CmaCh11G006330 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G006330
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	Cma_Chr11: 3065970 .. 3068715 (+)
RNA-Seq Expression	CmaCh11G006330
Synteny	CmaCh11G006330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATAGTGAGTTTGAGATGAGTATGATGGGAGAACTCAGTTTCTTTCTTGGACTTCAAATCAAACAACTCAAGAATGGTATCTTCATCAATCAAGAGAAATACACTAAAGATTTGCTCAAAAGATTCAAGTTCAATGGAGGTAAGATTGCAAGAACTCCCATGAGCACATCCACTAAGCTTGACAAGGATGAAAAAGGTAAAAGTGTGGATATTAAAGCTTATCGAGGTATGATTGGATCTTTACTTTACTTGACCGCTAGTAGACCCGATATTATGTTTAGTGTATGTCTTTGTGCTAGATTTCAATCTTGTCCTAAGGAATCTCATTTACATGCCGTTAAGAGAATATTTAAATATTTGCTTGGAACTATTGATCTAGGATTGTGGTATCCTAGAAATGTTGAATTTAAATTGGTAGGATATTCTGATGCAGATTTTGCCGGAAGCTTACTTGATCGTAAAAGTACTAGTGGAACTTGTCAATTTCTTGGTAGTTCCTTAGTTTCTTGGTTTAGTAAAAAGCAAAATTCGGTTGCCTTATCTACTACCGAAGCGGAATATATTGCGGTTGCTAGTTGCTGTGCTCAAATTCTTTGGATGAAACAAACTCTTTGTGATTTTGGATTAAAGTTTCATAGTGTGCCTATATTTTGTGATAATACAAGTGCTATTAATTTAACTAAAAATCCTATTCATCATTCTAGAACTAAACATATTGACATTAGACATCATTTTATTAGAGAGCATGTGCAAAATGGACATATTATTCTTGATTTTGTAAACTCTAATAATCAACTGGCCGATATTTTCACCAAGCCATTGAATGAAGAAATTTTTTGCAAAAATAGGCTTGAGCTTGGTATTATTCGTTGTGATATATCTTGAATTTTATAATTTTTGAATGCATGTTGTTAGGGGGAGCCATTATGTCATTATTAAATGCATTCTCTTTCAATTGTTCATTTTGATGATTACAAAGGGGGAGAAAATTAAGAAAAATATGTTCTAAATTTGTTATTTTATAATTTATGAATCATTTACTTGGTGTTTCATAATTTCTTGAGGCATTAATATAAGGGAGAATATGCTCTTGAGTGAAATTTATGATAATATATTAGTATGTAGTGATATTATTACATGGATGTTGTATTATTGGTTTTTATGAATTTTTCTTTAAATGATTTGTCATCATCAAAAAGGGGGATATTGTTGGCTTATTGGCCCTTGATCTCACATTAATTAATTTCAATGAATTAATTATTGATGTTTTGATGATAACAAACCTACTTTTAATTATTAACTATTTTCAGTTTTTTGAACTGTCCACAGTATAAGGTCGGGAATAACGATTACAACAACTTTTCAATTACTCAAATCAGAGCTAAAACGAAGAAATTAGAGTCGAGACAACATACCCGACGTGATGATGTGGCAACAAAATCAAAATGATGGACAAATCAAAATATATCAAAGTATGACATTTATAATATTGGAAGAGTAACACATGGTGGAGTTTTTCTTATTATTACATTTCTAAATAAAATTATTTTTACAAATATAAATTTGAATATAACCGTTACTCACATCGAATTTTATTATTACTATATTATATTATTATATTATTATATTTTAAAATTTTGGTAGTTACTCACATCATTTTTATTATTATTATATTATTATATTTATAATAAATTTTGAATTACATTTTACCGTTACTCACATAACTTTTTATTATTATTATATTATATTACTATTATATTAAAATTTTGAAATAAATGAATTTAGAAAATTTTCTTACTTAATTACTTTTAATCTCCACCTTCCATTATTCCTAACACAATCCAATGGTCAATATTCAATCCTACATTTTGCCACTTTTCTCCTCTATATAAACTCATCTTCCCCACATTTTTAAAAGATACAACTTACATACATTCTTCAATCCTCATTTGTTCAAAGTCTCCATTGTTTATTGCTCTCTCCAAGCTTACAAGTTTATTTCTTTTCATCTTATTCTTGAGAGGGATTATTATTATATTGTGAGGAAATAGTTGTCAGTATCCCAAATTGTAAATCTACTCTTTGAGAGAGTTGTGGTGTGTTATTATCAAACTCAAATACTTGTATCGGTTTGATCCTGCGTCGTTGAAAGGATTGAGTTTGCTCTTGAACTCGTAAAAAGAGCGGTGTACCGGTTTGGCTCTGATCCGTGGAAAGAGTCGGAAAAGTTCTTTATTCAAATTCCCAAGAGGCGCTTGGGGAGTGGAGTAGGTCGAGTTTGACCGAACCACTATAAAACTACGGTGTCATTTTCTCTAACTCTTTCCTATTTAATTTCAAGATTATTATTATGTTTATTGCATGTTCTACTTGATTATTGTTTTGACTTGAATTATTTTGCTTTAGTAATTATCATCTTCTACTTATTTGTAAAAAGTTTTATCATTAGAAAAATTAATCAAGTTTAAACACTTTTATCGTTAAAACCCTATTCACCCCCCCTCTAGGGTTGCCATACCGATCCAACAGAGCTTTGGTGGCAATTACAGGAACTAGAAGAGGTAGCATATACTACCTCAACGGAACCACAATAATTGGGCATGCTGCTGTGGCAAGTTCGAAAGAACAAGACATATCGAAATTATGGCACATGCGACTCGGGCATGCTGGTGAGAAGGCGCTTCAGACACTGGTGAACCAAGGAGTTCTTAAGGGTGCCACAACTGGAAGAATTGATTTCTGA

mRNA sequence

ATGCATAGTGAGTTTGAGATGAGTATGATGGGAGAACTCAGTTTCTTTCTTGGACTTCAAATCAAACAACTCAAGAATGGTATCTTCATCAATCAAGAGAAATACACTAAAGATTTGCTCAAAAGATTCAAGTTCAATGGAGGTAAGATTGCAAGAACTCCCATGAGCACATCCACTAAGCTTGACAAGGATGAAAAAGGGTTGCCATACCGATCCAACAGAGCTTTGGTGGCAATTACAGGAACTAGAAGAGGTAGCATATACTACCTCAACGGAACCACAATAATTGGGCATGCTGCTGTGGCAAGTTCGAAAGAACAAGACATATCGAAATTATGGCACATGCGACTCGGGCATGCTGGTGAGAAGGCGCTTCAGACACTGGTGAACCAAGGAGTTCTTAAGGGTGCCACAACTGGAAGAATTGATTTCTGA

Coding sequence (CDS)

ATGCATAGTGAGTTTGAGATGAGTATGATGGGAGAACTCAGTTTCTTTCTTGGACTTCAAATCAAACAACTCAAGAATGGTATCTTCATCAATCAAGAGAAATACACTAAAGATTTGCTCAAAAGATTCAAGTTCAATGGAGGTAAGATTGCAAGAACTCCCATGAGCACATCCACTAAGCTTGACAAGGATGAAAAAGGGTTGCCATACCGATCCAACAGAGCTTTGGTGGCAATTACAGGAACTAGAAGAGGTAGCATATACTACCTCAACGGAACCACAATAATTGGGCATGCTGCTGTGGCAAGTTCGAAAGAACAAGACATATCGAAATTATGGCACATGCGACTCGGGCATGCTGGTGAGAAGGCGCTTCAGACACTGGTGAACCAAGGAGTTCTTAAGGGTGCCACAACTGGAAGAATTGATTTCTGA

Protein sequence

MHSEFEMSMMGELSFFLGLQIKQLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTKLDKDEKGLPYRSNRALVAITGTRRGSIYYLNGTTIIGHAAVASSKEQDISKLWHMRLGHAGEKALQTLVNQGVLKGATTGRIDF

Homology

[Close]

BLAST of CmaCh11G006330 vs. ExPASy Swiss-Prot
Match: P93293 (Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana OX=3702 GN=AtMg00300 PE=4 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 8.0e-04
Identity = 20/66 (30.30%), Postives = 36/66 (54.55%), Query Frame = 0


Query: 79  ITGTRRGSIYYLNGTTIIGHAAVASSKEQDISKLWHMRLGHAGEKALQTLVNQGVLKGAT 138
           + G R  S+Y L G+   G + +A +  +D ++LWH RL H  ++ ++ LV +G L  + 
Sbjct: 39  LKGNRHDSLYILQGSVETGESNLAET-AKDETRLWHSRLAHMSQRGMELLVKKGFLDSSK 98

Query: 139 TGRIDF 145
              + F
Sbjct: 99  VSSLKF 103

[Close]

BLAST of CmaCh11G006330 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 8.0e-04
Identity = 22/61 (36.07%), Postives = 35/61 (57.38%), Query Frame = 0


Query: 1    MHSEFEMSMMGELSFFLGLQIKQLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTK 60
            +   F +    +L +FLG++ K++  G+ ++Q +YT DLL R      K   TPM+TS K
Sbjct: 1154 LSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPK 1213

Query: 61   L 62
            L
Sbjct: 1214 L 1214

[Close]

BLAST of CmaCh11G006330 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 45.1 bits (105), Expect = 5.7e-05
Identity = 20/66 (30.30%), Postives = 36/66 (54.55%), Query Frame = 0


Query: 79  ITGTRRGSIYYLNGTTIIGHAAVASSKEQDISKLWHMRLGHAGEKALQTLVNQGVLKGAT 138
           + G R  S+Y L G+   G + +A +  +D ++LWH RL H  ++ ++ LV +G L  + 
Sbjct: 39  LKGNRHDSLYILQGSVETGESNLAET-AKDETRLWHSRLAHMSQRGMELLVKKGFLDSSK 98

Query: 139 TGRIDF 145
              + F
Sbjct: 99  VSSLKF 103

[Close]

BLAST of CmaCh11G006330 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 2.2e-04
Identity = 23/61 (37.70%), Postives = 35/61 (57.38%), Query Frame = 0


Query: 1  MHSEFEMSMMGELSFFLGLQIKQLKNGIFINQEKYTKDLLKRFKFNGGKIARTPMSTSTK 60
          + S F M  +G + +FLG+QIK   +G+F++Q KY + +L     N G +   PMST   
Sbjct: 27 LSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILN----NAGMLDCKPMSTPLP 83

Query: 61 L 62
          L
Sbjct: 87 L 83

The following BLAST results are available for this feature:

BLAST of CmaCh11G006330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93293	8.0e-04	30.30	Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9ZT94	8.0e-04	36.07	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of CmaCh11G006330 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00300.1	5.7e-05	30.30	Gag-Pol-related retrotransposon family protein	[more]
ATMG00810.1	2.2e-04	37.70	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 87..138 e-value: 4.3E-11 score: 42.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G006330.1	CmaCh11G006330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane