CmaCh11G005520 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G005520
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionZinc finger, RING-CH-type
LocationCma_Chr11: 2665204 .. 2667809 (+)
RNA-Seq ExpressionCmaCh11G005520
SyntenyCmaCh11G005520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCTCTCTAATTTCGTTTTTTTCCAATTACTTTTAAGTTTTCTTTTCGTGTTAATTTGGATGAACGATGGATTGACTTCCATATATTTAATTCTAATTCTGGGTGATGGTTTTTGATCTTTGTGAATTTGTGATCAAGTTTGTTCTAGGGCTGAAAGCTTCGGTCGTTCTCTTTCGGGTAAGGAGATAACCAATGAAAGGGGAAGTACAGTTGGAATCGTCTATTGCCCAAAAACCTACTGACTCTGATCCTCTGCTTGAGAATCAGTCCGATTCATCCCATGGTGGAACCTCCGATGAAATCAGGGACGATGAGGATGCTGAAGCTGGTTCCATTCCCTGTTGTCGTATTTGCCTAGAGAGCGACGCTGAACCAGGTCAATTTCATCGTTACTTTCCTCGTTGGATGTTTATTTTCTTCTTAATTCATGCTCGGTTAAACAATTTAGATGTTGGCGCAATTCTGTTGAATTTTAGCTTCATCGCATCTTGGGGGGTAATACCACTGATTATTACAGTCATATACGAGTTTTCATAGCTGGGGTAATATCTTCTTCCACTGGCTCAAATCCAATTTTCCATTTTACAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCATTAAGGCAAATTTCTTTATTTTAGTTCTTCTACGGTGTTCCTGCTTTCGACTATCAAGGATTTGCTTGTTTCCTATTCTATTTTCTTATGATTTTAATCAATCTGAAAGGATTCTCGTAATTCTGCAGGAAGGGTTTGCTTTCTCGCATTGCACAACATGCAAATCCCAATTTCATCTGAAAGTTTCCTTATTTGAGGACAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGGGATGTTCTCCTTGTATTTCTAGCTGTTCAAACTGTGAGTTCACTTAAACTTCCTACGATTCTAAAGTCAATTCGAATTCTCTTTTTCTGAAATGCATGAGAAAATTAAATGTTTAAACATAAACTTTTATGGAAAATCTTGTCTGCACTTTGATAATGGAGGGTTTATCCCTTTTGCAGTTAATAGCTGCAATGGGTGGTTATGCGTATATTATGGACAAAGATGGGGCATTCAGAAATTCTTTCAGTGATGGATGGGATCGTATTCTCTCCAAACATCCTATTCCATTTTATTACTGTATTGGTAAACTACTTTTCATCTAAACTGGTCTACTTTTTCTTTAAGAATTGGATCTTAGACGTGCCGGATCATCCCAAATACAAATTCTTTTATTGATAAATTCAGGCTTCGTTGTGCATTGTATTGTTTATTCATACTCAAGATGAAGTAGCAGGGACGTAAAATCTCTCATTTTATTAGTGTTGAAAGCTTATTACTAGTTCACGATGGAAAATGGATATCTTCATCTACATTCCTGTCAAAATAATTATTTTACTGCGGAGAGGAGGGAGGAACGAAGCATTCTTTATAAGGGTGTGAAGACTTTTCCCTAGCAAATGCGTTTTAAAACCTTGAGGGGAACCCGGAAGGGAAAGCCCAAAGAGTACAATATTTGCTAGAGGTGGGCTTGGGCTTGGGCTGTTACACATTGACGCATTGTCAATAACACTCCCCTCTCCCCTGAAAAGTATGTGAAATCTTTCATTTAAGTTGACTGCTTGTAAAATTAAATTCAGCTTCCATTTCGAATTTCATGCTGAGGTCTTGTCTTTGGATACAGCTCCTTTGTTCACCAATTTCTTTCTGAGCATTTTTCTTTTTCTAAATTTCATGGTTCGAAGAGTTATCGGATTAATTATGCATTGTCGACAACTTGTTTCATGGAGTTTTGATTTATTAATGTATTGTTGTATGCATGTTTGCCTTATGCCAGGGGTTCTGGCCTTCTTTGTTCTGCTTGGATTTTTCGGGCTCATACTACATTGTTCCTCCCTGAATAGTAACGATCCACGAGTTGCTGGGTGTCACAACTGTTGCTATGGCTGGGGTATCTTGGATTGTTTCCCTGCATCTATGGAGGCCTGCTTTGCACTTGTTATTGTTTTCGTCGTTATCTTTGTAATCCTTGGCATAGCTTATGGTTTCCTCGCTGCTACTATGGCTATCCAAAGGATCTGGCAAAGGCATTACCACATTCTCACCAAAAGGGAGCTGACTAAAGTAAAGTTCTAAACCCGTTTGTGTTTGTTGTTAGTGGATACCATACCTGGTACTGGTTTTTATACTTCACTTTTCTGTAGGAATATGTGGTGGAGGATCTTCACGGTTGTTATACCCCTCCAAAATTGGATCCAGAACATGAACAGCACTTGAAAATGCTACAGCTCCTGTAATGAATGGCAGATGAGGTGTTAAATTTTTATTTTGTTTGCTATGATCTTTTGTTTGAGACGATACAATGTGCATTTGCTTAACTGCGTTGTTATAAATGAGCAATGTGGAAAATAGATTTTAACTAATTTGTCACTCACCCCTTCTCGCATTTTGTGCTCCAGTTTCAGTTTTTAGGCCATTGTCATCCTCAACATTTTGATTGTTTCTCAAGTGTTCATGAAGTGGGGCATTATTCATATA

