CmaCh11G005370 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G005370
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	nuclear pore complex protein NUP1-like isoform X1
Location	Cma_Chr11: 2591506 .. 2598226 (-)
RNA-Seq Expression	CmaCh11G005370
Synteny	CmaCh11G005370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTCAGTCGTCGCCACAAAGTCGAGTCGGCATATTTTCGAAGAGAAAAAGAAGCGAAAAACAGTCGACGCGCGGTGTTATACTGCGAGCAGCCACCACTCAAGGCAGAGCCCCTGTGTCAGATTTAACATGGAGAGGGCGGAGGTAAGGGCGTCGTCGACACCGTACGGTGGAGGAGGAGTTGGAGGAAAGGTTCGGAAGCCAATCTCAAGAAAGCCGCCGCCTACCCCTTACGCTCGGCCGGAGCAAAACCAACCGCAAAGGCGGTGGCTTTCGAAGCTTGTTGATCCGGCTTACCGGCTCATCACCGGCGGCGCCACACGACTTCTTCCTTATTTGTTCTCTAAATCACTGCCCTCCAATGCCCTTCCGTGTCCAGGAGATGAAGATCAAGGTCATTTGCCTCCTCCCCCGATCTTCTCTCTCAAGTTTCCTATTTACTGCGACCTATCTAGGGTTTTGGAAATCGCATTTGAAATCAATATTATTTTTGTACTCTCTATTTTAGGCATTTGGGGGAAATTGATGGTTTTTCTGATGATAGTGACTAGTGAGGTTTCTAAATCTCTTCCCCCTCAGTAAACATCTTGTTGCATTTGCAATGTGACATTTCTAATTCACGTAGGTGAAACAAAATATTGTATTTGTAGCTATGCTTTGCAGTGCTGGATGCATTTATCTAAAGGACATTGTTTACACCAGACTCCATAGAATGTTATTATTGGTTTTGTTTGTACATCATGTTGCAAGACTAGGTGTTGATGATGTATTCTTTTTTAGCAGATCACGTCGAGGCAGAATTGGAGGATAACGCCCCTGGAGAAGAACTCCGCAATGTAAATGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCTTTTTGTTACATTTGTGCGGTTCCATGGCTTTTGAGCACATTCCTTTATATGCCATCTCACGAATGAGTATCGGGGTATTGCTTTGATTACAGACAAACGAACAATCGGTATTCATAAATGCGTATTGGGGTTGTGTCGTTCAATGAAATTGAAAGCAATGGAAATAAAGTCATAGGGGAAGGGTTACCTACTCTTAGCAGTCACTTTTCACTGGTGGTTGTCATACTTTGATTAGTGTGTAATCTAGAAGGTTATGACTGTTTTTACCTTGCAAGGGCGCTCATGTGTGTCTGAACTATGCTATTCAATTTGAGTCCTGTTTGATAATCACTTGGTTTTTGGTTTTTGAAAATTAAGCTTTTAAACACACTTCCACCTATTAGTTTCTTTGTTTTGTTATCTACTCTTTACGAATGTTTAAACATCCAAAGTAAGTTTTGGAAACTAAAATAGTAGTTTTTAAAACTACACATATATATTGATTTGACTAAGAATTCAAATACTTTCTTAAGAAAGATGGAAACAATAATAAGAAATAGTGAGAAAACAATCACAATTTCTAAAAACTAAAAACAAAACAAAATGGTTGTCAAATGGGACCTTATTAATTTTATTTTATCTACTTGATATAGTTGTTTTTCTCTCGTTTTCCTTTCCTGTATTGCGATATTCTTACCCTGATCCTGATGGGTTGGAGTTACTAATCACAATTTCTCATGGGATGATTATCTATGTCCTGTTTTTTCTTTCATTTTAGTCAATTTTACTTTTCATTTTGAAAAATGATATCCATGCAGTAATGTGATTCACTAACATGCATTTTGCTTCATGTCTTGCAGCAAGGTGCATCTACCTTAGATGGATTACCAGGTCCTAGTGGAGAGGCTTGTAGATCAAATAACAATTCTGATGTTAATGGCCGCCAAAATGACAGAGAAACTGATGCATTAGCTGGAAATGGGAATTTTGATATTGAAAAATGGATCCAAGGAAAAACATTTTCAAGGTAAATCAGAGTGTGACCATTTTGTCTGCTCTATAGGAAAAAAGTGAGTGTCATTTATTGTGTCTAAGAAGCATGGACATGGGCACAGTCCAACATGATACTGATATAGATATGATAACTCATTATCTAAAAAACTTAGACAGGCACGACAAAGATTTTTTTAGTAAAACATCTATTTTCAGATAAAGAATTTATCTTAATTCACAAAATTGGTGTTTAAGTTTATTTGAAAATGTTGTAATATGCAATATCTTAAAGAAGTTGAAGAAGCCAATTGTGTGTATTTGACTGTGCAGTTCCTTATGGTACAATTATGTTTATACGATTATATGCTGACTGATAGATCTGATATTTTTCTTTGTTAATTTTTCCCCATCTTTTTATTAGTCAATTACCTTTAAAAAAGGTATAAGAAAGTGCCCAGCATCAACACATACTTGAGTAGAATCTGAATGTGCTCAACATGTAAGACACAGACATGTTCCCTAAAGTACATCTTGCGTTCATCTTCAATTTTTTTTGCATCGCAGGCTTTAGTCGAAGTGTTTCCTTGTTGAATGAATTGAAACGTTATTGTGAAGGAACTTATTTTATCCCTGATGGAAGTACATTCTCCTGCTAGAGTAATAGGTCTATTGCTTCTGAGGTCAAAGGTCCATGTATAATGGTCTCAATAATTTCATTTCTAATCATATTTAACAGCATTATTGTTCTACCATAAAGTGGTAGTGGCTTGGTGCGTCTATGTCTCTTTTGATCCTCCTATACATTGTCTACTGCCACATAGCCAGTTTGAGTACTTGATTTCTTTAATTGGCTGATTTTGCTATGCAGGGATGAAGTGAGTCGTTTGTTAGAGATAATACAATCAAGGGCTCTTGAACCTTCTAAGAAAGTGGAAGACAATAAAATTTCACCACGGAGCATTGAAAAACAATCTGAGCAGCCACCTGCTGCAAATAGAGTTATAAAAATGCCTCATGAAGAAAAGAAAGAAGATTTGGAGAGAGCTACATGGGGAAACTTAACTCCTCATCCACATTCATCGGTTAGTAGGGTGAATCCTTGAGCAGTTCCTGTAGAAAATAAGTATAAATATCTCATGGCTGTCTTGTTTCTCTGATAGGTTTTATTAGCCCATGCTATATTTAGTAATTATTTTTTTTCCATTTGAATATCAACAAATCACCCTAGGTACTCTTTTGTATTCATTAATGGTATGATGTATAAAACACCAAGACGTCTTATTTAATTTTGAAATGGACAAAAACCAGATGAAACTGATGAATGCATTATCCATAACTATGCGATAACTAGGTTGTTCGTATTTATATTTTTATTCTGGTTGTTGTTTTAGTACTGTTCTTATTAATTAATAAAAAATTGTATTGATGATATTCTGAAAATCAAATCATACTAGTGTTGATGATACCAAAGAAAAACCCACCTCAAGCTATGATTACAAATGACCCGACTACTAGATAAAAAAAAACGTCCTCTCTGTTAGAAATATGGTAAATTTGGTTGATGTCTGAAAGTTCATCGGCAAATAAGAAATTAAAGTTCTGGAATGGGGATTTGTACAAGAACCTAATAAATTATTTTTGCCAGAATCTTCAATATTTGTTCACTGTTAAGAGTGTTATTAACGTTTTTCTGTCTCTAATAATTTAACCTTGGATGTATTGGCAGACACTAAATGCAGTTGGAGCATCACCTGTGGATATTGCTAGAGCATACATGAGCAACAGGAAATCTGAACCGGGCTTGCTTTCTGACAAGATTCCTGATGATGAAAGGACTTTGCTTAATGGTGACCATCAAATGTCAAAGTCCTTTATTCCATTCATGTCCCCCAATCCATCAACTTGTTGGCCTGGTGCCATGTCAGAAAGTCAGCGTAGTTATTTAACTCCAAGAAGTCAAAGAGGTAGATTTGGAACTCATAATTTCCCACGGACTCCATATTCTAGGAGTATCTTTTCGAAGTCTAAGTCCAAGGTTTGTAGACATGGCCTTTGATTCCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTTTTTTTTTTTTTTTTTGTCGTGACAAGTGTATGTACAGTAAGCAGACTGCATATGTTAACCATGCTTTTGCATGTTAACAGCTAACTCAGTTGCAAGGAGATACCCAAAAGTTTGTGAATACACCATCTCCTCTCTGGCAGCAGTCACTAACTCCAGCTTATTCTCAGGTAATTCTTGTTTCATTAAGCACTCGATGACTAAAAGCCAATAATATTACCCAAGGAACTCTTGTTGAAAAATTCCTTTGTAGCATTTTCTTGGGCTTCAGTGCTGGAAATTTTTTTCGTATCCATAATATGCCAACATTTAAGGTAGTATTAAAGATGATCCTTGTAGCCAGCGGAATAAAAGCTGAAATATTATAGAGAACTGGAGTTTAAATTTTGTGTATATATGCGTTACAGGGTAGAGCTATAATTTTTGCTGGTGGGCAATATTTTGCATCAGAACTTTTTATATACCTGATGTTTTAATTTTGAAATTTGAAGGCGCATATTAGAGGAAAAACTTTTAACACAACTTTACGTTTCTATGCTTTGTCTGGTGCCCGTATTGAGTATATCATTGATATCTTAGTCTTAACCCAATTCACCTTTTCTTACTTCTGTCATTACTTTTTTTTTCTGTTGGCCTATATAGATGACATCAAGCAATGATCCATTCGATGAGGCAACTGGTTCCATTGGTCCATTTCGTAGGCTTGGGCGTAAGGCATCTGCAGTTACTAATTCTAGACGATCTGCTTACCATTATCCAACCCGCCAAGCAGAGACAAAGGTAGAAAATTCCAATATTTCGGAAGGGATTCTACCTGATATGAAGAAGAATCTGGAACTTGGGGGAGCAAGTACCATTCCTCTATCACCCTCAGTGGGAAACAACAGCTCTGAGTCAAGTCTTCTGACTGTCCGTCCACAGTCCAGTCAGGTTGCTAGGACAATCCTAGAGCATATCAGTAGAAACCCACCTACTCCTAAAGAAAAGAATGAAGAGTTAAAGAGAGCAATAGAATGGAAGAGAACCCCATCTTCCAGTGTACAAACGATCAAGCCAAATGAAACTATTAGTTTGGCTGTAGAGTTAGACTCTCGGCAAAATGTGAACCAAGTAGATCAGAACTGCCACCCCACATTGAGCAATAAGGGGAAAACCGTGTCCACGATTCATCTAGAGTCGAGTGCTGGCAGAAATTCTGATGCTGTAAACCAAAATTCCTCCGATCTAAGGTTTAGGCTTAGCAATGCTGATTCGAAATACAAGGATGACGCAGGCCTAAAAATTAATAGCTCGTCGCCTAAGGTATCATCTTAACTTTGTAATAGGTTCAATTCTGTGATGATGGACATACAGATGCTTTCATTTATTTACTTAGAAATTACTAGCATAAGCTTGAAGAATTCTTAATTGCTTGTTGAATTCATGGGCAGGATTTTCCTCCGAAGAAGATCGTTCCAGCTCTTGGATCAGAAGTGGGAACTCAAATGAAGCCTTTCTCCTCTCTTGGAACTAAGCCAGGTTTTCCATCCATTACCATCAAGAAGCCCGAGTCAGGGTGGACAATTTCTCCTGACAGTGGTTCGGCATTTACATTCCCTGTTTCGGGCGCATCCTCGGGAATGATCTCAGAACCGCCAACACCGTCCATCTTTCCCTCAACCAGCATTGGGGGCAGTCAGCCTCTGTTATTGAAGACTGAGAATGCAGTTCCTTCATACAGTTTTGGCTCAAAGAAGTCCAGCCCTACTCTTGTTTTCTCATTCCCTTCAACAAACAGCAATACAATCTCCAGCGACGCCTCAAATATCAAGTTCAGCTTTGGGTCGGATGATCATACAAGACTCTCATTTAGTTCCGTCGGAAAAGATGCAGTTTGTTGCTAACTGATTAGACTTGTCAAATATAGTTTTTGATCTTGCGCTTGTGGGTACGACTAGAGTATCCAAACGAGGAAAGAAAATTGTTTCAAAAACCCTTTTTTTATAAAAAAAACAAATAGAAAATTGAAAATTCATTGCTAGTTTAATGAATAAAAT

