CmaCh11G005400 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G005400
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionTetratricopeptide repeat (TPR)-like superfamily protein
LocationCma_Chr11: 2603215 .. 2604513 (-)
RNA-Seq ExpressionCmaCh11G005400
SyntenyCmaCh11G005400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTTTGTTTGGAGCCACATTACCGACTAACTAGTTGCTAAAAGAGAAAACCAAACAGCCAAACTTTGTGCGTACACGGTTTTCTTGGTCCTCACACACCCGACGTCTCAGATTTCATATTCAATTGCCACTAATTCTCCTATAAAAATACCAGGCGCTACCGCCATTGTGAAGGAACTGATACATACCAGGCAAGAACAACTTCATATGCAATAACAAGCTCAAGAATACCTTCGAAACAATGATTCTGAGAAGCGCTTCGACTCCCCTCTTCAATTCATGGTTACACCATTCAAGAGATTCATACCTGGAGCCGGAGATCGTGAACCAAATCCCTAGGGCGCGTTCCATTGTGCTCTGTTGCTCACCCAGTTGCACATCTCCGATAATCGATGACTCACCCAGGAAGATTACTCGGGCGTTGTCCGAGACGGATCTTCGAGACATGTCCATGAATAAGATGAAACCCTTTAGCAGAACTCTGAGTGGGTTTTCTGAGGTTGACGAAGAGAGGGATGTAATCGGGTTTAGCCGCTCCAAAACGGCGTCGTTGAGGCGTGAATCGATTTCTGAAACTGGGGATAGGGATGGTGGGTTTGTTAATGTTCTGGTTGGTGGTGGAGTTGGTGGTAGTGGTGGAAGGATCAGTGGCGGCGGAGGATCCGACGGTGGCGACGATGGGAGTTTCGGGATTGGAGATTCGAATCATGGAAATGACAATACGGATCTGCACTATCAGAAAATGATCGAGGCAAATCCTGGGAATTCAATGCTTTTGAGCAATTATGCACGGTTCTTGAAAGAGGTATATCCAATTGCTATATCATTGAAGAAAAACTCTTATCTAATTTCGAACATTACTGGTTTTTGGTATTTACAATGATTTTTACGGGTAATAGGTACGTGGGGATCTTGTAAAAGCTCAAGAATATTGTGGAAGGGCGATTTTGAGCAATCCAGGCGATGGTAATGTCTTGTCTATGTACGCTGATCTGATATGGGAAACTCAGAAGGACACTCCAAGAGCCGAGAGTTACTTCAATCAAGCCGTTCAAGCTGCCCCTAATGACTGGTAAGCTTTTAGATTATTTGATGATGAACTTCACACTTTTTCATGAGAGTTATGGTTGTTTAATGTCATATTGATTGCTCTTATGGTGCAGCTATGTTCTAGCATCATATGCACGGTTTCTTTGGGATGCTGAAGAAGACGAAGAAGAAGATGGCTTAATCGAAAAGCCAGCGACAAGCTTCTTTCAAGGAGTTCATACCCCACCTCCTCTTGCTGCCGCATCTTAA

mRNA sequence

ATCTTTGTTTGGAGCCACATTACCGACTAACTAGTTGCTAAAAGAGAAAACCAAACAGCCAAACTTTGTGCGTACACGGTTTTCTTGGTCCTCACACACCCGACGTCTCAGATTTCATATTCAATTGCCACTAATTCTCCTATAAAAATACCAGGCGCTACCGCCATTGTGAAGGAACTGATACATACCAGGCAAGAACAACTTCATATGCAATAACAAGCTCAAGAATACCTTCGAAACAATGATTCTGAGAAGCGCTTCGACTCCCCTCTTCAATTCATGGTTACACCATTCAAGAGATTCATACCTGGAGCCGGAGATCGTGAACCAAATCCCTAGGGCGCGTTCCATTGTGCTCTGTTGCTCACCCAGTTGCACATCTCCGATAATCGATGACTCACCCAGGAAGATTACTCGGGCGTTGTCCGAGACGGATCTTCGAGACATGTCCATGAATAAGATGAAACCCTTTAGCAGAACTCTGAGTGGGTTTTCTGAGGTTGACGAAGAGAGGGATGTAATCGGGTTTAGCCGCTCCAAAACGGCGTCGTTGAGGCGTGAATCGATTTCTGAAACTGGGGATAGGGATGGTGGGTTTGTTAATGTTCTGGTTGGTGGTGGAGTTGGTGGTAGTGGTGGAAGGATCAGTGGCGGCGGAGGATCCGACGGTGGCGACGATGGGAGTTTCGGGATTGGAGATTCGAATCATGGAAATGACAATACGGATCTGCACTATCAGAAAATGATCGAGGCAAATCCTGGGAATTCAATGCTTTTGAGCAATTATGCACGGTTCTTGAAAGAGGTACGTGGGGATCTTGTAAAAGCTCAAGAATATTGTGGAAGGGCGATTTTGAGCAATCCAGGCGATGGTAATGTCTTGTCTATGTACGCTGATCTGATATGGGAAACTCAGAAGGACACTCCAAGAGCCGAGAGTTACTTCAATCAAGCCGTTCAAGCTGCCCCTAATGACTGCTATGTTCTAGCATCATATGCACGGTTTCTTTGGGATGCTGAAGAAGACGAAGAAGAAGATGGCTTAATCGAAAAGCCAGCGACAAGCTTCTTTCAAGGAGTTCATACCCCACCTCCTCTTGCTGCCGCATCTTAA

Coding sequence (CDS)

ATGATTCTGAGAAGCGCTTCGACTCCCCTCTTCAATTCATGGTTACACCATTCAAGAGATTCATACCTGGAGCCGGAGATCGTGAACCAAATCCCTAGGGCGCGTTCCATTGTGCTCTGTTGCTCACCCAGTTGCACATCTCCGATAATCGATGACTCACCCAGGAAGATTACTCGGGCGTTGTCCGAGACGGATCTTCGAGACATGTCCATGAATAAGATGAAACCCTTTAGCAGAACTCTGAGTGGGTTTTCTGAGGTTGACGAAGAGAGGGATGTAATCGGGTTTAGCCGCTCCAAAACGGCGTCGTTGAGGCGTGAATCGATTTCTGAAACTGGGGATAGGGATGGTGGGTTTGTTAATGTTCTGGTTGGTGGTGGAGTTGGTGGTAGTGGTGGAAGGATCAGTGGCGGCGGAGGATCCGACGGTGGCGACGATGGGAGTTTCGGGATTGGAGATTCGAATCATGGAAATGACAATACGGATCTGCACTATCAGAAAATGATCGAGGCAAATCCTGGGAATTCAATGCTTTTGAGCAATTATGCACGGTTCTTGAAAGAGGTACGTGGGGATCTTGTAAAAGCTCAAGAATATTGTGGAAGGGCGATTTTGAGCAATCCAGGCGATGGTAATGTCTTGTCTATGTACGCTGATCTGATATGGGAAACTCAGAAGGACACTCCAAGAGCCGAGAGTTACTTCAATCAAGCCGTTCAAGCTGCCCCTAATGACTGCTATGTTCTAGCATCATATGCACGGTTTCTTTGGGATGCTGAAGAAGACGAAGAAGAAGATGGCTTAATCGAAAAGCCAGCGACAAGCTTCTTTCAAGGAGTTCATACCCCACCTCCTCTTGCTGCCGCATCTTAA

Protein sequence

MILRSASTPLFNSWLHHSRDSYLEPEIVNQIPRARSIVLCCSPSCTSPIIDDSPRKITRALSETDLRDMSMNKMKPFSRTLSGFSEVDEERDVIGFSRSKTASLRRESISETGDRDGGFVNVLVGGGVGGSGGRISGGGGSDGGDDGSFGIGDSNHGNDNTDLHYQKMIEANPGNSMLLSNYARFLKEVRGDLVKAQEYCGRAILSNPGDGNVLSMYADLIWETQKDTPRAESYFNQAVQAAPNDCYVLASYARFLWDAEEDEEEDGLIEKPATSFFQGVHTPPPLAAAS
Homology
BLAST of CmaCh11G005400 vs. TAIR 10
Match: AT5G20190.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 241.5 bits (615), Expect = 8.4e-64
Identity = 151/278 (54.32%), Postives = 189/278 (67.99%), Query Frame = 0

Query: 1   MILRSASTPLFNSWLHHS--RDSYLEP-EIVNQIPRARSIVLCCSPS--CTSPI----ID 60
           M+LRSASTPL NS +H S  RDS +E  E V+QI R RSI L  S S  C SP+     D
Sbjct: 1   MLLRSASTPLLNSLVHVSSPRDSPIETVESVHQIQRHRSITLSASSSSCCYSPMSVHSSD 60

Query: 61  DSPRKITRALSETDLRDMSMNKMKPFSRTLSGFSEVDEERDVIGFSRSKTASLRRESISE 120
           DS R++ R  S++DLR ++  K  P S+ LSG + +++  + IGF   +T+S   + IS 
Sbjct: 61  DSSRRMKRTASDSDLRHLTSTK-PPVSKFLSGGALMEDVDEGIGFGLIRTSSY--DGISW 120

Query: 121 TGDRDGGFVNVLVGGGVGG---SGGRISGGGGSDGGDDGSFGIGDSNHGNDNTDLHYQKM 180
             D D      + GGG GG    GG+   GG SDGGD           G+DNTD+HY+KM
Sbjct: 121 ALDED----TEVAGGGGGGMFHGGGKGRSGGRSDGGDG----------GDDNTDVHYRKM 180

Query: 181 IEANPGNSMLLSNYARFLKEVRGDLVKAQEYCGRAILSNPGDGNVLSMYADLIWETQKDT 240
           IEANPGN + LSNYA+FLKEVR D +KA+EYCGRAIL +P DGNVL+MYA+L+W+  KD+
Sbjct: 181 IEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAELVWKIHKDS 240

Query: 241 PRAESYFNQAVQAAPNDCYVLASYARFLWDAEEDEEED 267
            RAE+YFNQAV AAP DCYV ASYARFLWDAEE+EEE+
Sbjct: 241 SRAENYFNQAVAAAPEDCYVQASYARFLWDAEEEEEEE 261

BLAST of CmaCh11G005400 vs. TAIR 10
Match: AT1G80130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 188.3 bits (477), Expect = 8.4e-48
Identity = 131/301 (43.52%), Postives = 175/301 (58.14%), Query Frame = 0

Query: 1   MILRSASTPLFNSWL--HHSRDSYLEPEIVNQI-PRARSIVLCCSPSCTSPIIDDSPRKI 60
           M+LRS S P+ NSWL  H SR+S  EPE  +Q+  R+ S+ L  S S    I   +  ++
Sbjct: 1   MLLRSTSAPILNSWLPQHCSRESSPEPE--SQLWRRSTSLSLFSSKS----IDGHTGEQL 60

Query: 61  TRALSETDLRDMSMNKMKPFSRTLSGFSEVDEERDVIGFSRSKTASLRRES-------IS 120
            +ALS  D +++ + K K    +    +   + R  +  +R    +L R S        S
Sbjct: 61  HQALS--DNKEIIILKSKSNEHSYKTPTSSRQRRSSLDETRYTKKTLDRSSPFLVERLFS 120

Query: 121 ETGDRDGGFVN----VLV---GGGVGGSGGRISGGGGSDGGDDGSFGIGDSNHGNDNTDL 180
            +G  D    N     LV   GGG+GGSGG I  GGG  GG     G+ D     D TD 
Sbjct: 121 SSGQGDKASSNDRLETLVSGGGGGMGGSGGNICNGGGGVGGS----GV-DGGRSEDATDT 180

Query: 181 HYQKMIEANPGNSMLLSNYARFLKEVRGDLVKAQEYCGRAILSNPGDGNVLSMYADLIWE 240
           +Y++MI++NPGNS+L  NYA+FLKEV+GD+ KA+EYC RAIL N  DGNVLS+YADLI  
Sbjct: 181 YYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYADLILH 240

Query: 241 TQKDTPRAESYFNQAVQAAPNDCYVLASYARFLWDAEEDEEEDGLIEKPATSFFQGVHTP 285
             +D  RA SY+ QAV+ +P DCYV ASYARFLWD +EDEE++ L E+      +  H P
Sbjct: 241 NHQDRQRAHSYYKQAVKMSPEDCYVQASYARFLWDVDEDEEDEALGEEEENLSDETGHVP 288

BLAST of CmaCh11G005400 vs. TAIR 10
Match: AT4G32340.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 147.9 bits (372), Expect = 1.3e-35
Identity = 109/267 (40.82%), Postives = 153/267 (57.30%), Query Frame = 0

Query: 1   MILRSASTPLFNSWLHHSRDSYLEPEIVNQIPRARSIVLCCSPSCTSPIIDDSPRKITRA 60
           MI+RSAS+      L  +  +  +P +   +  AR++      S  +P +    + ITRA
Sbjct: 1   MIMRSASS------LDLNLRAAQKPSVPRVVTTARTV------SAATPRV---AKPITRA 60

