTTTCTGGTTATACTTTATGATTAGTTTGTTGATGGATGCAAATGCTCTTGTTTTTGGTTCTTTTGCCCATTTTCCTAGAGAGCAGTATGTTGTGAATGGCGAACTATATCAGCTTCGTATGTCTAGTTCATGTATGTTGAGATACAACCTTACAAGAGGGTATTCGACATTTTGCCTAGGTTTCGATGGGATGTTATCTGGCGTCCTTTTGGTACTCTCAGCGGGGCTGGAATCTGTTTGTATGTGGATCATTTGCTGGCCGAATCGTCCGAGGAAATACGAAAACTTAGAGGCTATATGTATTCTTATAAAGCTAACTGAAAACTTATGGACGTCTCATAAATTTGTAATCAATTGTATCCTCTGTTCTTACCGAGCTGATAGCATTATATTATATCCCCGTTAGTAGTATGCAGTAGCCGAGATTTTTTTTATTTATTATATTCATAGTTTGATAAAGCAGTCCTATAATCAA

Coding sequence (CDS)

ATGGCGATCAAGAAGTTGGCTAGAGTTTTGATGAAATCTCGGGAAGATGGCTTGTCTCTACCCACTCGGGATGATCCATCCATTGACGATTCCCGTCCCATCGACAGCCAAGCGCAAGAGGAGATGGTTCGCTCCTTCGAAAGGGCAAATGATCAACAGAGTCTTTTATGGAGGACTGTGTTTGCGGCATTTCTTTTTTGCTTCGCGGTTTTCCTTCTTTACTCAATCATTCAGCAGGTTTCATCTCCATGGGAACTGCGTTATCATGCTTACTTTATGGAGGATGTTAGCTCATGGATGATTATAGCTGCAGATTGGGTTGCTATTTTAGCATGTTCATTTTCGATCATTGGGATTGTTAGCAAGTCAAATTACCACAGGCGATGGCTATGGTGCTCGTTCTTCATTGGCTTCCTACTCTCAGTTTTCTGGTTATACTTTATGATTAGTTTGTTGATGGATGCAAATGCTCTTGTTTTTGGTTCTTTTGCCCATTTTCCTAGAGAGCAGTATGTTGTGAATGGCGAACTATATCAGCTTCGTATGTCTAGTTCATGTATGTTGAGATACAACCTTACAAGAGGGTATTCGACATTTTGCCTAGGTTTCGATGGGATGTTATCTGGCGTCCTTTTGGTACTCTCAGCGGGGCTGGAATCTGTTTGTATGTGGATCATTTGCTGGCCGAATCGTCCGAGGAAATACGAAAACTTAGAGGCTATATGTATTCTTATAAAGCTAACTGAAAACTTATGGACGTCTCATAAATTTGTAATCAATTGTATCCTCTGTTCTTACCGAGCTGATAGCATTATATTATATCCCCGTTAG

Protein sequence

MAIKKLARVLMKSREDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLWRTVFAAFLFCFAVFLLYSIIQQVSSPWELRYHAYFMEDVSSWMIIAADWVAILACSFSIIGIVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISLLMDANALVFGSFAHFPREQYVVNGELYQLRMSSSCMLRYNLTRGYSTFCLGFDGMLSGVLLVLSAGLESVCMWIICWPNRPRKYENLEAICILIKLTENLWTSHKFVINCILCSYRADSIILYPR

Homology

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BLAST of CmaCh11G006730 vs. TAIR 10
Match: AT4G26240.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 170.2 bits (430), Expect = 2.3e-42
Identity = 91/166 (54.82%), Postives = 113/166 (68.07%), Query Frame = 0


Query: 3   IKKLARVLMKSR----EDGLSLPTRDDPSIDDSRPIDSQAQEEMVRSFERANDQQSLLWR 62
           +KKLAR   ++R    +D   LPT +D    DSRPID+Q QEE VR  E A+ QQSL WR
Sbjct: 1   MKKLARKWRRTRRDEDDDKFVLPTSEDV---DSRPIDTQEQEEYVRYLEEAHAQQSLQWR 60

Query: 63  TVFAAFLFCFAVFLLYSIIQQVSSPWELRYHAYFMEDVSSWMIIAADWVAILACSFSIIG 122
           +VF   L CF  FL YSI QQ  SPWELRYHAYFMED+ SWM+I+A+W+AI+ACS SI+G
Sbjct: 61  SVFVVLLICFGAFLFYSIFQQFMSPWELRYHAYFMEDLKSWMVISAEWIAIMACSLSIVG 120

Query: 123 IVSKSNYHRRWLWCSFFIGFLLSVFWLYFMISL---LMDANALVFG 162
           +  K N HRRW W S  +G  L++FWLY+++ L     DA  L FG
Sbjct: 121 LRDKKNDHRRWFWYSCVVGSALTIFWLYYLLRLPKFRWDAIWLPFG 163

The following BLAST results are available for this feature:

BLAST of CmaCh11G006730 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh11G006730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26240.1	2.3e-42	54.82	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36784	HISTONE-LYSINE N-METHYLTRANSFERASE	coord: 4..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G006730.1	CmaCh11G006730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane