CmaCh11G006570 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G006570
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionOxidative stress 3
LocationCma_Chr11: 3200582 .. 3201694 (-)
RNA-Seq ExpressionCmaCh11G006570
SyntenyCmaCh11G006570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTATTGATTGATGATAAAGGGTTGGGTTTTTGGATAAAGCAACAAAAAGGGGAATTATCTAACTTTTATGCTACATTTAATTATAAACTAAGCTTTCCACGCATATATAAATAGCTTTTCAAGCGCACATACTACGGTTGCAATATATAATACCTTTCTTCTTCTTCTCCTTCAGATTGATTCCAATGGGAGAATTGCAAGAAACTCAGCGTCTTTATGTTGATGAAGCTCAGAGTGGTTGTTGCAGAACGATCATGGAAGATTGTGAAGCTTCAATGGAGTCTTCCATGGAGTTTAGTTCTGCAAATTCTGAAGCATCTTCTTCTTTGGAGATGGTGGAAGATGCCCTTTCTACAGTTTCGGATTCTTCATTATCATCATCTTCTTCTTCAAATGGACCTCTTTTTGAGCTATCAGAGCTTATGGTTCATCTTCCGATGAAGTAAGTAATGGGATAAATTTTTTTTAAAAAAAACATACCCTTTTCATGATCTTTCTTTGGATACACATTATGATTGAAAGAGTTGATCAATATGACTAATGGGAAAATTTTGAAATGGTTTTGTTTTTGCAGGAGAGGGCTGTCTAAATATTATGACGGCAAATCAGAATCTTTCACATCTCTAGCAAGTGTTGAAAGATTAGAAGATTTAGCGAAGAGGGTTTGTCCAATTAGAAAAAAGTTCAAATCTTGCAAGAGTGTTGGAGGAGGATTTGATGGCCATAAATCCATTGTCCCAAGAGCTACCTTAGCCAAGAAAGCTTCAAGATCAAGAGGGAAAAGTAGTCTGATCTGTGGTTCTAGGTCTGTAGTTTCTGTGAATTGGCACTGATTATTTGCTACCCTTAAATGACTTGACTTGTAAATTTTCAAGCTCATTTCTCCCCTCTTTTTTGTTCTTTTATAAAGAATTTTATAACTTAACCTATCATTTTAAAACATGGGTCCTTCCAGAAAACGAGGAGAATAAATTTGTAGAACCTGATATCAAATGTTGGAAAATTCACATGGGACAAGATAATAATGTATTAAAGATAATCCTAAAGATCACAAACCATTGGTAGAATTTGAGTTACAAATTCTCTCTGTTGAATGAAAGTCTCACATCGGC

mRNA sequence

ATTATTGATTGATGATAAAGGGTTGGGTTTTTGGATAAAGCAACAAAAAGGGGAATTATCTAACTTTTATGCTACATTTAATTATAAACTAAGCTTTCCACGCATATATAAATAGCTTTTCAAGCGCACATACTACGGTTGCAATATATAATACCTTTCTTCTTCTTCTCCTTCAGATTGATTCCAATGGGAGAATTGCAAGAAACTCAGCGTCTTTATGTTGATGAAGCTCAGAGTGGTTGTTGCAGAACGATCATGGAAGATTGTGAAGCTTCAATGGAGTCTTCCATGGAGTTTAGTTCTGCAAATTCTGAAGCATCTTCTTCTTTGGAGATGGTGGAAGATGCCCTTTCTACAGTTTCGGATTCTTCATTATCATCATCTTCTTCTTCAAATGGACCTCTTTTTGAGCTATCAGAGCTTATGGTTCATCTTCCGATGAAGAGAGGGCTGTCTAAATATTATGACGGCAAATCAGAATCTTTCACATCTCTAGCAAGTGTTGAAAGATTAGAAGATTTAGCGAAGAGGGTTTGTCCAATTAGAAAAAAGTTCAAATCTTGCAAGAGTGTTGGAGGAGGATTTGATGGCCATAAATCCATTGTCCCAAGAGCTACCTTAGCCAAGAAAGCTTCAAGATCAAGAGGGAAAAGTAGTCTGATCTGTGGTTCTAGGTCTGTAGTTTCTGTGAATTGGCACTGATTATTTGCTACCCTTAAATGACTTGACTTGTAAATTTTCAAGCTCATTTCTCCCCTCTTTTTTGTTCTTTTATAAAGAATTTTATAACTTAACCTATCATTTTAAAACATGGGTCCTTCCAGAAAACGAGGAGAATAAATTTGTAGAACCTGATATCAAATGTTGGAAAATTCACATGGGACAAGATAATAATGTATTAAAGATAATCCTAAAGATCACAAACCATTGGTAGAATTTGAGTTACAAATTCTCTCTGTTGAATGAAAGTCTCACATCGGC

Coding sequence (CDS)

ATGGGAGAATTGCAAGAAACTCAGCGTCTTTATGTTGATGAAGCTCAGAGTGGTTGTTGCAGAACGATCATGGAAGATTGTGAAGCTTCAATGGAGTCTTCCATGGAGTTTAGTTCTGCAAATTCTGAAGCATCTTCTTCTTTGGAGATGGTGGAAGATGCCCTTTCTACAGTTTCGGATTCTTCATTATCATCATCTTCTTCTTCAAATGGACCTCTTTTTGAGCTATCAGAGCTTATGGTTCATCTTCCGATGAAGAGAGGGCTGTCTAAATATTATGACGGCAAATCAGAATCTTTCACATCTCTAGCAAGTGTTGAAAGATTAGAAGATTTAGCGAAGAGGGTTTGTCCAATTAGAAAAAAGTTCAAATCTTGCAAGAGTGTTGGAGGAGGATTTGATGGCCATAAATCCATTGTCCCAAGAGCTACCTTAGCCAAGAAAGCTTCAAGATCAAGAGGGAAAAGTAGTCTGATCTGTGGTTCTAGGTCTGTAGTTTCTGTGAATTGGCACTGA

Protein sequence

MGELQETQRLYVDEAQSGCCRTIMEDCEASMESSMEFSSANSEASSSLEMVEDALSTVSDSSLSSSSSSNGPLFELSELMVHLPMKRGLSKYYDGKSESFTSLASVERLEDLAKRVCPIRKKFKSCKSVGGGFDGHKSIVPRATLAKKASRSRGKSSLICGSRSVVSVNWH
Homology
BLAST of CmaCh11G006570 vs. TAIR 10
Match: AT5G56550.1 (oxidative stress 3 )

HSP 1 Score: 87.8 bits (216), Expect = 9.1e-18
Identity = 69/149 (46.31%), Postives = 90/149 (60.40%), Query Frame = 0

Query: 23  IMEDCEASMESSMEFSSANSEASS---SLEMVEDALSTVSDSSLSSSSSSNGPLFELSEL 82
           I E+ +   E S  FS     +SS   S  M  D      D  + SSSSSNGPL +LS+L
Sbjct: 23  IQEEEDIVQEVSTTFSDEEDNSSSCSLSSSMCSDFTEDDDDDDV-SSSSSNGPLEDLSDL 82

Query: 83  MVHLPMKRGLSKYYDGKSESFTSLASVERLEDLAKRVCPIRK---KFKSCKSVGGGFD-G 142
           M HLP+KRGLSK+Y+GKS+SFTSL +V+ LEDL KR    R    K KS +S GG  D  
Sbjct: 83  MSHLPIKRGLSKFYEGKSQSFTSLGNVKSLEDLMKRGFKSRNYGAKRKSSRSTGGILDQS 142

Query: 143 HKSIV-PRATLAKKASRSRGKSSLICGSR 164
           +K +  P+AT++KK +R+   S L C +R
Sbjct: 143 YKRVFSPKATISKKPNRT-PSSVLSCLAR 169

BLAST of CmaCh11G006570 vs. TAIR 10
Match: AT4G26288.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: oxidative stress 3 (TAIR:AT5G56550.1); Has 289 Blast hits to 232 proteins in 41 species: Archae - 0; Bacteria - 12; Metazoa - 36; Fungi - 21; Plants - 151; Viruses - 2; Other Eukaryotes - 67 (source: NCBI BLink). )

HSP 1 Score: 76.3 bits (186), Expect = 2.7e-14
Identity = 61/129 (47.29%), Postives = 80/129 (62.02%), Query Frame = 0

Query: 33  SSMEFSSANSEASSSLEMVEDALSTVSDSSLSSSSSSNGPLFELSELMVHLPM----KRG 92
           SS + SS++S +  S ++ EDA    S SS SSSSSSNGP  +LS+L+  LP+    K G
Sbjct: 24  SSAKVSSSSSISMCSSDLTEDA----SSSSSSSSSSSNGPFDDLSDLISQLPIIQVKKGG 83

Query: 93  LSKYYDGKSESFTSLASVERLEDLAKRVCPIRKKFKSCKSVGGGFDGHKSIVPRATLAKK 152
           LSKYY GKS+SFTSLA+V  L+DL KR      + KSC      F G     P+AT++ K
Sbjct: 84  LSKYYKGKSQSFTSLANVTSLQDLVKR----GSRTKSC-CKRDYFYG-----PKATISMK 138

Query: 153 ASRSRGKSS 158
           A+R+  K S
Sbjct: 144 ATRTSSKHS 138

BLAST of CmaCh11G006570 vs. TAIR 10
Match: AT5G21940.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 2.0e-04
Identity = 43/137 (31.39%), Postives = 69/137 (50.36%), Query Frame = 0

Query: 38  SSANSEASSSLEMVEDALSTVSDSSLSSS------SSSNGPLFELSELMVHLPMKRGLSK 97
           SS +S ASSS+    D     S+     +      S   GPL  +  L   LP+++G+SK
Sbjct: 34  SSPSSSASSSIGRNSDDGEKSSEDGGDDAGENEVESPYKGPLEMMESLEQVLPVRKGISK 93

Query: 98  YYDGKSESFT--------SLASVERLEDLAKRVCPIRKKFKS--CKSVGGGFDGHKSIVP 157
           YY GKS+SFT        +L S   ++DLAK   P  ++ ++  C  +   ++ +K+  P
Sbjct: 94  YYSGKSKSFTNLTAEAASALTSSSSMKDLAKPENPYSRRRRNLLCHQI---WENNKT-TP 153

Query: 158 RATLAKKASRSRGKSSL 159
           R  ++KK   S  +S+L
Sbjct: 154 RGGISKKHVMSSSRSAL 166

BLAST of CmaCh11G006570 vs. TAIR 10
Match: AT4G31510.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 205 Blast hits to 205 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 3; Plants - 187; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 3.4e-04
Identity = 34/87 (39.08%), Postives = 46/87 (52.87%), Query Frame = 0

Query: 36  EFSSANSEASSSLEMVEDALSTVSDSSLSSSSSSNGPLFELSELMVHLPMKRGLSKYYDG 95
           E SS+  E S + E  +DA+S+     L+S SSS         L   LP+KRGLS +Y G
Sbjct: 42  ESSSSVGETSENEEDEDDAVSSSQGRWLNSFSSS---------LEDSLPIKRGLSNHYIG 101

Query: 96  KSESFTSLASVERLEDLAKRVCPIRKK 123
           KS+SF +L       DL K   P+ K+
Sbjct: 102 KSKSFGNLMEASNTNDLVKVESPLNKR 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT5G56550.19.1e-1846.31oxidative stress 3 [more]
AT4G26288.12.7e-1447.29FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT5G21940.12.0e-0431.39unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G31510.13.4e-0439.08unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33172OS08G0516900 PROTEINcoord: 13..171
NoneNo IPR availablePANTHERPTHR33172:SF68SUBFAMILY NOT NAMEDcoord: 13..171

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G006570.1CmaCh11G006570.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016310 phosphorylation
molecular_function GO:0016301 kinase activity
molecular_function GO:0000166 nucleotide binding