mRNA sequence

AGCTCTCTAATTTCGTTTTTTTCCAATTACTTTTAAGTTTTCTTTTCGTGTTAATTTGGATGAACGATGGATTGACTTCCATATATTTAATTCTAATTCTGGGTGATGGTTTTTGATCTTTGTGAATTTGTGATCAAGTTTGTTCTAGGGCTGAAAGCTTCGGTCGTTCTCTTTCGGGTAAGGAGATAACCAATGAAAGGGGAAGTACAGTTGGAATCGTCTATTGCCCAAAAACCTACTGACTCTGATCCTCTGCTTGAGAATCAGTCCGATTCATCCCATGGTGGAACCTCCGATGAAATCAGGGACGATGAGGATGCTGAAGCTGGTTCCATTCCCTGTTGTCGTATTTGCCTAGAGAGCGACGCTGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCATTAAGGAAGGGTTTGCTTTCTCGCATTGCACAACATGCAAATCCCAATTTCATCTGAAAGTTTCCTTATTTGAGGACAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGGGATGTTCTCCTTGTATTTCTAGCTGTTCAAACTTTAATAGCTGCAATGGGTGGTTATGCGTATATTATGGACAAAGATGGGGCATTCAGAAATTCTTTCAGTGATGGATGGGATCGTATTCTCTCCAAACATCCTATTCCATTTTATTACTGTATTGGGGTTCTGGCCTTCTTTGTTCTGCTTGGATTTTTCGGGCTCATACTACATTGTTCCTCCCTGAATAGTAACGATCCACGAGTTGCTGGGTGTCACAACTGTTGCTATGGCTGGGGTATCTTGGATTGTTTCCCTGCATCTATGGAGGCCTGCTTTGCACTTGTTATTGTTTTCGTCGTTATCTTTGTAATCCTTGGCATAGCTTATGGTTTCCTCGCTGCTACTATGGCTATCCAAAGGATCTGGCAAAGGCATTACCACATTCTCACCAAAAGGGAGCTGACTAAAGAATATGTGGTGGAGGATCTTCACGGTTGTTATACCCCTCCAAAATTGGATCCAGAACATGAACAGCACTTGAAAATGCTACAGCTCCTGTAATGAATGGCAGATGAGGTGTTAAATTTTTATTTTGTTTGCTATGATCTTTTGTTTGAGACGATACAATGTGCATTTGCTTAACTGCGTTGTTATAAATGAGCAATGTGGAAAATAGATTTTAACTAATTTGTCACTCACCCCTTCTCGCATTTTGTGCTCCAGTTTCAGTTTTTAGGCCATTGTCATCCTCAACATTTTGATTGTTTCTCAAGTGTTCATGAAGTGGGGCATTATTCATATA

Coding sequence (CDS)

ATGAAAGGGGAAGTACAGTTGGAATCGTCTATTGCCCAAAAACCTACTGACTCTGATCCTCTGCTTGAGAATCAGTCCGATTCATCCCATGGTGGAACCTCCGATGAAATCAGGGACGATGAGGATGCTGAAGCTGGTTCCATTCCCTGTTGTCGTATTTGCCTAGAGAGCGACGCTGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCATTAAGGAAGGGTTTGCTTTCTCGCATTGCACAACATGCAAATCCCAATTTCATCTGAAAGTTTCCTTATTTGAGGACAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGGGATGTTCTCCTTGTATTTCTAGCTGTTCAAACTTTAATAGCTGCAATGGGTGGTTATGCGTATATTATGGACAAAGATGGGGCATTCAGAAATTCTTTCAGTGATGGATGGGATCGTATTCTCTCCAAACATCCTATTCCATTTTATTACTGTATTGGGGTTCTGGCCTTCTTTGTTCTGCTTGGATTTTTCGGGCTCATACTACATTGTTCCTCCCTGAATAGTAACGATCCACGAGTTGCTGGGTGTCACAACTGTTGCTATGGCTGGGGTATCTTGGATTGTTTCCCTGCATCTATGGAGGCCTGCTTTGCACTTGTTATTGTTTTCGTCGTTATCTTTGTAATCCTTGGCATAGCTTATGGTTTCCTCGCTGCTACTATGGCTATCCAAAGGATCTGGCAAAGGCATTACCACATTCTCACCAAAAGGGAGCTGACTAAAGAATATGTGGTGGAGGATCTTCACGGTTGTTATACCCCTCCAAAATTGGATCCAGAACATGAACAGCACTTGAAAATGCTACAGCTCCTGTAA

Protein sequence

MKGEVQLESSIAQKPTDSDPLLENQSDSSHGGTSDEIRDDEDAEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSIKEGFAFSHCTTCKSQFHLKVSLFEDNSWRKVKFRLFVARDVLLVFLAVQTLIAAMGGYAYIMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLHGCYTPPKLDPEHEQHLKMLQLL
Homology
[Close]
BLAST of CmaCh11G005520 vs. ExPASy Swiss-Prot
Match: A0JN69 (E3 ubiquitin-protein ligase MARCHF3 OS=Bos taurus OX=9913 GN=MARCHF3 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.2e-06
Identity = 25/57 (43.86%), Postives = 34/57 (59.65%), Query Frame = 0 

Query: 49  PCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSIKEGFAFSHCTTCKSQF 106
           P CRIC E  +  +++L+SPC C GT   +HRSCL+HW S       S+C  C  +F
Sbjct: 69  PMCRICHEGSS--QEDLLSPCECTGTLGTIHRSCLEHWLSSSN---TSYCELCHFRF 120

[Close]
BLAST of CmaCh11G005520 vs. ExPASy Swiss-Prot
Match: Q86UD3 (E3 ubiquitin-protein ligase MARCHF3 OS=Homo sapiens OX=9606 GN=MARCHF3 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.2e-06
Identity = 25/57 (43.86%), Postives = 34/57 (59.65%), Query Frame = 0 

Query: 49  PCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSIKEGFAFSHCTTCKSQF 106
           P CRIC E  +  +++L+SPC C GT   +HRSCL+HW S       S+C  C  +F
Sbjct: 69  PMCRICHEGSS--QEDLLSPCECTGTLGTIHRSCLEHWLSSSN---TSYCELCHFRF 120

[Close]
BLAST of CmaCh11G005520 vs. ExPASy Swiss-Prot
Match: Q8BRX9 (E3 ubiquitin-protein ligase MARCHF3 OS=Mus musculus OX=10090 GN=Marchf3 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.2e-06
Identity = 25/57 (43.86%), Postives = 34/57 (59.65%), Query Frame = 0 

Query: 49  PCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSIKEGFAFSHCTTCKSQF 106
           P CRIC E  +  +++L+SPC C GT   +HRSCL+HW S       S+C  C  +F
Sbjct: 69  PMCRICHEGSS--QEDLLSPCECTGTLGTIHRSCLEHWLSSSN---TSYCELCHFRF 120

[Close]
BLAST of CmaCh11G005520 vs. ExPASy Swiss-Prot
Match: Q5XIE5 (E3 ubiquitin-protein ligase MARCHF3 OS=Rattus norvegicus OX=10116 GN=Marchf3 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.2e-06
Identity = 25/57 (43.86%), Postives = 34/57 (59.65%), Query Frame = 0 

Query: 49  PCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSIKEGFAFSHCTTCKSQF 106
           P CRIC E  +  +++L+SPC C GT   +HRSCL+HW S       S+C  C  +F
Sbjct: 69  PMCRICHEGSS--QEDLLSPCECTGTLGTIHRSCLEHWLSSSN---TSYCELCHFRF 120

[Close]
BLAST of CmaCh11G005520 vs. ExPASy Swiss-Prot
Match: Q0IH10 (E3 ubiquitin-protein ligase MARCHF3 OS=Xenopus laevis OX=8355 GN=marchf3 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.2e-06
Identity = 25/60 (41.67%), Postives = 35/60 (58.33%), Query Frame = 0 

Query: 49  PCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSIKEGFAFSHCTTCKSQFHLK 108
           P CRIC E     +++L+SPC C GT   +HRSCL+HW S       S+C  C  +F ++
Sbjct: 68  PMCRICHEGST--QEDLLSPCECTGTLGTIHRSCLEHWLSSSN---TSYCELCHFRFSVE 122

[Close]
BLAST of CmaCh11G005520 vs. TAIR 10
Match: AT1G11020.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 490.3 bits (1261), Expect = 1.1e-138
Identity = 246/320 (76.88%), Postives = 273/320 (85.31%), Query Frame = 0 

Query: 1   MKGEVQLESSIAQKPTDSDPLLENQSDSSH---------GGTSDEIRDDEDAE--AGSIP 60
           M+GEVQL+   +QK +DS PLL + ++SS           G SDEI+ +ED E  A S P
Sbjct: 2   MQGEVQLQPPDSQKLSDSAPLLGDHTNSSSASPSAASVVAGNSDEIKAEEDLENDASSAP 61

Query: 61  CCRICLESDAE-PEDELISPCMCKGTQQFVHRSCLDHWRSIKEGFAFSHCTTCKSQFHLK 120
           CCRICLE D+E   DELISPCMCKGTQQFVHRSCLDHWRS+KEGFAFSHCTTCK+QFHL+
Sbjct: 62  CCRICLEDDSELLGDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLR 121

Query: 121 VSLFED-NSW-RKVKFRLFVARDVLLVFLAVQTLIAAMGGYAYIMDKDGAFRNSFSDGWD 180
           V  FED NSW RK KFRLFVARDVLLVFLAVQT+IA M G+AY+MDKDG FRNSF+D WD
Sbjct: 122 VEPFEDNNSWRRKAKFRLFVARDVLLVFLAVQTVIAVMAGFAYMMDKDGEFRNSFNDDWD 181

Query: 181 RILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPA 240
           RILSKHPIPFYYCIGV++FFVL GF G+ILHCS+LN NDPR+AGC NCCYGWG+LDCFPA
Sbjct: 182 RILSKHPIPFYYCIGVISFFVLTGFLGIILHCSALNGNDPRMAGCQNCCYGWGVLDCFPA 241

Query: 241 SMEACFALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLHGC 300
           SMEACFALV+VFVVIF ILG+AYGFLAATMAIQRIWQRHYHILTKRELTKEY+VEDLHG 
Sbjct: 242 SMEACFALVVVFVVIFAILGLAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLHGS 301

Query: 301 YTPPKLDPEHEQHLKMLQLL 307
           YTPPKLD EHE  LKML+LL
Sbjct: 302 YTPPKLDAEHEGRLKMLKLL 321

[Close]
BLAST of CmaCh11G005520 vs. TAIR 10
Match: AT2G22120.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 212.2 bits (539), Expect = 5.7e-55
Identity = 134/332 (40.36%), Postives = 170/332 (51.20%), Query Frame = 0 

Query: 20  PLLE-NQSDSSHGGTSDEIRDDEDAEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFV 79
           P++E ++ D   GG  ++I+            CRICLE+D     + I+PC CKGT ++V
Sbjct: 15  PMVEPSEIDLEAGGPGEQIQ------------CRICLETDGR---DFIAPCKCKGTSKYV 74

Query: 80  HRSCLDHWRSIKEGFAFSHCTTCKSQFHLKVSLFEDNSWRKVKFRLFVARDVLLVFLAVQ 139
           HR CLDHWR+IKEGFAF+HCTTCK+ ++L+V    D  WR +KFR FV RD+L +FLAVQ
Sbjct: 75  HRDCLDHWRAIKEGFAFAHCTTCKAPYYLRVHSAGDRKWRTLKFRFFVTRDILSIFLAVQ 134

Query: 140 TLIAAMGGYAYIMDKDGAFRNSFSDGWDRIL--SKHPIPFYYCIGVLAFFVLLGFFGLIL 199
            +IAA+    Y +D       S+   W R +      + FYY  G L FF LLG  G ++
Sbjct: 135 LVIAALAYMVYFID-------SYQQSWLRHIWGFDSEVTFYYMCGALLFFALLGLSGCVI 194

Query: 200 HCSSLNSNDPRVAGCHN---CCYGWGILD--------CFPASMEAC-------------- 259
            C      +     C     CC   GI          C  A   AC              
Sbjct: 195 TCYDRRVRNDLAQPCRELCLCCCQPGICTDCHLPGTICMWADCTACTEGCASAVSECGGC 254

Query: 260 ------------FALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYV 307
                       F   +V + +F ++GI Y  L ATM  QRIWQRHYHIL KR LTKEYV
Sbjct: 255 LGGAGEAGLPLLFITALVILGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYV 314

[Close]
BLAST of CmaCh11G005520 vs. TAIR 10
Match: AT2G22120.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 212.2 bits (539), Expect = 5.7e-55
Identity = 134/332 (40.36%), Postives = 170/332 (51.20%), Query Frame = 0 

Query: 20  PLLE-NQSDSSHGGTSDEIRDDEDAEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFV 79
           P++E ++ D   GG  ++I+            CRICLE+D     + I+PC CKGT ++V
Sbjct: 15  PMVEPSEIDLEAGGPGEQIQ------------CRICLETDGR---DFIAPCKCKGTSKYV 74

Query: 80  HRSCLDHWRSIKEGFAFSHCTTCKSQFHLKVSLFEDNSWRKVKFRLFVARDVLLVFLAVQ 139
           HR CLDHWR+IKEGFAF+HCTTCK+ ++L+V    D  WR +KFR FV RD+L +FLAVQ
Sbjct: 75  HRDCLDHWRAIKEGFAFAHCTTCKAPYYLRVHSAGDRKWRTLKFRFFVTRDILSIFLAVQ 134

Query: 140 TLIAAMGGYAYIMDKDGAFRNSFSDGWDRIL--SKHPIPFYYCIGVLAFFVLLGFFGLIL 199
            +IAA+    Y +D       S+   W R +      + FYY  G L FF LLG  G ++
Sbjct: 135 LVIAALAYMVYFID-------SYQQSWLRHIWGFDSEVTFYYMCGALLFFALLGLSGCVI 194

Query: 200 HCSSLNSNDPRVAGCHN---CCYGWGILD--------CFPASMEAC-------------- 259
            C      +     C     CC   GI          C  A   AC              
Sbjct: 195 TCYDRRVRNDLAQPCRELCLCCCQPGICTDCHLPGTICMWADCTACTEGCASAVSECGGC 254

Query: 260 ------------FALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYV 307
                       F   +V + +F ++GI Y  L ATM  QRIWQRHYHIL KR LTKEYV
Sbjct: 255 LGGAGEAGLPLLFITALVILGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYV 314

[Close]
BLAST of CmaCh11G005520 vs. TAIR 10
Match: AT1G50440.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 151.0 bits (380), Expect = 1.6e-36
Identity = 99/279 (35.48%), Postives = 136/279 (48.75%), Query Frame = 0 

Query: 32  GTSDEIRDDEDAE-----AGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHW 91
           G   EI + +D E     +G  P CRICL+   E   +LI+PC CKGTQ+ VHRSCLD+W
Sbjct: 40  GQVSEIAETDDDETTLLVSGDQPQCRICLDVGGE---DLIAPCNCKGTQKHVHRSCLDNW 99

Query: 92  RSIKEGFAFSHCTTCKSQFHLKVSLFEDNSWRKVKFRLFVARDVLLVFLAVQTLIAAMGG 151
           RS KEGFAFSHCT C++ F L+ ++  D  W +++F+L VARD   +F++VQ ++A +G 
Sbjct: 100 RSTKEGFAFSHCTECRAFFKLRANVPADRWWLRLRFQLLVARDHAFIFISVQMIVAFLGL 159

Query: 152 YAYIMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDP 211
             Y    +   R  F         +HP  FY                             
Sbjct: 160 LVYKFYGE-ELREMFG------YEEHPYGFY----------------------------- 219

Query: 212 RVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHY 271
                                         + V+  V++G+ YGF  A +  Q+I +RHY
Sbjct: 220 -----------------------------TLAVLAIVLVGLLYGFFIAIICGQKINERHY 249

