CmaCh11G005830 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G005830
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cma_Chr11: 2804410 .. 2806932 (+)
RNA-Seq Expression	CmaCh11G005830
Synteny	CmaCh11G005830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTCTTCCTTTTGTCACTCCCACTTATCCGCTTGCTTCTCTCTACAGTACCAGAAAACTCCAGAACTCGCCCACCCACGCTGCGAAGTTGAATGAGAGTGCTAGGAACTTTCAAATCTCGTATAAATCTTACCTCACCCGGATATCTTCTCTATGCAAAGAAGGCGACCTTCGAGCAGCTGTGGACCTAGTTTCTAATTTGGAATTGCAGGGTATCACAATTGGACCTGACGTATATGGAGAACTTCTTCAGGGCTGCGTTTACGAGAGAGCTCTTTCGTTGGGTCAGCAAATCCACGGTCGAATTCTCAAGAATGGTGAGTTCATTGCAAAGAATGAGTACATCGAAACCAAATTGGTGATTTTCTATTCAAAATGCGACGAGTCAGAGATCGCCAACCGTTTGTTTCGCAAGCTGCGGGTACAGAACGAGTTTTCTTGGGCTGCTATTATGGGATTAAAATGTAGAATCGGCTTTAACGAAGAAGCTTTATTGTGTTTTTGTGAGATGCACGAAAATGGGCTATTCCTGGACAATTTTGTTATTCCAATTGCTTTGAAGGCTTCTGGCTCTCTGCAGTGGATTGGGTTTGGCAAAGCAATCCATGGCTACGCAGTCAAGATGGGTCTAGGTGGGTGTATCTTTGTTGCTAGTAGTCTTCTGGATATGTACGGTAAATGTGGGGTATGTGGAGATGCAAAGAAGGTGTTTGATAAAATTCCTGAGAAGAATATAGTAGCTTGGAATTCGATGATTGTTGATTTTACCCATAATGGACTGTATGAGGAAGCAATTGAAACGTTTTATGACATGAGGGTGGAAGGTGTTGAACCTACTCAAGTGACTCTATCAAGTTTTCTTTCAGCTTCAGCTAATTTAAGTCTGATCAATGAGGGTAAACAAGGTCACGCCCTAGCAGTGTTATCTGGACTGGAACTAACCAACATATTGGGTAGTTCGCTTATAAATTTTTATTCCAAGATTGGTTTGGTTGAGGACGCTGAACTGGTTTTCGGTGAAATGTTGGAGAAAGATGTAGTGACATGGAATTTGCTGGTCTCTGGTTATGTACATAATGGGCTGGTTGATCGGGCACTTGGTTTATGTCGCGTAATGCAATCGGAAAATTTGAGGTTTGATTCTGTGACCCTTGCTTCAATAATGGCTGCTGCTGCTGACTCGAGAAATTTGAAACTAGGGAAGGAAGGACATTCTTTTTGTGTTAGAAACAACCTTGAATCTGATGTTGCTGTTGCAAGTAGCATAGTAGATACGTATGCCAAATGTGGGAAATTGGAATGTGCAAGACGTGTTTTTCACTTAACTATAAAGAGAGATCTTATAATGTGGAATACTCTGTTGGCTGCCTATGCAGAGCAGGGTTGGAGTGGTGAGACATTAAAATTGTTTTATCAGATGCAGTTAGAAGGTCTGCCACCAAATTTGATATCCTGGAACTCTGTGATTTTGGGTCTCTTGAATAAAGGTGAAGTTAGTAAGGCTAAAGACATATTCTTGGAGATGCAGTCTCTTGGTGTCTGTCCTAATTTAGTTACTTGGACCACTCTCATATCTGGACTCGCACAGAATGGTCTTGGTGATGAAGCATTCCTTACATTCCAATCAATGCAAGAAGCTGGCATTAAACCCAACAGTTTGAGTATTAACTCGCTACTTTCAGCTTGCACAACTATGGCGTCTCTGCGACATGGAAGAGCAATTCATGGTTACATCACAAGACGTGAACTTTCACTATCAACACCGGTCTTATGCTCCTTGGTGAACATGTATGCCAAATGTGGTAGCATAAATCAAGCGAAGAGGATTTTTGATATGATATTGAAAAAGGAGTTGCCCATCTATAATGCAATGATCTCTGGCTATGCACTACATGGTCAAGCAGTGGAAGCTCTTTCACTCTTTAGACGTCTAAAAGAGGAATGTATAAAACCTGATGAAATAACCTTTACTTGTATTCTTTCTGCATGCAGTCATGCTGGACTTGTGACAGAAGGTTTAGAGCTTTTCATTGATATGGTTTCTAATCACAAAATAGTAGCACAAGCAGAGCATTATGGGTGTCTTGTTAGTATTCTGTCTAGGTGTCATAACTTGGACGAAGCTTTAAGACTTATTCTAGCGATGCCTTTTGAGCCTGATGCATTTATATTTGGATCTTTACTTGCTGCATGCAGAGAGCATCCAGACGTTGAACTCAAAGAACGCTTGTTCGAACGCTTGTTGAAATTGGAGCCAGATAATTCAGGAAATTATGTGGCACTGTCAAATGCATATTCTGCTGCTGGAATGTGGGACGAGGCATCAAAGGTGAGAGATCTGATGAAAGAAAGGGGTCTAAAGAAGACTCCTGGGCATAGCTTGATTCAAATTGGAAATGAAACACATGTATTTTTTGCTGGAGATAAGTCACACTCCAAGACAAAGGGAATTTACAAGATGTTGGCCCTCCTTAGAATAGAAATGCAAGTCACTAGATGTATACCTGTGATTAGTTAA

mRNA sequence

ATGGCTGCTCTTCCTTTTGTCACTCCCACTTATCCGCTTGCTTCTCTCTACAGTACCAGAAAACTCCAGAACTCGCCCACCCACGCTGCGAAGTTGAATGAGAGTGCTAGGAACTTTCAAATCTCGTATAAATCTTACCTCACCCGGATATCTTCTCTATGCAAAGAAGGCGACCTTCGAGCAGCTGTGGACCTAGTTTCTAATTTGGAATTGCAGGGTATCACAATTGGACCTGACGTATATGGAGAACTTCTTCAGGGCTGCGTTTACGAGAGAGCTCTTTCGTTGGGTCAGCAAATCCACGGTCGAATTCTCAAGAATGGTGAGTTCATTGCAAAGAATGAGTACATCGAAACCAAATTGGTGATTTTCTATTCAAAATGCGACGAGTCAGAGATCGCCAACCGTTTGTTTCGCAAGCTGCGGGTACAGAACGAGTTTTCTTGGGCTGCTATTATGGGATTAAAATGTAGAATCGGCTTTAACGAAGAAGCTTTATTGTGTTTTTGTGAGATGCACGAAAATGGGCTATTCCTGGACAATTTTGTTATTCCAATTGCTTTGAAGGCTTCTGGCTCTCTGCAGTGGATTGGGTTTGGCAAAGCAATCCATGGCTACGCAGTCAAGATGGGTCTAGGTGGGTGTATCTTTGTTGCTAGTAGTCTTCTGGATATGTACGGTAAATGTGGGGTATGTGGAGATGCAAAGAAGGTGTTTGATAAAATTCCTGAGAAGAATATAGTAGCTTGGAATTCGATGATTGTTGATTTTACCCATAATGGACTGTATGAGGAAGCAATTGAAACGTTTTATGACATGAGGGTGGAAGGTGTTGAACCTACTCAAGTGACTCTATCAAGTTTTCTTTCAGCTTCAGCTAATTTAAGTCTGATCAATGAGGGTAAACAAGGTCACGCCCTAGCAGTGTTATCTGGACTGGAACTAACCAACATATTGGGTAGTTCGCTTATAAATTTTTATTCCAAGATTGGTTTGGTTGAGGACGCTGAACTGGTTTTCGGTGAAATGTTGGAGAAAGATGTAGTGACATGGAATTTGCTGGTCTCTGGTTATGTACATAATGGGCTGGTTGATCGGGCACTTGGTTTATGTCGCGTAATGCAATCGGAAAATTTGAGGTTTGATTCTGTGACCCTTGCTTCAATAATGGCTGCTGCTGCTGACTCGAGAAATTTGAAACTAGGGAAGGAAGGACATTCTTTTTGTGTTAGAAACAACCTTGAATCTGATGTTGCTGTTGCAAGTAGCATAGTAGATACGTATGCCAAATGTGGGAAATTGGAATGTGCAAGACGTGTTTTTCACTTAACTATAAAGAGAGATCTTATAATGTGGAATACTCTGTTGGCTGCCTATGCAGAGCAGGGTTGGAGTGGTGAGACATTAAAATTGTTTTATCAGATGCAGTTAGAAGGTCTGCCACCAAATTTGATATCCTGGAACTCTGTGATTTTGGGTCTCTTGAATAAAGGTGAAGTTAGTAAGGCTAAAGACATATTCTTGGAGATGCAGTCTCTTGGTGTCTGTCCTAATTTAGTTACTTGGACCACTCTCATATCTGGACTCGCACAGAATGGTCTTGGTGATGAAGCATTCCTTACATTCCAATCAATGCAAGAAGCTGGCATTAAACCCAACAGTTTGAGTATTAACTCGCTACTTTCAGCTTGCACAACTATGGCGTCTCTGCGACATGGAAGAGCAATTCATGGTTACATCACAAGACGTGAACTTTCACTATCAACACCGGTCTTATGCTCCTTGGTGAACATGTATGCCAAATGTGGTAGCATAAATCAAGCGAAGAGGATTTTTGATATGATATTGAAAAAGGAGTTGCCCATCTATAATGCAATGATCTCTGGCTATGCACTACATGGTCAAGCAGTGGAAGCTCTTTCACTCTTTAGACGTCTAAAAGAGGAATGTATAAAACCTGATGAAATAACCTTTACTTGTATTCTTTCTGCATGCAGTCATGCTGGACTTGTGACAGAAGGTTTAGAGCTTTTCATTGATATGGTTTCTAATCACAAAATAGTAGCACAAGCAGAGCATTATGGGTGTCTTGTTAGTATTCTGTCTAGGTGTCATAACTTGGACGAAGCTTTAAGACTTATTCTAGCGATGCCTTTTGAGCCTGATGCATTTATATTTGGATCTTTACTTGCTGCATGCAGAGAGCATCCAGACGTTGAACTCAAAGAACGCTTGTTCGAACGCTTGTTGAAATTGGAGCCAGATAATTCAGGAAATTATGTGGCACTGTCAAATGCATATTCTGCTGCTGGAATGTGGGACGAGGCATCAAAGGTGAGAGATCTGATGAAAGAAAGGGGTCTAAAGAAGACTCCTGGGCATAGCTTGATTCAAATTGGAAATGAAACACATGTATTTTTTGCTGGAGATAAGTCACACTCCAAGACAAAGGGAATTTACAAGATGTTGGCCCTCCTTAGAATAGAAATGCAAGTCACTAGATGTATACCTGTGATTAGTTAA

Coding sequence (CDS)

ATGGCTGCTCTTCCTTTTGTCACTCCCACTTATCCGCTTGCTTCTCTCTACAGTACCAGAAAACTCCAGAACTCGCCCACCCACGCTGCGAAGTTGAATGAGAGTGCTAGGAACTTTCAAATCTCGTATAAATCTTACCTCACCCGGATATCTTCTCTATGCAAAGAAGGCGACCTTCGAGCAGCTGTGGACCTAGTTTCTAATTTGGAATTGCAGGGTATCACAATTGGACCTGACGTATATGGAGAACTTCTTCAGGGCTGCGTTTACGAGAGAGCTCTTTCGTTGGGTCAGCAAATCCACGGTCGAATTCTCAAGAATGGTGAGTTCATTGCAAAGAATGAGTACATCGAAACCAAATTGGTGATTTTCTATTCAAAATGCGACGAGTCAGAGATCGCCAACCGTTTGTTTCGCAAGCTGCGGGTACAGAACGAGTTTTCTTGGGCTGCTATTATGGGATTAAAATGTAGAATCGGCTTTAACGAAGAAGCTTTATTGTGTTTTTGTGAGATGCACGAAAATGGGCTATTCCTGGACAATTTTGTTATTCCAATTGCTTTGAAGGCTTCTGGCTCTCTGCAGTGGATTGGGTTTGGCAAAGCAATCCATGGCTACGCAGTCAAGATGGGTCTAGGTGGGTGTATCTTTGTTGCTAGTAGTCTTCTGGATATGTACGGTAAATGTGGGGTATGTGGAGATGCAAAGAAGGTGTTTGATAAAATTCCTGAGAAGAATATAGTAGCTTGGAATTCGATGATTGTTGATTTTACCCATAATGGACTGTATGAGGAAGCAATTGAAACGTTTTATGACATGAGGGTGGAAGGTGTTGAACCTACTCAAGTGACTCTATCAAGTTTTCTTTCAGCTTCAGCTAATTTAAGTCTGATCAATGAGGGTAAACAAGGTCACGCCCTAGCAGTGTTATCTGGACTGGAACTAACCAACATATTGGGTAGTTCGCTTATAAATTTTTATTCCAAGATTGGTTTGGTTGAGGACGCTGAACTGGTTTTCGGTGAAATGTTGGAGAAAGATGTAGTGACATGGAATTTGCTGGTCTCTGGTTATGTACATAATGGGCTGGTTGATCGGGCACTTGGTTTATGTCGCGTAATGCAATCGGAAAATTTGAGGTTTGATTCTGTGACCCTTGCTTCAATAATGGCTGCTGCTGCTGACTCGAGAAATTTGAAACTAGGGAAGGAAGGACATTCTTTTTGTGTTAGAAACAACCTTGAATCTGATGTTGCTGTTGCAAGTAGCATAGTAGATACGTATGCCAAATGTGGGAAATTGGAATGTGCAAGACGTGTTTTTCACTTAACTATAAAGAGAGATCTTATAATGTGGAATACTCTGTTGGCTGCCTATGCAGAGCAGGGTTGGAGTGGTGAGACATTAAAATTGTTTTATCAGATGCAGTTAGAAGGTCTGCCACCAAATTTGATATCCTGGAACTCTGTGATTTTGGGTCTCTTGAATAAAGGTGAAGTTAGTAAGGCTAAAGACATATTCTTGGAGATGCAGTCTCTTGGTGTCTGTCCTAATTTAGTTACTTGGACCACTCTCATATCTGGACTCGCACAGAATGGTCTTGGTGATGAAGCATTCCTTACATTCCAATCAATGCAAGAAGCTGGCATTAAACCCAACAGTTTGAGTATTAACTCGCTACTTTCAGCTTGCACAACTATGGCGTCTCTGCGACATGGAAGAGCAATTCATGGTTACATCACAAGACGTGAACTTTCACTATCAACACCGGTCTTATGCTCCTTGGTGAACATGTATGCCAAATGTGGTAGCATAAATCAAGCGAAGAGGATTTTTGATATGATATTGAAAAAGGAGTTGCCCATCTATAATGCAATGATCTCTGGCTATGCACTACATGGTCAAGCAGTGGAAGCTCTTTCACTCTTTAGACGTCTAAAAGAGGAATGTATAAAACCTGATGAAATAACCTTTACTTGTATTCTTTCTGCATGCAGTCATGCTGGACTTGTGACAGAAGGTTTAGAGCTTTTCATTGATATGGTTTCTAATCACAAAATAGTAGCACAAGCAGAGCATTATGGGTGTCTTGTTAGTATTCTGTCTAGGTGTCATAACTTGGACGAAGCTTTAAGACTTATTCTAGCGATGCCTTTTGAGCCTGATGCATTTATATTTGGATCTTTACTTGCTGCATGCAGAGAGCATCCAGACGTTGAACTCAAAGAACGCTTGTTCGAACGCTTGTTGAAATTGGAGCCAGATAATTCAGGAAATTATGTGGCACTGTCAAATGCATATTCTGCTGCTGGAATGTGGGACGAGGCATCAAAGGTGAGAGATCTGATGAAAGAAAGGGGTCTAAAGAAGACTCCTGGGCATAGCTTGATTCAAATTGGAAATGAAACACATGTATTTTTTGCTGGAGATAAGTCACACTCCAAGACAAAGGGAATTTACAAGATGTTGGCCCTCCTTAGAATAGAAATGCAAGTCACTAGATGTATACCTGTGATTAGTTAA

Protein sequence

MAALPFVTPTYPLASLYSTRKLQNSPTHAAKLNESARNFQISYKSYLTRISSLCKEGDLRAAVDLVSNLELQGITIGPDVYGELLQGCVYERALSLGQQIHGRILKNGEFIAKNEYIETKLVIFYSKCDESEIANRLFRKLRVQNEFSWAAIMGLKCRIGFNEEALLCFCEMHENGLFLDNFVIPIALKASGSLQWIGFGKAIHGYAVKMGLGGCIFVASSLLDMYGKCGVCGDAKKVFDKIPEKNIVAWNSMIVDFTHNGLYEEAIETFYDMRVEGVEPTQVTLSSFLSASANLSLINEGKQGHALAVLSGLELTNILGSSLINFYSKIGLVEDAELVFGEMLEKDVVTWNLLVSGYVHNGLVDRALGLCRVMQSENLRFDSVTLASIMAAAADSRNLKLGKEGHSFCVRNNLESDVAVASSIVDTYAKCGKLECARRVFHLTIKRDLIMWNTLLAAYAEQGWSGETLKLFYQMQLEGLPPNLISWNSVILGLLNKGEVSKAKDIFLEMQSLGVCPNLVTWTTLISGLAQNGLGDEAFLTFQSMQEAGIKPNSLSINSLLSACTTMASLRHGRAIHGYITRRELSLSTPVLCSLVNMYAKCGSINQAKRIFDMILKKELPIYNAMISGYALHGQAVEALSLFRRLKEECIKPDEITFTCILSACSHAGLVTEGLELFIDMVSNHKIVAQAEHYGCLVSILSRCHNLDEALRLILAMPFEPDAFIFGSLLAACREHPDVELKERLFERLLKLEPDNSGNYVALSNAYSAAGMWDEASKVRDLMKERGLKKTPGHSLIQIGNETHVFFAGDKSHSKTKGIYKMLALLRIEMQVTRCIPVIS

Homology

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BLAST of CmaCh11G005830 vs. ExPASy Swiss-Prot
Match: Q9FM64 (Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR21 PE=2 SV=1)

HSP 1 Score: 922.5 bits (2383), Expect = 3.3e-267
Identity = 457/833 (54.86%), Postives = 612/833 (73.47%), Query Frame = 0


Query: 1   MAALPFVTPTYPLASLYSTRKLQNSPTHAAKLNESARNFQISYKSYLTRISSLCKEGDLR 60
           MA+LPF   T P    +S     +S  H    +E A +   S  SY  R+SSLCK G+++
Sbjct: 1   MASLPF--NTIPNKVPFSVSSKPSSKHH----DEQAHS--PSSTSYFHRVSSLCKNGEIK 60

Query: 61  AAVDLVSNLELQGITIGPDVYGELLQGCVYERALSLGQQIHGRILKNGEFIAKNEYIETK 120
            A+ LV+ ++ + + IGP++YGE+LQGCVYER LS G+QIH RILKNG+F A+NEYIETK
Sbjct: 61  EALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLSTGKQIHARILKNGDFYARNEYIETK 120

Query: 121 LVIFYSKCDESEIANRLFRKLRVQNEFSWAAIMGLKCRIGFNEEALLCFCEMHENGLFLD 180
           LVIFY+KCD  EIA  LF KLRV+N FSWAAI+G+KCRIG  E AL+ F EM EN +F D
Sbjct: 121 LVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPD 180

Query: 181 NFVIPIALKASGSLQWIGFGKAIHGYAVKMGLGGCIFVASSLLDMYGKCGVCGDAKKVFD 240
           NFV+P   KA G+L+W  FG+ +HGY VK GL  C+FVASSL DMYGKCGV  DA KVFD
Sbjct: 181 NFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFD 240

Query: 241 KIPEKNIVAWNSMIVDFTHNGLYEEAIETFYDMRVEGVEPTQVTLSSFLSASANLSLINE 300
           +IP++N VAWN+++V +  NG  EEAI  F DMR +GVEPT+VT+S+ LSASAN+  + E
Sbjct: 241 EIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEE 300

Query: 301 GKQGHALAVLSGLELTNILGSSLINFYSKIGLVEDAELVFGEMLEKDVVTWNLLVSGYVH 360
           GKQ HA+A+++G+EL NILG+SL+NFY K+GL+E AE+VF  M EKDVVTWNL++SGYV 
Sbjct: 301 GKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYVQ 360

Query: 361 NGLVDRALGLCRVMQSENLRFDSVTLASIMAAAADSRNLKLGKEGHSFCVRNNLESDVAV 420
            GLV+ A+ +C++M+ E L++D VTLA++M+AAA + NLKLGKE   +C+R++ ESD+ +
Sbjct: 361 QGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVL 420

Query: 421 ASSIVDTYAKCGKLECARRVFHLTIKRDLIMWNTLLAAYAEQGWSGETLKLFYQMQLEGL 480
           AS+++D YAKCG +  A++VF  T+++DLI+WNTLLAAYAE G SGE L+LFY MQLEG+
Sbjct: 421 ASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGV 480

Query: 481 PPNLISWNSVILGLLNKGEVSKAKDIFLEMQSLGVCPNLVTWTTLISGLAQNGLGDEAFL 540
           PPN+I+WN +IL LL  G+V +AKD+FL+MQS G+ PNL++WTT+++G+ QNG  +EA L
Sbjct: 481 PPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAIL 540

Query: 541 TFQSMQEAGIKPNSLSINSLLSACTTMASLRHGRAIHGYITRR-ELSLSTPVLCSLVNMY 600
             + MQE+G++PN+ SI   LSAC  +ASL  GR IHGYI R  + S    +  SLV+MY
Sbjct: 541 FLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGYIIRNLQHSSLVSIETSLVDMY 600

Query: 601 AKCGSINQAKRIFDMILKKELPIYNAMISGYALHGQAVEALSLFRRLKEECIKPDEITFT 660
           AKCG IN+A+++F   L  ELP+ NAMIS YAL+G   EA++L+R L+   +KPD IT T
Sbjct: 601 AKCGDINKAEKVFGSKLYSELPLSNAMISAYALYGNLKEAIALYRSLEGVGLKPDNITIT 660

Query: 661 CILSACSHAGLVTEGLELFIDMVSNHKIVAQAEHYGCLVSILSRCHNLDEALRLILAMPF 720
            +LSAC+HAG + + +E+F D+VS   +    EHYG +V +L+     ++ALRLI  MPF
Sbjct: 661 NVLSACNHAGDINQAIEIFTDIVSKRSMKPCLEHYGLMVDLLASAGETEKALRLIEEMPF 720

Query: 721 EPDAFIFGSLLAACREHPDVELKERLFERLLKLEPDNSGNYVALSNAYSAAGMWDEASKV 780
           +PDA +  SL+A+C +    EL + L  +LL+ EP+NSGNYV +SNAY+  G WDE  K+
Sbjct: 721 KPDARMIQSLVASCNKQRKTELVDYLSRKLLESEPENSGNYVTISNAYAVEGSWDEVVKM 780

Query: 781 RDLMKERGLKKTPGHSLIQIGNE--THVFFAGDKSHSKTKGIYKMLALLRIEM 831
           R++MK +GLKK PG S IQI  E   HVF A DK+H++   I  MLALL  +M
Sbjct: 781 REMMKAKGLKKKPGCSWIQITGEEGVHVFVANDKTHTRINEIQMMLALLLYDM 825

[Close]

BLAST of CmaCh11G005830 vs. ExPASy Swiss-Prot
Match: Q9SS83 (Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E88 PE=2 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 8.5e-122
Identity = 278/875 (31.77%), Postives = 434/875 (49.60%), Query Frame = 0


Query: 42  SYKSYLTRISSLCKEGD-LRAAVDLVSNLELQGITIGPDVYGELLQGCVYERALSLGQQI 101
           ++ S L+  SS+ K G  LR+ V L  N     I      +  +L  C  E  +  G+QI
Sbjct: 127 AWNSMLSMYSSIGKPGKVLRSFVSLFEN----QIFPNKFTFSIVLSTCARETNVEFGRQI 186

Query: 102 HGRILKNGEFIAKNEYIETKLVIFYSKCDESEIANRLFRKLRVQNEFSWAAIMGLKCRIG 161
           H  ++K G  + +N Y    LV  Y+KCD    A R+F  +   N   W  +     + G
Sbjct: 187 HCSMIKMG--LERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAG 246

Query: 162 FNEEALLCFCEMHENGLFLDN--FVIPI-------------------------------- 221
             EEA+L F  M + G   D+  FV  I                                
Sbjct: 247 LPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMIS 306

Query: 222 --------------------------------ALKASGSLQWIGFGKAIHGYAVKMGLGG 281
                                            L A G +  +  G  +H  A+K+GL  
Sbjct: 307 GHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLAS 366

Query: 282 CIFVASSLLDMYGKCGVCGDAKKVFDKIPEKNIVAWNSMIVDFTHNGLYEEAIETFYDMR 341
            I+V SSL+ MY KC     A KVF+ + EKN V WN+MI  + HNG   + +E F DM+
Sbjct: 367 NIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMK 426

Query: 342 VEGVEPTQVTLSSFLSASANLSLINEGKQGHALAVLSGLELTNILGSSLINFYSKIGLVE 401
             G      T +S LS  A    +  G Q H++ +   L     +G++L++ Y+K G +E
Sbjct: 427 SSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALE 486

Query: 402 DAELVFGEMLEKDVVTWNLLVSGYVHNGLVDRALGLCRVMQSENLRFDSVTLASIMAAAA 461
           DA  +F  M ++D VTWN ++  YV +     A  L + M    +  D   LAS + A  
Sbjct: 487 DARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACT 546