mRNA sequence

ATGGGCTCAGTCGTCGCCACAAAGTCGAGTCGGCATATTTTCGAAGAGAAAAAGAAGCGAAAAACAGTCGACGCGCGGTGTTATACTGCGAGCAGCCACCACTCAAGGCAGAGCCCCTGTGTCAGATTTAACATGGAGAGGGCGGAGGTAAGGGCGTCGTCGACACCGTACGGTGGAGGAGGAGTTGGAGGAAAGGTTCGGAAGCCAATCTCAAGAAAGCCGCCGCCTACCCCTTACGCTCGGCCGGAGCAAAACCAACCGCAAAGGCGGTGGCTTTCGAAGCTTGTTGATCCGGCTTACCGGCTCATCACCGGCGGCGCCACACGACTTCTTCCTTATTTGTTCTCTAAATCACTGCCCTCCAATGCCCTTCCGTGTCCAGGAGATGAAGATCAAGATCACGTCGAGGCAGAATTGGAGGATAACGCCCCTGGAGAAGAACTCCGCAATCAAGGTGCATCTACCTTAGATGGATTACCAGGTCCTAGTGGAGAGGCTTGTAGATCAAATAACAATTCTGATGTTAATGGCCGCCAAAATGACAGAGAAACTGATGCATTAGCTGGAAATGGGAATTTTGATATTGAAAAATGGATCCAAGGAAAAACATTTTCAAGGGATGAAGTGAGTCGTTTGTTAGAGATAATACAATCAAGGGCTCTTGAACCTTCTAAGAAAGTGGAAGACAATAAAATTTCACCACGGAGCATTGAAAAACAATCTGAGCAGCCACCTGCTGCAAATAGAGTTATAAAAATGCCTCATGAAGAAAAGAAAGAAGATTTGGAGAGAGCTACATGGGGAAACTTAACTCCTCATCCACATTCATCGACACTAAATGCAGTTGGAGCATCACCTGTGGATATTGCTAGAGCATACATGAGCAACAGGAAATCTGAACCGGGCTTGCTTTCTGACAAGATTCCTGATGATGAAAGGACTTTGCTTAATGGTGACCATCAAATGTCAAAGTCCTTTATTCCATTCATGTCCCCCAATCCATCAACTTGTTGGCCTGGTGCCATGTCAGAAAGTCAGCGTAGTTATTTAACTCCAAGAAGTCAAAGAGGTAGATTTGGAACTCATAATTTCCCACGGACTCCATATTCTAGGAGTATCTTTTCGAAGTCTAAGTCCAAGCTAACTCAGTTGCAAGGAGATACCCAAAAGTTTGTGAATACACCATCTCCTCTCTGGCAGCAGTCACTAACTCCAGCTTATTCTCAGATGACATCAAGCAATGATCCATTCGATGAGGCAACTGGTTCCATTGGTCCATTTCGTAGGCTTGGGCGTAAGGCATCTGCAGTTACTAATTCTAGACGATCTGCTTACCATTATCCAACCCGCCAAGCAGAGACAAAGGTAGAAAATTCCAATATTTCGGAAGGGATTCTACCTGATATGAAGAAGAATCTGGAACTTGGGGGAGCAAGTACCATTCCTCTATCACCCTCAGTGGGAAACAACAGCTCTGAGTCAAGTCTTCTGACTGTCCGTCCACAGTCCAGTCAGGTTGCTAGGACAATCCTAGAGCATATCAGTAGAAACCCACCTACTCCTAAAGAAAAGAATGAAGAGTTAAAGAGAGCAATAGAATGGAAGAGAACCCCATCTTCCAGTGTACAAACGATCAAGCCAAATGAAACTATTAGTTTGGCTGTAGAGTTAGACTCTCGGCAAAATGTGAACCAAGTAGATCAGAACTGCCACCCCACATTGAGCAATAAGGGGAAAACCGTGTCCACGATTCATCTAGAGTCGAGTGCTGGCAGAAATTCTGATGCTGTAAACCAAAATTCCTCCGATCTAAGGTTTAGGCTTAGCAATGCTGATTCGAAATACAAGGATGACGCAGGCCTAAAAATTAATAGCTCGTCGCCTAAGGATTTTCCTCCGAAGAAGATCGTTCCAGCTCTTGGATCAGAAGTGGGAACTCAAATGAAGCCTTTCTCCTCTCTTGGAACTAAGCCAGGTTTTCCATCCATTACCATCAAGAAGCCCGAGTCAGGGTGGACAATTTCTCCTGACAGTGGTTCGGCATTTACATTCCCTGTTTCGGGCGCATCCTCGGGAATGATCTCAGAACCGCCAACACCGTCCATCTTTCCCTCAACCAGCATTGGGGGCAGTCAGCCTCTGTTATTGAAGACTGAGAATGCAGTTCCTTCATACAGTTTTGGCTCAAAGAAGTCCAGCCCTACTCTTGTTTTCTCATTCCCTTCAACAAACAGCAATACAATCTCCAGCGACGCCTCAAATATCAAGTTCAGCTTTGGGTCGGATGATCATACAAGACTCTCATTTAGTTCCGTCGGAAAAGATGCAGTTTGTTGCTAACTGATTAGACTTGTCAAATATAGTTTTTGATCTTGCGCTTGTGGGTACGACTAGAGTATCCAAACGAGGAAAGAAAATTGTTTCAAAAACCCTTTTTTTATAAAAAAAACAAATAGAAAATTGAAAATTCATTGCTAGTTTAATGAATAAAAT

Coding sequence (CDS)

ATGGGCTCAGTCGTCGCCACAAAGTCGAGTCGGCATATTTTCGAAGAGAAAAAGAAGCGAAAAACAGTCGACGCGCGGTGTTATACTGCGAGCAGCCACCACTCAAGGCAGAGCCCCTGTGTCAGATTTAACATGGAGAGGGCGGAGGTAAGGGCGTCGTCGACACCGTACGGTGGAGGAGGAGTTGGAGGAAAGGTTCGGAAGCCAATCTCAAGAAAGCCGCCGCCTACCCCTTACGCTCGGCCGGAGCAAAACCAACCGCAAAGGCGGTGGCTTTCGAAGCTTGTTGATCCGGCTTACCGGCTCATCACCGGCGGCGCCACACGACTTCTTCCTTATTTGTTCTCTAAATCACTGCCCTCCAATGCCCTTCCGTGTCCAGGAGATGAAGATCAAGATCACGTCGAGGCAGAATTGGAGGATAACGCCCCTGGAGAAGAACTCCGCAATCAAGGTGCATCTACCTTAGATGGATTACCAGGTCCTAGTGGAGAGGCTTGTAGATCAAATAACAATTCTGATGTTAATGGCCGCCAAAATGACAGAGAAACTGATGCATTAGCTGGAAATGGGAATTTTGATATTGAAAAATGGATCCAAGGAAAAACATTTTCAAGGGATGAAGTGAGTCGTTTGTTAGAGATAATACAATCAAGGGCTCTTGAACCTTCTAAGAAAGTGGAAGACAATAAAATTTCACCACGGAGCATTGAAAAACAATCTGAGCAGCCACCTGCTGCAAATAGAGTTATAAAAATGCCTCATGAAGAAAAGAAAGAAGATTTGGAGAGAGCTACATGGGGAAACTTAACTCCTCATCCACATTCATCGACACTAAATGCAGTTGGAGCATCACCTGTGGATATTGCTAGAGCATACATGAGCAACAGGAAATCTGAACCGGGCTTGCTTTCTGACAAGATTCCTGATGATGAAAGGACTTTGCTTAATGGTGACCATCAAATGTCAAAGTCCTTTATTCCATTCATGTCCCCCAATCCATCAACTTGTTGGCCTGGTGCCATGTCAGAAAGTCAGCGTAGTTATTTAACTCCAAGAAGTCAAAGAGGTAGATTTGGAACTCATAATTTCCCACGGACTCCATATTCTAGGAGTATCTTTTCGAAGTCTAAGTCCAAGCTAACTCAGTTGCAAGGAGATACCCAAAAGTTTGTGAATACACCATCTCCTCTCTGGCAGCAGTCACTAACTCCAGCTTATTCTCAGATGACATCAAGCAATGATCCATTCGATGAGGCAACTGGTTCCATTGGTCCATTTCGTAGGCTTGGGCGTAAGGCATCTGCAGTTACTAATTCTAGACGATCTGCTTACCATTATCCAACCCGCCAAGCAGAGACAAAGGTAGAAAATTCCAATATTTCGGAAGGGATTCTACCTGATATGAAGAAGAATCTGGAACTTGGGGGAGCAAGTACCATTCCTCTATCACCCTCAGTGGGAAACAACAGCTCTGAGTCAAGTCTTCTGACTGTCCGTCCACAGTCCAGTCAGGTTGCTAGGACAATCCTAGAGCATATCAGTAGAAACCCACCTACTCCTAAAGAAAAGAATGAAGAGTTAAAGAGAGCAATAGAATGGAAGAGAACCCCATCTTCCAGTGTACAAACGATCAAGCCAAATGAAACTATTAGTTTGGCTGTAGAGTTAGACTCTCGGCAAAATGTGAACCAAGTAGATCAGAACTGCCACCCCACATTGAGCAATAAGGGGAAAACCGTGTCCACGATTCATCTAGAGTCGAGTGCTGGCAGAAATTCTGATGCTGTAAACCAAAATTCCTCCGATCTAAGGTTTAGGCTTAGCAATGCTGATTCGAAATACAAGGATGACGCAGGCCTAAAAATTAATAGCTCGTCGCCTAAGGATTTTCCTCCGAAGAAGATCGTTCCAGCTCTTGGATCAGAAGTGGGAACTCAAATGAAGCCTTTCTCCTCTCTTGGAACTAAGCCAGGTTTTCCATCCATTACCATCAAGAAGCCCGAGTCAGGGTGGACAATTTCTCCTGACAGTGGTTCGGCATTTACATTCCCTGTTTCGGGCGCATCCTCGGGAATGATCTCAGAACCGCCAACACCGTCCATCTTTCCCTCAACCAGCATTGGGGGCAGTCAGCCTCTGTTATTGAAGACTGAGAATGCAGTTCCTTCATACAGTTTTGGCTCAAAGAAGTCCAGCCCTACTCTTGTTTTCTCATTCCCTTCAACAAACAGCAATACAATCTCCAGCGACGCCTCAAATATCAAGTTCAGCTTTGGGTCGGATGATCATACAAGACTCTCATTTAGTTCCGTCGGAAAAGATGCAGTTTGTTGCTAA

Protein sequence

MGSVVATKSSRHIFEEKKKRKTVDARCYTASSHHSRQSPCVRFNMERAEVRASSTPYGGGGVGGKVRKPISRKPPPTPYARPEQNQPQRRWLSKLVDPAYRLITGGATRLLPYLFSKSLPSNALPCPGDEDQDHVEAELEDNAPGEELRNQGASTLDGLPGPSGEACRSNNNSDVNGRQNDRETDALAGNGNFDIEKWIQGKTFSRDEVSRLLEIIQSRALEPSKKVEDNKISPRSIEKQSEQPPAANRVIKMPHEEKKEDLERATWGNLTPHPHSSTLNAVGASPVDIARAYMSNRKSEPGLLSDKIPDDERTLLNGDHQMSKSFIPFMSPNPSTCWPGAMSESQRSYLTPRSQRGRFGTHNFPRTPYSRSIFSKSKSKLTQLQGDTQKFVNTPSPLWQQSLTPAYSQMTSSNDPFDEATGSIGPFRRLGRKASAVTNSRRSAYHYPTRQAETKVENSNISEGILPDMKKNLELGGASTIPLSPSVGNNSSESSLLTVRPQSSQVARTILEHISRNPPTPKEKNEELKRAIEWKRTPSSSVQTIKPNETISLAVELDSRQNVNQVDQNCHPTLSNKGKTVSTIHLESSAGRNSDAVNQNSSDLRFRLSNADSKYKDDAGLKINSSSPKDFPPKKIVPALGSEVGTQMKPFSSLGTKPGFPSITIKKPESGWTISPDSGSAFTFPVSGASSGMISEPPTPSIFPSTSIGGSQPLLLKTENAVPSYSFGSKKSSPTLVFSFPSTNSNTISSDASNIKFSFGSDDHTRLSFSSVGKDAVCC

Homology

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BLAST of CmaCh11G005370 vs. ExPASy Swiss-Prot
Match: Q9CAF4 (Nuclear pore complex protein NUP1 OS=Arabidopsis thaliana OX=3702 GN=NUP1 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.0e-20
Identity = 193/760 (25.39%), Postives = 297/760 (39.08%), Query Frame = 0


Query: 53  SSTPYGGG-GVGGKVRKPISRKPPPTPYARPEQNQPQR----------RWLSKLVDPAYR 112
           SS PYGGG G GGK RKP +R+   TPY RP  +               WLSKLVDPA R
Sbjct: 9   SSNPYGGGLGTGGKFRKPTARRSQKTPYDRPTTSVRNAGLGGGDVRGGGWLSKLVDPAQR 68

Query: 113 LITGGATRLLPYLFSKSLPSNALPCPGDEDQDHVEAELEDNAPGEELRNQGASTLDGLPG 172
           LIT  A RL   L  K L S   P    E Q     +L +    +E +      +  L  
Sbjct: 69  LITYSAQRLFGSLSRKRLGSGETPLQSPEQQ----KQLPERGVNQETKVGHKEDVSNLSM 128

Query: 173 PSGEACRSNNNSDVNGRQNDRETDALAGNGNFDIEKWIQGKTFSRDEVSRLLEIIQSRAL 232
            +G     + N+ V+  +          +G  D+EK +QGKTF+R EV RL  +++S+A 
Sbjct: 129 KNGLIRMEDTNASVDPPK----------DGFTDLEKILQGKTFTRSEVDRLTTLLRSKAA 188

Query: 233 EPSKKVEDNKISPRSIEKQSEQPPAANRVIKMPHEEKKEDLERATWGNLTPHPHSS--TL 292
           + S   E+ +     +      PP+        HE  +   +  +   L   P  S  TL
Sbjct: 189 DSSTMNEEQR---NEVGMVVRHPPS--------HERDRTHPDNGSMNTLVSTPPGSLRTL 248

Query: 293 NAVGASPVDIARAYMSNRKSE--PGLLS--DKIPDDERTLLNGDHQMSKSFIPFMSPNPS 352
           +   ASP  +A+AYM +R SE  P +L    +   ++   LN      ++  P  SP  S
Sbjct: 249 DECIASPAQLAKAYMGSRPSEVTPSMLGLRGQAGREDSVFLN------RTPFPQKSPTMS 308

Query: 353 -TCWPGAMSESQRSYLTPRSQRGRFGTHNFPRTPYSRSIFSKSKSKLTQLQGDTQKFVNT 412
               P      +  ++TPRS RGR   ++  RTPYSR    +S  K+  L      F  +
Sbjct: 309 LVTKPSGQRPLENGFVTPRS-RGRSAVYSMARTPYSR---PQSSVKIGSL------FQAS 368

Query: 413 PSPLWQQSLTPAYSQ-----MTSSNDPFDEATGSIGPFRRLGRKASAVTNSRRSAYHYPT 472
           PS  W++SL     Q     +   +   D   GS+GP RR+ +K+           +  +
Sbjct: 369 PSK-WEESLPSGSRQGFQSGLKRRSSVLDNDIGSVGPVRRIRQKS-----------NLSS 428

Query: 473 RQAETKVENSNISEGILPDMKKNLELGGASTIPLSPSVGNNSSESSLLTVRPQSSQVART 532
           R     V  S +S      ++ N   GG  T   S     +   SS   V  +SS++A  
Sbjct: 429 RSLALPVSESPLS------VRAN---GGEKTTHTSKDSAEDIPGSSFNLVPTKSSEMASK 488

Query: 533 ILEH----ISRNPPTPKEKNEELKRAIEWKRTPSSSVQTIKPNETISLAVELDSRQNVNQ 592
           IL+     +S    +P + +  + R    K   +        N     A   DS     +
Sbjct: 489 ILQQLDKLVSTREKSPSKLSPSMLRGPALKSLQNVEAPKFLGNLPEKKANSPDSSYQKQE 548

Query: 593 VDQN--CHPTLSNKGKTVSTIHLESSAGRNSDAVNQNSSDLRFRLSNADSKYKDDAGLKI 652
           + +       L+   KT   +   S  G + D  +     +   L+N+  ++        
Sbjct: 549 ISRESVSREVLAQSEKTGDAVDGTSKTGSSKDQ-DMRGKGVYMPLTNSLEEHPPKK-RSF 608

Query: 653 NSSSPKDFPPKKIVPALGS-----EVGTQMKPFS--------SLGTKPGFPSITI----- 712
             S+ +DF   ++   LG+     EV  +   F          +G KP  PS  +     
Sbjct: 609 RMSAHEDF--LELDDDLGAASTPCEVAEKQNAFEVEKSHISMPIGEKPLTPSEAMPSTSY 668

Query: 713 ------KKPESGWTISPDSGSAFTFPVSGASSGMISEPPTPSIFPST---SIGGSQPLLL 754
                  +  S  ++  +      FP+       ++  PT      T   SI   +P   
Sbjct: 669 ISNGDASQGTSNGSLETERNKFVAFPIEAVQQSNMASEPTSKFIQGTEKSSISSGKP--T 698

[Close]

BLAST of CmaCh11G005370 vs. TAIR 10
Match: AT5G20200.1 (nucleoporin-related )

HSP 1 Score: 304.7 bits (779), Expect = 2.2e-82
Identity = 263/778 (33.80%), Postives = 388/778 (49.87%), Query Frame = 0


Query: 53  SSTPYGGGGVGGKVRKPISRKPPPTPYARPEQNQPQRR-WLSKLVDPAYRLITGGATRLL 112
           +++ Y  GGVGGK+++  +R+   TPY+RP QNQ QRR W+S++VDPAYR+I+GGATR+L
Sbjct: 15  TTSSYPTGGVGGKLKRQSARRHAATPYSRPTQNQVQRRPWISRIVDPAYRIISGGATRIL 74

Query: 113 PYLFSKSLPSNALPCPGDEDQDHVEAELEDNAPGEE-----LRNQGASTLDGLPGPSGEA 172
           PY FS +  + AL  P  EDQ+  + EL++N    +     + N+       + GPSG A
Sbjct: 75  PYFFSNAASAPALAAP-PEDQNQHQGELQNNPQDNDPSVTPISNKPEPASIEVGGPSGTA 134

Query: 173 CRSNNNSDVNGRQNDRE--TDALAGNGNFDIEKWIQGKTFSRDEVSRLLEIIQSRALEPS 232
             +  N  ++ ++  +    D +A +   ++E+ ++GKTFS+ E+ RL+E+I SRA++  
Sbjct: 135 NVNEGNFSISAQRRGKAALNDDVAIS---ELERLMEGKTFSQAEIDRLIEMISSRAID-- 194

Query: 233 KKVEDNKISPRSIEKQSEQPPAANRVI--KMPHEEKKEDLERATWGNLTPHPHSSTLNA- 292
             + D K   R++E    +    N  +  K       +D     W   TP   S  L+  
Sbjct: 195 --LPDVKRDERNLEIPLREGAKKNMSLFDKAKEPIGGKDANSEIWATPTPLAKSIILDGD 254

Query: 293 -----VGASPVDIARAYMSNRKSEPGLLSDKIPDDERTLLNGDHQMSKSFIPFMSPNPST 352
                VG SP ++A+AYM  + S        +  +E+  L+    + KS +   S  PS 
Sbjct: 255 KIRDEVGLSPAELAKAYMGGQTSSSS-SQGFVARNEKDCLDRSMLVGKSSLASPSSKPSA 314

Query: 353 CWPGAMSESQRSYLTPRSQRGRFGTHNFPRTPYSRSIFSKSKSKLTQLQGDTQKFV-NTP 412
           CWPG  S  Q  + TP+S+R  +G  NFPRTPYSR+I S SKSKL QLQ D+ K + N  
Sbjct: 315 CWPGIKSSEQSGFATPQSRRESYGLQNFPRTPYSRTILSNSKSKLMQLQNDSSKHLSNLQ 374

Query: 413 SPLWQQSLTPAYSQMTSSNDPFDEATGSIGPFRRLGRKASAVTNSRRSAYHYPTRQAETK 472
           SP   QS+   Y Q++   D      G  GP RR  + A   T S  S Y  P+R A ++
Sbjct: 375 SP--SQSVERRYGQLSKGRD-----GGLFGPSRRTRQSA---TPSMVSPYSRPSRGA-SR 434

Query: 473 VENSNISEGILPDMKKNLELGGASTIPLSPSV---GNNSSESSLLTVRPQSSQVARTILE 532
            ENS I         K+ E G +S +  S       +  +E   LTV   SSQ+ARTIL+
Sbjct: 435 FENSAI--------MKSSEAGESSYLSRSQITTYGKHKEAEVGTLTVPTHSSQIARTILD 494

Query: 533 HISR--NPPTPKEKNEELKRAIEWK--------RTPSSSVQTIKPNETISLAVELDSRQN 592
           H+ R  +  TPK K  ELK A  W+           SS V  +K + +  L  ++ +  +
Sbjct: 495 HLERTQSQSTPKNKTAELKLATSWRHPQSSKTVEKSSSDVTNVKKDGSAKLHEDIQNIFS 554

Query: 593 VNQVDQNCHPTLSNKGKTVSTIHLESSAG----RNSDAVNQNSSDLRFRLSNADSKYKDD 652
            NQ      P  +  G   + ++  +SA     R + A +   + L++            
Sbjct: 555 QNQPSSVLKPPATTTGDIQNGMNKTASATNGIFRGTQAASSGGNALQYEFGKPKGSLSRS 614

Query: 653 AGLKINSSSPKDFPPKKIVPALGSEVGTQMKPFS-SLG-TKPGFPSITIKKPESGWTISP 712
              ++ +SS      K +  + G E     KP S SLG  KP  PSI++ KP   W +  
Sbjct: 615 MHDELGTSSQD--AAKAVPYSFGGETANLPKPPSHSLGNNKPVLPSISVAKPFQKWAVPS 674

Query: 713 DSGSAFTFPVSGASSGMISEPPTPSIFPST-----SIGGSQPLL----LKTENAVPSYSF 772
            S + FTFPVS +     SEP TPSI P T     + GG   +      + +  +P +SF
Sbjct: 675 GSNAGFTFPVSSSDGTTSSEPTTPSIMPFTTSPPVASGGGVAITNHHEARKDYEIPQFSF 734

Query: 773 -GSKK--SSPTLVFSFPSTNSNTISSDAS---NIKFSFGSDDHTRLSFSSVGKDAVCC 780
            GS +      LVFSFPS +   +S D      IK++FGS+   R+SFSS G D VCC
Sbjct: 735 DGSNRRGDKSPLVFSFPSVSEEVVSEDDDARFGIKYTFGSEKPERISFSSAGSDGVCC 762

[Close]

BLAST of CmaCh11G005370 vs. TAIR 10
Match: AT3G10650.1 (BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink). )

HSP 1 Score: 102.1 bits (253), Expect = 2.1e-21
Identity = 193/760 (25.39%), Postives = 297/760 (39.08%), Query Frame = 0


Query: 53  SSTPYGGG-GVGGKVRKPISRKPPPTPYARPEQNQPQR----------RWLSKLVDPAYR 112
           SS PYGGG G GGK RKP +R+   TPY RP  +               WLSKLVDPA R
Sbjct: 9   SSNPYGGGLGTGGKFRKPTARRSQKTPYDRPTTSVRNAGLGGGDVRGGGWLSKLVDPAQR 68

Query: 113 LITGGATRLLPYLFSKSLPSNALPCPGDEDQDHVEAELEDNAPGEELRNQGASTLDGLPG 172
           LIT  A RL   L  K L S   P    E Q     +L +    +E +      +  L  
Sbjct: 69  LITYSAQRLFGSLSRKRLGSGETPLQSPEQQ----KQLPERGVNQETKVGHKEDVSNLSM 128

Query: 173 PSGEACRSNNNSDVNGRQNDRETDALAGNGNFDIEKWIQGKTFSRDEVSRLLEIIQSRAL 232
            +G     + N+ V+  +          +G  D+EK +QGKTF+R EV RL  +++S+A 
Sbjct: 129 KNGLIRMEDTNASVDPPK----------DGFTDLEKILQGKTFTRSEVDRLTTLLRSKAA 188

Query: 233 EPSKKVEDNKISPRSIEKQSEQPPAANRVIKMPHEEKKEDLERATWGNLTPHPHSS--TL 292
           + S   E+ +     +      PP+        HE  +   +  +   L   P  S  TL
Sbjct: 189 DSSTMNEEQR---NEVGMVVRHPPS--------HERDRTHPDNGSMNTLVSTPPGSLRTL 248

Query: 293 NAVGASPVDIARAYMSNRKSE--PGLLS--DKIPDDERTLLNGDHQMSKSFIPFMSPNPS 352
           +   ASP  +A+AYM +R SE  P +L    +   ++   LN      ++  P  SP  S
Sbjct: 249 DECIASPAQLAKAYMGSRPSEVTPSMLGLRGQAGREDSVFLN------RTPFPQKSPTMS 308

Query: 353 -TCWPGAMSESQRSYLTPRSQRGRFGTHNFPRTPYSRSIFSKSKSKLTQLQGDTQKFVNT 412
               P      +  ++TPRS RGR   ++  RTPYSR    +S  K+  L      F  +
Sbjct: 309 LVTKPSGQRPLENGFVTPRS-RGRSAVYSMARTPYSR---PQSSVKIGSL------FQAS 368

Query: 413 PSPLWQQSLTPAYSQ-----MTSSNDPFDEATGSIGPFRRLGRKASAVTNSRRSAYHYPT 472
           PS  W++SL     Q     +   +   D   GS+GP RR+ +K+           +  +
Sbjct: 369 PSK-WEESLPSGSRQGFQSGLKRRSSVLDNDIGSVGPVRRIRQKS-----------NLSS 428

Query: 473 RQAETKVENSNISEGILPDMKKNLELGGASTIPLSPSVGNNSSESSLLTVRPQSSQVART 532
           R     V  S +S      ++ N   GG  T   S     +   SS   V  +SS++A  
Sbjct: 429 RSLALPVSESPLS------VRAN---GGEKTTHTSKDSAEDIPGSSFNLVPTKSSEMASK 488

Query: 533 ILEH----ISRNPPTPKEKNEELKRAIEWKRTPSSSVQTIKPNETISLAVELDSRQNVNQ 592
           IL+     +S    +P + +  + R    K   +        N     A   DS     +
Sbjct: 489 ILQQLDKLVSTREKSPSKLSPSMLRGPALKSLQNVEAPKFLGNLPEKKANSPDSSYQKQE 548

Query: 593 VDQN--CHPTLSNKGKTVSTIHLESSAGRNSDAVNQNSSDLRFRLSNADSKYKDDAGLKI 652
           + +       L+   KT   +   S  G + D  +     +   L+N+  ++        
Sbjct: 549 ISRESVSREVLAQSEKTGDAVDGTSKTGSSKDQ-DMRGKGVYMPLTNSLEEHPPKK-RSF 608

Query: 653 NSSSPKDFPPKKIVPALGS-----EVGTQMKPFS--------SLGTKPGFPSITI----- 712
             S+ +DF   ++   LG+     EV  +   F          +G KP  PS  +     
Sbjct: 609 RMSAHEDF--LELDDDLGAASTPCEVAEKQNAFEVEKSHISMPIGEKPLTPSEAMPSTSY 668

Query: 713 ------KKPESGWTISPDSGSAFTFPVSGASSGMISEPPTPSIFPST---SIGGSQPLLL 754
                  +  S  ++  +      FP+       ++  PT      T   SI   +P   
Sbjct: 669 ISNGDASQGTSNGSLETERNKFVAFPIEAVQQSNMASEPTSKFIQGTEKSSISSGKP--T 698

The following BLAST results are available for this feature:

BLAST of CmaCh11G005370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAF4	3.0e-20	25.39	Nuclear pore complex protein NUP1 OS=Arabidopsis thaliana OX=3702 GN=NUP1 PE=1 S...	[more]

BLAST of CmaCh11G005370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20200.1	2.2e-82	33.80	nucleoporin-related	[more]
AT3G10650.1	2.1e-21	25.39	BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200....	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..246
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..90
None	No IPR available	PANTHER	PTHR33416	FAMILY NOT NAMED	coord: 57..779
None	No IPR available	PANTHER	PTHR33416:SF18	NUCLEOPORIN-LIKE PROTEIN	coord: 57..779

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G005370.1	CmaCh11G005370.1	mRNA