Query: 272 HILTKRELTKEYVVEDLHGCYTPPKLDPEHEQHLKMLQL 306
           H+L K+ELTKEY+VED   C   P+LD  H   LKML L
Sbjct: 280 HVLAKQELTKEYIVED-RDCKNVPELDQSHVMELKMLGL 249

[Close]
BLAST of CmaCh11G005520 vs. TAIR 10
Match: AT1G50440.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 151.0 bits (380), Expect = 1.6e-36
Identity = 99/279 (35.48%), Postives = 136/279 (48.75%), Query Frame = 0 

Query: 32  GTSDEIRDDEDAE-----AGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHW 91
           G   EI + +D E     +G  P CRICL+   E   +LI+PC CKGTQ+ VHRSCLD+W
Sbjct: 40  GQVSEIAETDDDETTLLVSGDQPQCRICLDVGGE---DLIAPCNCKGTQKHVHRSCLDNW 99

Query: 92  RSIKEGFAFSHCTTCKSQFHLKVSLFEDNSWRKVKFRLFVARDVLLVFLAVQTLIAAMGG 151
           RS KEGFAFSHCT C++ F L+ ++  D  W +++F+L VARD   +F++VQ ++A +G 
Sbjct: 100 RSTKEGFAFSHCTECRAFFKLRANVPADRWWLRLRFQLLVARDHAFIFISVQMIVAFLGL 159

Query: 152 YAYIMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDP 211
             Y    +   R  F         +HP  FY                             
Sbjct: 160 LVYKFYGE-ELREMFG------YEEHPYGFY----------------------------- 219

Query: 212 RVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHY 271
                                         + V+  V++G+ YGF  A +  Q+I +RHY
Sbjct: 220 -----------------------------TLAVLAIVLVGLLYGFFIAIICGQKINERHY 249

Query: 272 HILTKRELTKEYVVEDLHGCYTPPKLDPEHEQHLKMLQL 306
           H+L K+ELTKEY+VED   C   P+LD  H   LKML L
Sbjct: 280 HVLAKQELTKEYIVED-RDCKNVPELDQSHVMELKMLGL 249

The following BLAST results are available for this feature:
BLAST of CmaCh11G005520 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A0JN692.2e-0643.86E3 ubiquitin-protein ligase MARCHF3 OS=Bos taurus OX=9913 GN=MARCHF3 PE=2 SV=1[more]
Q86UD32.2e-0643.86E3 ubiquitin-protein ligase MARCHF3 OS=Homo sapiens OX=9606 GN=MARCHF3 PE=1 SV=1[more]
Q8BRX92.2e-0643.86E3 ubiquitin-protein ligase MARCHF3 OS=Mus musculus OX=10090 GN=Marchf3 PE=2 SV=... [more]
Q5XIE52.2e-0643.86E3 ubiquitin-protein ligase MARCHF3 OS=Rattus norvegicus OX=10116 GN=Marchf3 PE=... [more]
Q0IH102.2e-0641.67E3 ubiquitin-protein ligase MARCHF3 OS=Xenopus laevis OX=8355 GN=marchf3 PE=2 SV... [more]
BLAST of CmaCh11G005520 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G11020.11.1e-13876.88RING/FYVE/PHD zinc finger superfamily protein [more]
AT2G22120.15.7e-5540.36RING/FYVE/PHD zinc finger superfamily protein [more]
AT2G22120.25.7e-5540.36RING/FYVE/PHD zinc finger superfamily protein [more]
AT1G50440.11.6e-3635.48RING/FYVE/PHD zinc finger superfamily protein [more]
AT1G50440.21.6e-3635.48RING/FYVE/PHD zinc finger superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 50..102
e-value: 3.9E-18
score: 76.3
IPR011016Zinc finger, RING-CH-typePFAMPF12906RINGvcoord: 51..101
e-value: 2.7E-12
score: 46.6
IPR011016Zinc finger, RING-CH-typePROSITEPS51292ZF_RING_CHcoord: 43..108
score: 21.660635
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 35..115
e-value: 1.1E-18
score: 68.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
NoneNo IPR availablePANTHERPTHR46347RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEINcoord: 1..306
NoneNo IPR availablePANTHERPTHR46347:SF4RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEINcoord: 1..306
NoneNo IPR availableCDDcd16495RING_CH-C4HC3_MARCHcoord: 51..102
e-value: 3.21733E-21
score: 83.1456
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 49..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G005520.1CmaCh11G005520.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008270 zinc ion binding