Query: 462 DSRNLKLGKEGHSFCVRNNLESDVAVASSIVDTYAKCGKLECARRVFHLTIKRDLIMWNT 521
               L  GK+ H   V+  L+ D+   SS++D Y+KCG ++ AR+VF    +  ++  N 
Sbjct: 547 HVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNA 606

Query: 522 LLAAYAEQGWSGETLKLFYQMQLEGLPPNLISWNSVI----------LGLLNKGEVSK-- 581
           L+A Y++     E + LF +M   G+ P+ I++ +++          LG    G+++K  
Sbjct: 607 LIAGYSQNNLE-EAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRG 666

Query: 582 --AKDIFLEMQSLGVCPN-------------------LVTWTTLISGLAQNGLGDEAFLT 641
             ++  +L +  LG+  N                   +V WT ++SG +QNG  +EA   
Sbjct: 667 FSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKF 726

Query: 642 FQSMQEAGIKPNSLSINSLLSACTTMASLRHGRAIHGYITRRELSLSTPVLCSLVNMYAK 701
           ++ M+  G+ P+  +  ++L  C+ ++SLR GRAIH  I      L      +L++MYAK
Sbjct: 727 YKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAK 786

Query: 702 CGSINQAKRIFD-MILKKELPIYNAMISGYALHGQAVEALSLFRRLKEECIKPDEITFTC 761
           CG +  + ++FD M  +  +  +N++I+GYA +G A +AL +F  +++  I PDEITF  
Sbjct: 787 CGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLG 846

Query: 762 ILSACSHAGLVTEGLELFIDMVSNHKIVAQAEHYGCLVSILSRCHNLDEALRLILAMPFE 816
           +L+ACSHAG V++G ++F  M+  + I A+ +H  C+V +L R   L EA   I A   +
Sbjct: 847 VLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLK 906

[Close]

BLAST of CmaCh11G005830 vs. ExPASy Swiss-Prot
Match: Q9FXH1 (Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana OX=3702 GN=DYW7 PE=2 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 9.4e-121
Identity = 260/821 (31.67%), Postives = 427/821 (52.01%), Query Frame = 0


Query: 9   PTYPLASL-YST-RKLQNSPTHAAKLNESARNFQISYKSYL---TRISSLCKEGDLRAAV 68
           P++P   L Y T  K++NSP    K  +   +F    +  +    +   LC+ G L  A 
Sbjct: 7   PSFPKTFLNYQTPAKVENSPELHPKSRKKNLSFTKKKEPNIIPDEQFDYLCRNGSLLEAE 66

Query: 69  DLVSNLELQGITIGPDVYGELLQGCVYERALSLGQQIHGRILKNGEFIAKNEYIETKLVI 128
             + +L  QG  +    Y +LL+ C+   ++ LG+ +H R    G F   + ++ETKL+ 
Sbjct: 67  KALDSLFQQGSKVKRSTYLKLLESCIDSGSIHLGRILHARF---GLFTEPDVFVETKLLS 126

Query: 129 FYSKCDESEIANRLFRKLRVQNEFSWAAIMGLKCRIGFNEEALLCFCEMHENGLFLDNFV 188
            Y+KC     A ++F  +R +N F+W+A++G   R     E    F  M ++G+  D+F+
Sbjct: 127 MYAKCGCIADARKVFDSMRERNLFTWSAMIGAYSRENRWREVAKLFRLMMKDGVLPDDFL 186

Query: 189 IPIALKASGSLQWIGFGKAIHGYAVKMGLGGCIFVASSLLDMYGKCGVCGDAKKVFDKIP 248
            P  L+   +   +  GK IH   +K+G+  C+ V++S+L +Y KCG    A K F ++ 
Sbjct: 187 FPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMR 246

Query: 249 EKNIVAWNSMIVDFTHNGLYEEAIETFYDMRVEGVEPTQVTLSSFLSASANLSLINEGKQ 308
           E++++AWNS+++ +  NG +EEA+E   +M  EG+ P  VT +  +     L     GK 
Sbjct: 247 ERDVIAWNSVLLAYCQNGKHEEAVELVKEMEKEGISPGLVTWNILIGGYNQL-----GKC 306

Query: 309 GHALAVLSGLELTNILGSSLINFYSKIGLVEDAELVFGEMLEKDVVTWNLLVSGYVHNGL 368
             A+ ++  +E                         FG  +  DV TW  ++SG +HNG+
Sbjct: 307 DAAMDLMQKME------------------------TFG--ITADVFTWTAMISGLIHNGM 366

Query: 369 VDRALGLCRVMQSENLRFDSVTLASIMAAAADSRNLKLGKEGHSFCVRNNLESDVAVASS 428
             +AL + R M    +  ++VT+ S ++A +  + +  G E HS  V+     DV V +S
Sbjct: 367 RYQALDMFRKMFLAGVVPNAVTIMSAVSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNS 426

Query: 429 IVDTYAKCGKLECARRVFHLTIKRDLIMWNTLLAAYAEQGWSGETLKLFYQMQLEGLPPN 488
           +VD Y+KCGKLE AR+VF     +D+  WN+++  Y + G+ G+  +LF +MQ   L PN
Sbjct: 427 LVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPN 486

Query: 489 LISWNSVILGLLNKGEVSKAKDIFLEMQSLG-VCPNLVTWTTLISGLAQNGLGDEAFLTF 548
           +I+WN++I G +  G+  +A D+F  M+  G V  N  TW  +I+G  QNG  DEA   F
Sbjct: 487 IITWNTMISGYIKNGDEGEAMDLFQRMEKDGKVQRNTATWNLIIAGYIQNGKKDEALELF 546

Query: 549 QSMQEAGIKPNSLSINSLLSACTTMASLRHGRAIHGYITRRELSLSTPVLCSLVNMYAKC 608
           + MQ +   PNS++I SLL AC  +   +  R IHG + RR L     V  +L + YAK 
Sbjct: 547 RKMQFSRFMPNSVTILSLLPACANLLGAKMVREIHGCVLRRNLDAIHAVKNALTDTYAKS 606

Query: 609 GSINQAKRIFDMILKKELPIYNAMISGYALHGQAVEALSLFRRLKEECIKPDEITFTCIL 668
           G I  ++ IF  +  K++  +N++I GY LHG    AL+LF ++K + I P+  T + I+
Sbjct: 607 GDIEYSRTIFLGMETKDIITWNSLIGGYVLHGSYGPALALFNQMKTQGITPNRGTLSSII 666

Query: 669 SACSHAGLVTEGLELFIDMVSNHKIVAQAEHYGCLVSILSRCHNLDEALRLILAMPFEPD 728
            A    G V EG ++F  + +++ I+   EH   +V +  R + L+EAL+ I  M  + +
Sbjct: 667 LAHGLMGNVDEGKKVFYSIANDYHIIPALEHCSAMVYLYGRANRLEEALQFIQEMNIQSE 726

Query: 729 AFIFGSLLAACREHPDVELKERLFERLLKLEPDNSGNYVALSNAYSAAGMWDEASKVRDL 788
             I+ S L  CR H D+++     E L  LEP+N+     +S  Y+       + +    
Sbjct: 727 TPIWESFLTGCRIHGDIDMAIHAAENLFSLEPENTATESIVSQIYALGAKLGRSLEGNKP 786

Query: 789 MKERGLKKTPGHSLIQIGNETHVFFAGDKSHSKTKGIYKML 824
            ++  LKK  G S I++ N  H F  GD+S   T  +Y ++
Sbjct: 787 RRDNLLKKPLGQSWIEVRNLIHTFTTGDQSKLCTDVLYPLV 793

[Close]

BLAST of CmaCh11G005830 vs. ExPASy Swiss-Prot
Match: Q9M1V3 (Pentatricopeptide repeat-containing protein At3g63370, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H83 PE=2 SV=2)

HSP 1 Score: 428.3 bits (1100), Expect = 2.0e-118
Identity = 254/778 (32.65%), Postives = 414/778 (53.21%), Query Frame = 0


Query: 79  DVYGELLQGCVYERALSLGQQIHGRILKNGEFIAKNEYIETKLVIFYSKCDESEIANRLF 138
           + +  +L+ C   RA+S G+Q+H RI K      + +++  KLV  Y KC   + A ++F
Sbjct: 81  EAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSF-ELDFLAGKLVFMYGKCGSLDDAEKVF 140

Query: 139 RKLRVQNEFSWAAIMGLKCRIGFNEEALLCFCEMHENGLFLDNFVIPIALKASGSLQWIG 198
            ++  +  F+W  ++G     G    AL  +  M   G+ L     P  LKA   L+ I 
Sbjct: 141 DEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIR 200

Query: 199 FGKAIHGYAVKMGLGGCIFVASSLLDMYGKCGVCGDAKKVFDKIPEK-NIVAWNSMIVDF 258
            G  +H   VK+G     F+ ++L+ MY K      A+++FD   EK + V WNS++  +
Sbjct: 201 SGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSY 260

Query: 259 THNGLYEEAIETFYDMRVEGVEPTQVTLSSFLSASANLSLINEGKQGHALAVLSGLELTN 318
           + +G   E +E F +M + G  P   T+ S L+A    S    GK+ HA  + S    + 
Sbjct: 261 STSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSE 320

Query: 319 I-LGSSLINFYSKIGLVEDAELVFGEMLEKDVVTWNLLVSGYVHNGLVDRALGLCRVMQS 378
           + + ++LI  Y++ G +  AE +  +M   DVVTWN L+ GYV N +   AL     M +
Sbjct: 321 LYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIA 380

Query: 379 ENLRFDSVTLASIMAAAADSRNLKLGKEGHSFCVRNNLESDVAVASSIVDTYAKCGKLEC 438
              + D V++ SI+AA+    NL  G E H++ +++  +S++ V ++++D Y+KC     
Sbjct: 381 AGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCY 440

Query: 439 ARRVFHLTIKRDLIMWNTLLAAYAEQGWSGETLKLF-----YQMQLEGLPPNLISWNSVI 498
             R F     +DLI W T++A YA+     E L+LF      +M+++ +    I   S +
Sbjct: 441 MGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSV 500

Query: 499 L----------------GLLNKGEVSKAKDIFLEMQSLGVC---------PNLVTWTTLI 558
           L                GLL+    ++  D++ + +++G            ++V+WT++I
Sbjct: 501 LKSMLIVKEIHCHILRKGLLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMI 560

Query: 559 SGLAQNGLGDEAFLTFQSMQEAGIKPNSLSINSLLSACTTMASLRHGRAIHGYITRRELS 618
           S  A NG   EA   F+ M E G+  +S+++  +LSA  ++++L  GR IH Y+ R+   
Sbjct: 561 SSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFC 620

Query: 619 LSTPVLCSLVNMYAKCGSINQAKRIFDMILKKELPIYNAMISGYALHGQAVEALSLFRRL 678
           L   +  ++V+MYA CG +  AK +FD I +K L  Y +MI+ Y +HG    A+ LF ++
Sbjct: 621 LEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKM 680

Query: 679 KEECIKPDEITFTCILSACSHAGLVTEGLELFIDMVSNHKIVAQAEHYGCLVSILSRCHN 738
           + E + PD I+F  +L ACSHAGL+ EG      M   +++    EHY CLV +L R + 
Sbjct: 681 RHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANC 740

Query: 739 LDEALRLILAMPFEPDAFIFGSLLAACREHPDVELKERLFERLLKLEPDNSGNYVALSNA 798
           + EA   +  M  EP A ++ +LLAACR H + E+ E   +RLL+LEP N GN V +SN 
Sbjct: 741 VVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNV 800

Query: 799 YSAAGMWDEASKVRDLMKERGLKKTPGHSLIQIGNETHVFFAGDKSHSKTKGIYKMLA 825
           ++  G W++  KVR  MK  G++K PG S I++  + H F A DKSH ++K IY+ L+
Sbjct: 801 FAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLS 857

[Close]

BLAST of CmaCh11G005830 vs. ExPASy Swiss-Prot
Match: Q0WN60 (Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H8 PE=2 SV=2)

HSP 1 Score: 424.5 bits (1090), Expect = 2.8e-117
Identity = 266/867 (30.68%), Postives = 440/867 (50.75%), Query Frame = 0


Query: 17  YSTRKLQNSPTHAAKLNESARNFQISYKSYLTRISSLCKEGDL----RAAVDLVSNLE-- 76
           Y   + ++S   A   + S  +   +   +L RIS+ C+ GDL    R   + V + E  
Sbjct: 17  YRRSRKESSFPRAVYNSNSISSNSTNANHFLRRISNFCETGDLDKSFRTVQEFVGDDESS 76

Query: 77  LQGITIGPDVYGELLQGCVYERALSLGQQIHGRILKNGEFIAKNEYIETKLVIFYSKCDE 136
                +  +  G LLQ     + + +G++IH +++     +  ++ + T+++  Y+ C  
Sbjct: 77  SDAFLLVREALGLLLQASGKRKDIEMGRKIH-QLVSGSTRLRNDDVLCTRIITMYAMCGS 136

Query: 137 SEIANRLFRKLRVQNEFSWAAIMGLKCRIGFNEEALLCFCEM-HENGLFLDNFVIPIALK 196
            + +  +F  LR +N F W A++    R    +E L  F EM     L  D+F  P  +K
Sbjct: 137 PDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIK 196

Query: 197 ASGSLQWIGFGKAIHGYAVKMGLGGCIFVASSLLDMYGKCGVCGDAKKVFDKIPEKNIVA 256
           A   +  +G G A+HG  VK GL   +FV ++L+  YG  G   DA ++FD +PE+N+V+
Sbjct: 197 ACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVS 256

Query: 257 WNSMIVDFTHNGLYEEAIETFYDMRVEGVE----PTQVTLSSFLSASANLSLINEGKQGH 316
           WNSMI  F+ NG  EE+     +M  E  +    P   TL + L   A    I  GK  H
Sbjct: 257 WNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVH 316

Query: 317 ALAVLSGLELTNILGSSLINFYSKIGLVEDAELVFGEMLEKDVVTWNLLVSGYVHNGLVD 376
             AV   L+   +L ++L++ YSK G + +A+++F     K+VV+WN +V G+   G   
Sbjct: 317 GWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTH 376

Query: 377 RALGLCRVMQS--ENLRFDSVTLASIMAAAADSRNLKLGKEGHSFCVRNNLESDVAVASS 436
               + R M +  E+++ D VT+ + +        L   KE H + ++     +  VA++
Sbjct: 377 GTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANA 436

Query: 437 IVDTYAKCGKLECARRVFHLTIKRDLIMWNTLLAAYAEQGWSGETLKLFYQMQLEGLPP- 496
            V +YAKCG L  A+RVFH    + +  WN L+  +A+      +L    QM++ GL P 
Sbjct: 437 FVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPD 496

Query: 497 ----------------------------------NLISWNSVILGLLNKGEVSKAKDIFL 556
                                             +L  + SV+   ++ GE+   + +F 
Sbjct: 497 SFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFD 556

Query: 557 EMQSLGVCPNLVTWTTLISGLAQNGLGDEAFLTFQSMQEAGIKPNSLSINSLLSACTTMA 616
            M+      +LV+W T+I+G  QNG  D A   F+ M   GI+   +S+  +  AC+ + 
Sbjct: 557 AMED----KSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLP 616

Query: 617 SLRHGRAIHGYITRRELSLSTPVLCSLVNMYAKCGSINQAKRIFDMILKKELPIYNAMIS 676
           SLR GR  H Y  +  L     + CSL++MYAK GSI Q+ ++F+ + +K    +NAMI 
Sbjct: 617 SLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIM 676

Query: 677 GYALHGQAVEALSLFRRLKEECIKPDEITFTCILSACSHAGLVTEGLELFIDMVSNHKIV 736
           GY +HG A EA+ LF  ++     PD++TF  +L+AC+H+GL+ EGL     M S+  + 
Sbjct: 677 GYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLK 736

Query: 737 AQAEHYGCLVSILSRCHNLDEALRLIL-AMPFEPDAFIFGSLLAACREHPDVELKERLFE 796
              +HY C++ +L R   LD+ALR++   M  E D  I+ SLL++CR H ++E+ E++  
Sbjct: 737 PNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAA 796

Query: 797 RLLKLEPDNSGNYVALSNAYSAAGMWDEASKVRDLMKERGLKKTPGHSLIQIGNETHVFF 835
           +L +LEP+   NYV LSN Y+  G W++  KVR  M E  L+K  G S I++  +   F 
Sbjct: 797 KLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFV 856

[Close]

BLAST of CmaCh11G005830 vs. TAIR 10
Match: AT5G55740.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 922.5 bits (2383), Expect = 2.4e-268
Identity = 457/833 (54.86%), Postives = 612/833 (73.47%), Query Frame = 0


Query: 1   MAALPFVTPTYPLASLYSTRKLQNSPTHAAKLNESARNFQISYKSYLTRISSLCKEGDLR 60
           MA+LPF   T P    +S     +S  H    +E A +   S  SY  R+SSLCK G+++
Sbjct: 1   MASLPF--NTIPNKVPFSVSSKPSSKHH----DEQAHS--PSSTSYFHRVSSLCKNGEIK 60

Query: 61  AAVDLVSNLELQGITIGPDVYGELLQGCVYERALSLGQQIHGRILKNGEFIAKNEYIETK 120
            A+ LV+ ++ + + IGP++YGE+LQGCVYER LS G+QIH RILKNG+F A+NEYIETK
Sbjct: 61  EALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLSTGKQIHARILKNGDFYARNEYIETK 120

Query: 121 LVIFYSKCDESEIANRLFRKLRVQNEFSWAAIMGLKCRIGFNEEALLCFCEMHENGLFLD 180
           LVIFY+KCD  EIA  LF KLRV+N FSWAAI+G+KCRIG  E AL+ F EM EN +F D
Sbjct: 121 LVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPD 180

Query: 181 NFVIPIALKASGSLQWIGFGKAIHGYAVKMGLGGCIFVASSLLDMYGKCGVCGDAKKVFD 240
           NFV+P   KA G+L+W  FG+ +HGY VK GL  C+FVASSL DMYGKCGV  DA KVFD
Sbjct: 181 NFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFD 240

Query: 241 KIPEKNIVAWNSMIVDFTHNGLYEEAIETFYDMRVEGVEPTQVTLSSFLSASANLSLINE 300
           +IP++N VAWN+++V +  NG  EEAI  F DMR +GVEPT+VT+S+ LSASAN+  + E
Sbjct: 241 EIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEE 300

Query: 301 GKQGHALAVLSGLELTNILGSSLINFYSKIGLVEDAELVFGEMLEKDVVTWNLLVSGYVH 360
           GKQ HA+A+++G+EL NILG+SL+NFY K+GL+E AE+VF  M EKDVVTWNL++SGYV 
Sbjct: 301 GKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYVQ 360

Query: 361 NGLVDRALGLCRVMQSENLRFDSVTLASIMAAAADSRNLKLGKEGHSFCVRNNLESDVAV 420
            GLV+ A+ +C++M+ E L++D VTLA++M+AAA + NLKLGKE   +C+R++ ESD+ +
Sbjct: 361 QGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVL 420

Query: 421 ASSIVDTYAKCGKLECARRVFHLTIKRDLIMWNTLLAAYAEQGWSGETLKLFYQMQLEGL 480
           AS+++D YAKCG +  A++VF  T+++DLI+WNTLLAAYAE G SGE L+LFY MQLEG+
Sbjct: 421 ASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGV 480

Query: 481 PPNLISWNSVILGLLNKGEVSKAKDIFLEMQSLGVCPNLVTWTTLISGLAQNGLGDEAFL 540
           PPN+I+WN +IL LL  G+V +AKD+FL+MQS G+ PNL++WTT+++G+ QNG  +EA L
Sbjct: 481 PPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAIL 540

Query: 541 TFQSMQEAGIKPNSLSINSLLSACTTMASLRHGRAIHGYITRR-ELSLSTPVLCSLVNMY 600
             + MQE+G++PN+ SI   LSAC  +ASL  GR IHGYI R  + S    +  SLV+MY
Sbjct: 541 FLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGYIIRNLQHSSLVSIETSLVDMY 600

Query: 601 AKCGSINQAKRIFDMILKKELPIYNAMISGYALHGQAVEALSLFRRLKEECIKPDEITFT 660
           AKCG IN+A+++F   L  ELP+ NAMIS YAL+G   EA++L+R L+   +KPD IT T
Sbjct: 601 AKCGDINKAEKVFGSKLYSELPLSNAMISAYALYGNLKEAIALYRSLEGVGLKPDNITIT 660

Query: 661 CILSACSHAGLVTEGLELFIDMVSNHKIVAQAEHYGCLVSILSRCHNLDEALRLILAMPF 720
            +LSAC+HAG + + +E+F D+VS   +    EHYG +V +L+     ++ALRLI  MPF
Sbjct: 661 NVLSACNHAGDINQAIEIFTDIVSKRSMKPCLEHYGLMVDLLASAGETEKALRLIEEMPF 720

Query: 721 EPDAFIFGSLLAACREHPDVELKERLFERLLKLEPDNSGNYVALSNAYSAAGMWDEASKV 780
           +PDA +  SL+A+C +    EL + L  +LL+ EP+NSGNYV +SNAY+  G WDE  K+
Sbjct: 721 KPDARMIQSLVASCNKQRKTELVDYLSRKLLESEPENSGNYVTISNAYAVEGSWDEVVKM 780

Query: 781 RDLMKERGLKKTPGHSLIQIGNE--THVFFAGDKSHSKTKGIYKMLALLRIEM 831
           R++MK +GLKK PG S IQI  E   HVF A DK+H++   I  MLALL  +M
Sbjct: 781 REMMKAKGLKKKPGCSWIQITGEEGVHVFVANDKTHTRINEIQMMLALLLYDM 825

[Close]

BLAST of CmaCh11G005830 vs. TAIR 10
Match: AT3G09040.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 439.5 bits (1129), Expect = 6.1e-123
Identity = 278/875 (31.77%), Postives = 434/875 (49.60%), Query Frame = 0


Query: 42  SYKSYLTRISSLCKEGD-LRAAVDLVSNLELQGITIGPDVYGELLQGCVYERALSLGQQI 101
           ++ S L+  SS+ K G  LR+ V L  N     I      +  +L  C  E  +  G+QI
Sbjct: 127 AWNSMLSMYSSIGKPGKVLRSFVSLFEN----QIFPNKFTFSIVLSTCARETNVEFGRQI 186

Query: 102 HGRILKNGEFIAKNEYIETKLVIFYSKCDESEIANRLFRKLRVQNEFSWAAIMGLKCRIG 161
           H  ++K G  + +N Y    LV  Y+KCD    A R+F  +   N   W  +     + G
Sbjct: 187 HCSMIKMG--LERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAG 246

Query: 162 FNEEALLCFCEMHENGLFLDN--FVIPI-------------------------------- 221
             EEA+L F  M + G   D+  FV  I                                
Sbjct: 247 LPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMIS 306

Query: 222 --------------------------------ALKASGSLQWIGFGKAIHGYAVKMGLGG 281
                                            L A G +  +  G  +H  A+K+GL  
Sbjct: 307 GHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLAS 366

Query: 282 CIFVASSLLDMYGKCGVCGDAKKVFDKIPEKNIVAWNSMIVDFTHNGLYEEAIETFYDMR 341
            I+V SSL+ MY KC     A KVF+ + EKN V WN+MI  + HNG   + +E F DM+
Sbjct: 367 NIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMK 426

Query: 342 VEGVEPTQVTLSSFLSASANLSLINEGKQGHALAVLSGLELTNILGSSLINFYSKIGLVE 401
             G      T +S LS  A    +  G Q H++ +   L     +G++L++ Y+K G +E
Sbjct: 427 SSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALE 486

Query: 402 DAELVFGEMLEKDVVTWNLLVSGYVHNGLVDRALGLCRVMQSENLRFDSVTLASIMAAAA 461
           DA  +F  M ++D VTWN ++  YV +     A  L + M    +  D   LAS + A  
Sbjct: 487 DARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACT 546

Query: 462 DSRNLKLGKEGHSFCVRNNLESDVAVASSIVDTYAKCGKLECARRVFHLTIKRDLIMWNT 521
               L  GK+ H   V+  L+ D+   SS++D Y+KCG ++ AR+VF    +  ++  N 
Sbjct: 547 HVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNA 606

Query: 522 LLAAYAEQGWSGETLKLFYQMQLEGLPPNLISWNSVI----------LGLLNKGEVSK-- 581
           L+A Y++     E + LF +M   G+ P+ I++ +++          LG    G+++K  
Sbjct: 607 LIAGYSQNNLE-EAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRG 666

Query: 582 --AKDIFLEMQSLGVCPN-------------------LVTWTTLISGLAQNGLGDEAFLT 641
             ++  +L +  LG+  N                   +V WT ++SG +QNG  +EA   
Sbjct: 667 FSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKF 726

Query: 642 FQSMQEAGIKPNSLSINSLLSACTTMASLRHGRAIHGYITRRELSLSTPVLCSLVNMYAK 701
           ++ M+  G+ P+  +  ++L  C+ ++SLR GRAIH  I      L      +L++MYAK
Sbjct: 727 YKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAK 786

Query: 702 CGSINQAKRIFD-MILKKELPIYNAMISGYALHGQAVEALSLFRRLKEECIKPDEITFTC 761
           CG +  + ++FD M  +  +  +N++I+GYA +G A +AL +F  +++  I PDEITF  
Sbjct: 787 CGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLG 846

Query: 762 ILSACSHAGLVTEGLELFIDMVSNHKIVAQAEHYGCLVSILSRCHNLDEALRLILAMPFE 816
           +L+ACSHAG V++G ++F  M+  + I A+ +H  C+V +L R   L EA   I A   +
Sbjct: 847 VLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLK 906

[Close]

BLAST of CmaCh11G005830 vs. TAIR 10
Match: AT1G19720.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 436.0 bits (1120), Expect = 6.7e-122
Identity = 260/821 (31.67%), Postives = 427/821 (52.01%), Query Frame = 0


Query: 9   PTYPLASL-YST-RKLQNSPTHAAKLNESARNFQISYKSYL---TRISSLCKEGDLRAAV 68
           P++P   L Y T  K++NSP    K  +   +F    +  +    +   LC+ G L  A 
Sbjct: 7   PSFPKTFLNYQTPAKVENSPELHPKSRKKNLSFTKKKEPNIIPDEQFDYLCRNGSLLEAE 66

Query: 69  DLVSNLELQGITIGPDVYGELLQGCVYERALSLGQQIHGRILKNGEFIAKNEYIETKLVI 128
             + +L  QG  +    Y +LL+ C+   ++ LG+ +H R    G F   + ++ETKL+ 
Sbjct: 67  KALDSLFQQGSKVKRSTYLKLLESCIDSGSIHLGRILHARF---GLFTEPDVFVETKLLS 126

Query: 129 FYSKCDESEIANRLFRKLRVQNEFSWAAIMGLKCRIGFNEEALLCFCEMHENGLFLDNFV 188
            Y+KC     A ++F  +R +N F+W+A++G   R     E    F  M ++G+  D+F+
Sbjct: 127 MYAKCGCIADARKVFDSMRERNLFTWSAMIGAYSRENRWREVAKLFRLMMKDGVLPDDFL 186

Query: 189 IPIALKASGSLQWIGFGKAIHGYAVKMGLGGCIFVASSLLDMYGKCGVCGDAKKVFDKIP 248
            P  L+   +   +  GK IH   +K+G+  C+ V++S+L +Y KCG    A K F ++ 
Sbjct: 187 FPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMR 246

Query: 249 EKNIVAWNSMIVDFTHNGLYEEAIETFYDMRVEGVEPTQVTLSSFLSASANLSLINEGKQ 308
           E++++AWNS+++ +  NG +EEA+E   +M  EG+ P  VT +  +     L     GK 
Sbjct: 247 ERDVIAWNSVLLAYCQNGKHEEAVELVKEMEKEGISPGLVTWNILIGGYNQL-----GKC 306

Query: 309 GHALAVLSGLELTNILGSSLINFYSKIGLVEDAELVFGEMLEKDVVTWNLLVSGYVHNGL 368
             A+ ++  +E                         FG  +  DV TW  ++SG +HNG+
Sbjct: 307 DAAMDLMQKME------------------------TFG--ITADVFTWTAMISGLIHNGM 366

Query: 369 VDRALGLCRVMQSENLRFDSVTLASIMAAAADSRNLKLGKEGHSFCVRNNLESDVAVASS 428
             +AL + R M    +  ++VT+ S ++A +  + +  G E HS  V+     DV V +S
Sbjct: 367 RYQALDMFRKMFLAGVVPNAVTIMSAVSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNS 426

Query: 429 IVDTYAKCGKLECARRVFHLTIKRDLIMWNTLLAAYAEQGWSGETLKLFYQMQLEGLPPN 488
           +VD Y+KCGKLE AR+VF     +D+  WN+++  Y + G+ G+  +LF +MQ   L PN
Sbjct: 427 LVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPN 486

Query: 489 LISWNSVILGLLNKGEVSKAKDIFLEMQSLG-VCPNLVTWTTLISGLAQNGLGDEAFLTF 548
           +I+WN++I G +  G+  +A D+F  M+  G V  N  TW  +I+G  QNG  DEA   F
Sbjct: 487 IITWNTMISGYIKNGDEGEAMDLFQRMEKDGKVQRNTATWNLIIAGYIQNGKKDEALELF 546

Query: 549 QSMQEAGIKPNSLSINSLLSACTTMASLRHGRAIHGYITRRELSLSTPVLCSLVNMYAKC 608
           + MQ +   PNS++I SLL AC  +   +  R IHG + RR L     V  +L + YAK 
Sbjct: 547 RKMQFSRFMPNSVTILSLLPACANLLGAKMVREIHGCVLRRNLDAIHAVKNALTDTYAKS 606

Query: 609 GSINQAKRIFDMILKKELPIYNAMISGYALHGQAVEALSLFRRLKEECIKPDEITFTCIL 668
           G I  ++ IF  +  K++  +N++I GY LHG    AL+LF ++K + I P+  T + I+
Sbjct: 607 GDIEYSRTIFLGMETKDIITWNSLIGGYVLHGSYGPALALFNQMKTQGITPNRGTLSSII 666

Query: 669 SACSHAGLVTEGLELFIDMVSNHKIVAQAEHYGCLVSILSRCHNLDEALRLILAMPFEPD 728
            A    G V EG ++F  + +++ I+   EH   +V +  R + L+EAL+ I  M  + +
Sbjct: 667 LAHGLMGNVDEGKKVFYSIANDYHIIPALEHCSAMVYLYGRANRLEEALQFIQEMNIQSE 726

Query: 729 AFIFGSLLAACREHPDVELKERLFERLLKLEPDNSGNYVALSNAYSAAGMWDEASKVRDL 788
             I+ S L  CR H D+++     E L  LEP+N+     +S  Y+       + +    
Sbjct: 727 TPIWESFLTGCRIHGDIDMAIHAAENLFSLEPENTATESIVSQIYALGAKLGRSLEGNKP 786

Query: 789 MKERGLKKTPGHSLIQIGNETHVFFAGDKSHSKTKGIYKML 824
            ++  LKK  G S I++ N  H F  GD+S   T  +Y ++
Sbjct: 787 RRDNLLKKPLGQSWIEVRNLIHTFTTGDQSKLCTDVLYPLV 793

[Close]

BLAST of CmaCh11G005830 vs. TAIR 10
Match: AT3G63370.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 428.3 bits (1100), Expect = 1.4e-119
Identity = 254/778 (32.65%), Postives = 414/778 (53.21%), Query Frame = 0


Query: 79  DVYGELLQGCVYERALSLGQQIHGRILKNGEFIAKNEYIETKLVIFYSKCDESEIANRLF 138
           + +  +L+ C   RA+S G+Q+H RI K      + +++  KLV  Y KC   + A ++F
Sbjct: 81  EAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSF-ELDFLAGKLVFMYGKCGSLDDAEKVF 140

Query: 139 RKLRVQNEFSWAAIMGLKCRIGFNEEALLCFCEMHENGLFLDNFVIPIALKASGSLQWIG 198
            ++  +  F+W  ++G     G    AL  +  M   G+ L     P  LKA   L+ I 
Sbjct: 141 DEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIR 200

Query: 199 FGKAIHGYAVKMGLGGCIFVASSLLDMYGKCGVCGDAKKVFDKIPEK-NIVAWNSMIVDF 258
            G  +H   VK+G     F+ ++L+ MY K      A+++FD   EK + V WNS++  +
Sbjct: 201 SGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSY 260

Query: 259 THNGLYEEAIETFYDMRVEGVEPTQVTLSSFLSASANLSLINEGKQGHALAVLSGLELTN 318
           + +G   E +E F +M + G  P   T+ S L+A    S    GK+ HA  + S    + 
Sbjct: 261 STSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSE 320

Query: 319 I-LGSSLINFYSKIGLVEDAELVFGEMLEKDVVTWNLLVSGYVHNGLVDRALGLCRVMQS 378
           + + ++LI  Y++ G +  AE +  +M   DVVTWN L+ GYV N +   AL     M +
Sbjct: 321 LYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIA 380

Query: 379 ENLRFDSVTLASIMAAAADSRNLKLGKEGHSFCVRNNLESDVAVASSIVDTYAKCGKLEC 438
              + D V++ SI+AA+    NL  G E H++ +++  +S++ V ++++D Y+KC     
Sbjct: 381 AGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCY 440

Query: 439 ARRVFHLTIKRDLIMWNTLLAAYAEQGWSGETLKLF-----YQMQLEGLPPNLISWNSVI 498
             R F     +DLI W T++A YA+     E L+LF      +M+++ +    I   S +
Sbjct: 441 MGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSV 500

Query: 499 L----------------GLLNKGEVSKAKDIFLEMQSLGVC---------PNLVTWTTLI 558
           L                GLL+    ++  D++ + +++G            ++V+WT++I
Sbjct: 501 LKSMLIVKEIHCHILRKGLLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMI 560

Query: 559 SGLAQNGLGDEAFLTFQSMQEAGIKPNSLSINSLLSACTTMASLRHGRAIHGYITRRELS 618
           S  A NG   EA   F+ M E G+  +S+++  +LSA  ++++L  GR IH Y+ R+   
Sbjct: 561 SSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFC 620

Query: 619 LSTPVLCSLVNMYAKCGSINQAKRIFDMILKKELPIYNAMISGYALHGQAVEALSLFRRL 678
           L   +  ++V+MYA CG +  AK +FD I +K L  Y +MI+ Y +HG    A+ LF ++
Sbjct: 621 LEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKM 680

Query: 679 KEECIKPDEITFTCILSACSHAGLVTEGLELFIDMVSNHKIVAQAEHYGCLVSILSRCHN 738
           + E + PD I+F  +L ACSHAGL+ EG      M   +++    EHY CLV +L R + 
Sbjct: 681 RHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANC 740

Query: 739 LDEALRLILAMPFEPDAFIFGSLLAACREHPDVELKERLFERLLKLEPDNSGNYVALSNA 798
           + EA   +  M  EP A ++ +LLAACR H + E+ E   +RLL+LEP N GN V +SN 
Sbjct: 741 VVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNV 800

Query: 799 YSAAGMWDEASKVRDLMKERGLKKTPGHSLIQIGNETHVFFAGDKSHSKTKGIYKMLA 825
           ++  G W++  KVR  MK  G++K PG S I++  + H F A DKSH ++K IY+ L+
Sbjct: 801 FAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLS 857

[Close]

BLAST of CmaCh11G005830 vs. TAIR 10
Match: AT1G18485.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 424.5 bits (1090), Expect = 2.0e-118
Identity = 266/867 (30.68%), Postives = 440/867 (50.75%), Query Frame = 0


Query: 17  YSTRKLQNSPTHAAKLNESARNFQISYKSYLTRISSLCKEGDL----RAAVDLVSNLE-- 76
           Y   + ++S   A   + S  +   +   +L RIS+ C+ GDL    R   + V + E  
Sbjct: 17  YRRSRKESSFPRAVYNSNSISSNSTNANHFLRRISNFCETGDLDKSFRTVQEFVGDDESS 76

Query: 77  LQGITIGPDVYGELLQGCVYERALSLGQQIHGRILKNGEFIAKNEYIETKLVIFYSKCDE 136
                +  +  G LLQ     + + +G++IH +++     +  ++ + T+++  Y+ C  
Sbjct: 77  SDAFLLVREALGLLLQASGKRKDIEMGRKIH-QLVSGSTRLRNDDVLCTRIITMYAMCGS 136

Query: 137 SEIANRLFRKLRVQNEFSWAAIMGLKCRIGFNEEALLCFCEM-HENGLFLDNFVIPIALK 196
            + +  +F  LR +N F W A++    R    +E L  F EM     L  D+F  P  +K
Sbjct: 137 PDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIK 196

Query: 197 ASGSLQWIGFGKAIHGYAVKMGLGGCIFVASSLLDMYGKCGVCGDAKKVFDKIPEKNIVA 256
           A   +  +G G A+HG  VK GL   +FV ++L+  YG  G   DA ++FD +PE+N+V+
Sbjct: 197 ACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVS 256

Query: 257 WNSMIVDFTHNGLYEEAIETFYDMRVEGVE----PTQVTLSSFLSASANLSLINEGKQGH 316
           WNSMI  F+ NG  EE+     +M  E  +    P   TL + L   A    I  GK  H
Sbjct: 257 WNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVH 316

Query: 317 ALAVLSGLELTNILGSSLINFYSKIGLVEDAELVFGEMLEKDVVTWNLLVSGYVHNGLVD 376
             AV   L+   +L ++L++ YSK G + +A+++F     K+VV+WN +V G+   G   
Sbjct: 317 GWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTH 376

Query: 377 RALGLCRVMQS--ENLRFDSVTLASIMAAAADSRNLKLGKEGHSFCVRNNLESDVAVASS 436
               + R M +  E+++ D VT+ + +        L   KE H + ++     +  VA++
Sbjct: 377 GTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANA 436

Query: 437 IVDTYAKCGKLECARRVFHLTIKRDLIMWNTLLAAYAEQGWSGETLKLFYQMQLEGLPP- 496
            V +YAKCG L  A+RVFH    + +  WN L+  +A+      +L    QM++ GL P 
Sbjct: 437 FVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPD 496

Query: 497 ----------------------------------NLISWNSVILGLLNKGEVSKAKDIFL 556
                                             +L  + SV+   ++ GE+   + +F 
Sbjct: 497 SFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFD 556

Query: 557 EMQSLGVCPNLVTWTTLISGLAQNGLGDEAFLTFQSMQEAGIKPNSLSINSLLSACTTMA 616
            M+      +LV+W T+I+G  QNG  D A   F+ M   GI+   +S+  +  AC+ + 
Sbjct: 557 AMED----KSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLP 616

Query: 617 SLRHGRAIHGYITRRELSLSTPVLCSLVNMYAKCGSINQAKRIFDMILKKELPIYNAMIS 676
           SLR GR  H Y  +  L     + CSL++MYAK GSI Q+ ++F+ + +K    +NAMI 
Sbjct: 617 SLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIM 676

Query: 677 GYALHGQAVEALSLFRRLKEECIKPDEITFTCILSACSHAGLVTEGLELFIDMVSNHKIV 736
           GY +HG A EA+ LF  ++     PD++TF  +L+AC+H+GL+ EGL     M S+  + 
Sbjct: 677 GYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLK 736

Query: 737 AQAEHYGCLVSILSRCHNLDEALRLIL-AMPFEPDAFIFGSLLAACREHPDVELKERLFE 796
              +HY C++ +L R   LD+ALR++   M  E D  I+ SLL++CR H ++E+ E++  
Sbjct: 737 PNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAA 796

Query: 797 RLLKLEPDNSGNYVALSNAYSAAGMWDEASKVRDLMKERGLKKTPGHSLIQIGNETHVFF 835
           +L +LEP+   NYV LSN Y+  G W++  KVR  M E  L+K  G S I++  +   F 
Sbjct: 797 KLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFV 856

The following BLAST results are available for this feature:

BLAST of CmaCh11G005830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FM64	3.3e-267	54.86	Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidop...	[more]
Q9SS83	8.5e-122	31.77	Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidop...	[more]
Q9FXH1	9.4e-121	31.67	Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana OX...	[more]
Q9M1V3	2.0e-118	32.65	Pentatricopeptide repeat-containing protein At3g63370, chloroplastic OS=Arabidop...	[more]
Q0WN60	2.8e-117	30.68	Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana OX...	[more]

BLAST of CmaCh11G005830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55740.1	2.4e-268	54.86	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G09040.1	6.1e-123	31.77	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G19720.1	6.7e-122	31.67	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT3G63370.1	1.4e-119	32.65	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G18485.1	2.0e-118	30.68	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 322..349 e-value: 5.1E-4 score: 18.0 coord: 450..483 e-value: 1.1E-5 score: 23.3 coord: 765..789 e-value: 0.003 score: 15.6 coord: 656..684 e-value: 0.0011 score: 17.0 coord: 349..382 e-value: 7.5E-5 score: 20.7 coord: 622..655 e-value: 3.0E-7 score: 28.2 coord: 520..554 e-value: 5.1E-9 score: 33.7 coord: 485..518 e-value: 7.6E-7 score: 26.9 coord: 248..281 e-value: 3.3E-4 score: 18.6
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 45..70 e-value: 0.4 score: 11.0 coord: 148..177 e-value: 0.061 score: 13.6 coord: 349..378 e-value: 1.0E-5 score: 25.5 coord: 321..347 e-value: 5.4E-4 score: 20.0 coord: 760..788 e-value: 0.0013 score: 18.8 coord: 450..480 e-value: 9.1E-4 score: 19.3 coord: 594..618 e-value: 0.51 score: 10.7
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 622..666 e-value: 2.5E-9 score: 37.2 coord: 482..530 e-value: 5.2E-12 score: 45.8 coord: 245..291 e-value: 7.3E-9 score: 35.7
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 347..381 score: 10.468099
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 483..517 score: 11.147699
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 246..280 score: 11.32308
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 518..552 score: 12.342482
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 654..684 score: 8.780059
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 448..482 score: 11.005202
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 756..790 score: 9.865228
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 619..653 score: 10.654441
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 145..179 score: 8.527949
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 44..198 e-value: 2.7E-15 score: 58.5
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 689..797 e-value: 3.5E-13 score: 51.3 coord: 299..407 e-value: 2.2E-18 score: 68.2 coord: 206..298 e-value: 4.3E-16 score: 60.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 465..568 e-value: 2.0E-28 score: 101.8 coord: 569..688 e-value: 9.0E-24 score: 86.4
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 434..779
None	No IPR available	PANTHER	PTHR24015	OS07G0578800 PROTEIN-RELATED	coord: 529..819 coord: 346..394 coord: 36..347
None	No IPR available	PANTHER	PTHR24015	OS07G0578800 PROTEIN-RELATED	coord: 360..539
None	No IPR available	PANTHER	PTHR24015:SF1603	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 346..394
None	No IPR available	PANTHER	PTHR24015:SF1603	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 529..819 coord: 360..539 coord: 36..347

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G005830.1	CmaCh11G005830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0005515	protein binding