Query: 61  LSETDLRDMSMNKMKPFSRTLSGFSEVDEERDVIGFSRSKTASLRRESISETGDRDGGFV 120
            S+ +L    +   +  ++T+S + E             +TASLR   + E      G  
Sbjct: 61  SSDGNL--YKIQSPESITKTISVYHE-------------ETASLR---VLEGSRLPQGGS 120

Query: 121 NVLVGGGVGGSGGRISGGGGSDGGDDGSFGIGDSNHGNDNTDLHYQKMIEANPGNSMLLS 180
           N    GG GG GG  +GGGG  GG               + D +Y++MI+  PG+++LLS
Sbjct: 121 N----GGFGGRGGDGAGGGGGGGG--------------GSVDGYYEEMIQRYPGDTLLLS 180

Query: 181 NYARFLKEVRGDLVKAQEYCGRAILSNPG-DGNVLSMYADLIWETQKDTPRAESYFNQAV 240
           NYARFLKEV+GD  KA+EYC RA+LS  G DG +LSMY DLIW+   D  RA+SY++QAV
Sbjct: 181 NYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLSMYGDLIWKNHGDGVRAQSYYDQAV 216

Query: 241 QAAPNDCYVLASYARFLWDAEEDEEED 267
           Q++P+DC VLASYARFLWDAEE+ EE+
Sbjct: 241 QSSPDDCNVLASYARFLWDAEEEVEEE 216

BLAST of CmaCh11G005400 vs. TAIR 10
Match: AT4G17940.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 141.7 bits (356), Expect = 9.0e-34
Identity = 90/206 (43.69%), Postives = 114/206 (55.34%), Query Frame = 0

Query: 83  GFSEVDEERDVIGFSR------SKTASLRRESISETGDRDGGFVN--------------- 142
           G   V  E DVI   R      SK +  R     E G+ +  F +               
Sbjct: 60  GMRRVLSESDVIRSERMLKRVGSKPSPARIPEDDEAGEEEIRFADGWGSMISGGLPVEEK 119

Query: 143 VLVGGGVGGSGGRISG-GGGSDGGDDGSFGIGDSNHGNDNTDLHYQKMIEANPGNSMLLS 202
              GGGVGG  G   G G G  GG +    IGD          +Y++M+ +NP NS+LL 
Sbjct: 120 CFTGGGVGGGSGYSGGYGNGGGGGYEDKSKIGD----------YYREMLRSNPNNSLLLM 179

Query: 203 NYARFLKEVRGDLVKAQEYCGRAILSNPGDGNVLSMYADLIWETQKDTPRAESYFNQAVQ 262
           NY +FL EV  D   A+EY GRAIL NPGDG  LSMY  LIWET++D  RA+ YF+QAV 
Sbjct: 180 NYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRLIWETKRDEKRAQGYFDQAVN 239

Query: 263 AAPNDCYVLASYARFLWDAEEDEEED 267
           A+PNDC VL SYARF+W+AE+D+++D
Sbjct: 240 ASPNDCMVLGSYARFMWEAEDDDDDD 255

BLAST of CmaCh11G005400 vs. TAIR 10
Match: AT1G04530.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 93.2 bits (230), Expect = 3.7e-19
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = 0

Query: 150 GIGDSNHGNDNTDLHYQKMIEANPGNSMLLSNYARFLKEVRGDLVKAQEYCGRAILSNPG 209
           G  D N G+     +Y+ M+E  P + +LL NYA+FL E +GDL  A+EY  +  +  P 
Sbjct: 115 GYDDKNCGD-----YYKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHKCTVVEPS 174

Query: 210 DGNVLSMYADLIWETQKDTPRAESYFNQAVQAAPNDCYVLASYARFLWD--AEEDEEED 267
           DG  L+ Y  L+ +  +D  +A SYF +AVQA+P+D  VLA+YA FLW+  A++D+E+D
Sbjct: 175 DGVALANYGRLVMKLHQDEAKAMSYFERAVQASPDDSIVLAAYASFLWEINADDDDEDD 227

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT5G20190.18.4e-6454.32Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G80130.18.4e-4843.52Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G32340.11.3e-3540.82Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G17940.19.0e-3443.69Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G04530.13.7e-1942.86Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 154..278
e-value: 9.4E-14
score: 53.2
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 164..263
NoneNo IPR availablePFAMPF13431TPR_17coord: 165..198
e-value: 1.2E-4
score: 22.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..157
NoneNo IPR availablePANTHERPTHR26312TETRATRICOPEPTIDE REPEAT PROTEIN 5coord: 1..279
NoneNo IPR availablePANTHERPTHR26312:SF73TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEINcoord: 1..279

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G005400.1CmaCh11G005400.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding