Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCCTCAAAAATTTACTCCCTCTTCCTACTTTGCATGCTTTTCCTCTCCACCGCCACACCCATTTTCGGCTGCGGCGCCTGCGGCAACCCGCCACCCAAAAAGGTCAAACCCGGCTCCGGTTCCAAGTCCCCTAAAGGAGGCCCCATTGGCCTTCCACCCATTTCCCTCCCCCCCATCGTTAAACCGCCCATCGACCTCCCTCCCGTCGTAAAACCGCCAATTTCCCTCCCCCCCATCGTCAAACCGCCTGTCGACCTCCCACCCCTCCCTCCCGTTACCCTTCCTCCAGTCACCGTCCCTCCAGTTCTCACAAAGCCATCTCCGGCGTCGAAGCCCTGCCCCCCTTCAGGGAAAGAGACCTGCCCAATTGACACTCTGAAATTGGGCGCATGTGTGGATCTTCTGGGCGGGCTGGTGCACATTGGGCTAGGAGACCCTGCAGTGAACGAATGCTGCCCGGTACTCTCAGGGCTGGCTGAGGTGGAAGCGGCGGTTTGCCTTTGCACTACCCTTAAAATTAAGGCTCTTAGCCTTAACATCTATGTTCCCATTGCCCTTCAGCTCCTTATCAGCTGTGGGAAGACCCCTCCCCCTGGCTACACTTGCTCCCTTTAG
mRNA sequence
ATGGAGTCCTCAAAAATTTACTCCCTCTTCCTACTTTGCATGCTTTTCCTCTCCACCGCCACACCCATTTTCGGCTGCGGCGCCTGCGGCAACCCGCCACCCAAAAAGGTCAAACCCGGCTCCGGTTCCAAGTCCCCTAAAGGAGGCCCCATTGGCCTTCCACCCATTTCCCTCCCCCCCATCGTTAAACCGCCCATCGACCTCCCTCCCGTCGTAAAACCGCCAATTTCCCTCCCCCCCATCGTCAAACCGCCTGTCGACCTCCCACCCCTCCCTCCCGTTACCCTTCCTCCAGTCACCGTCCCTCCAGTTCTCACAAAGCCATCTCCGGCGTCGAAGCCCTGCCCCCCTTCAGGGAAAGAGACCTGCCCAATTGACACTCTGAAATTGGGCGCATGTGTGGATCTTCTGGGCGGGCTGGTGCACATTGGGCTAGGAGACCCTGCAGTGAACGAATGCTGCCCGGTACTCTCAGGGCTGGCTGAGGTGGAAGCGGCGGTTTGCCTTTGCACTACCCTTAAAATTAAGGCTCTTAGCCTTAACATCTATGTTCCCATTGCCCTTCAGCTCCTTATCAGCTGTGGGAAGACCCCTCCCCCTGGCTACACTTGCTCCCTTTAG
Coding sequence (CDS)
ATGGAGTCCTCAAAAATTTACTCCCTCTTCCTACTTTGCATGCTTTTCCTCTCCACCGCCACACCCATTTTCGGCTGCGGCGCCTGCGGCAACCCGCCACCCAAAAAGGTCAAACCCGGCTCCGGTTCCAAGTCCCCTAAAGGAGGCCCCATTGGCCTTCCACCCATTTCCCTCCCCCCCATCGTTAAACCGCCCATCGACCTCCCTCCCGTCGTAAAACCGCCAATTTCCCTCCCCCCCATCGTCAAACCGCCTGTCGACCTCCCACCCCTCCCTCCCGTTACCCTTCCTCCAGTCACCGTCCCTCCAGTTCTCACAAAGCCATCTCCGGCGTCGAAGCCCTGCCCCCCTTCAGGGAAAGAGACCTGCCCAATTGACACTCTGAAATTGGGCGCATGTGTGGATCTTCTGGGCGGGCTGGTGCACATTGGGCTAGGAGACCCTGCAGTGAACGAATGCTGCCCGGTACTCTCAGGGCTGGCTGAGGTGGAAGCGGCGGTTTGCCTTTGCACTACCCTTAAAATTAAGGCTCTTAGCCTTAACATCTATGTTCCCATTGCCCTTCAGCTCCTTATCAGCTGTGGGAAGACCCCTCCCCCTGGCTACACTTGCTCCCTTTAG
Protein sequence
MESSKIYSLFLLCMLFLSTATPIFGCGACGNPPPKKVKPGSGSKSPKGGPIGLPPISLPPIVKPPIDLPPVVKPPISLPPIVKPPVDLPPLPPVTLPPVTVPPVLTKPSPASKPCPPSGKETCPIDTLKLGACVDLLGGLVHIGLGDPAVNECCPVLSGLAEVEAAVCLCTTLKIKALSLNIYVPIALQLLISCGKTPPPGYTCSL
Homology
BLAST of CmaCh11G005220 vs. ExPASy Swiss-Prot
Match:
Q00451 (36.4 kDa proline-rich protein OS=Solanum lycopersicum OX=4081 GN=TPRP-F1 PE=2 SV=1)
HSP 1 Score: 139.4 bits (350), Expect = 4.5e-32
Identity = 98/226 (43.36%), Postives = 121/226 (53.54%), Query Frame = 0
Query: 33 PPKKVKPGSGSKSPKGGPI-GLPPISLPPIVKPPIDLPPVV------------KPPISLP 92
PP V P S K PK P PP +PPIV PPI PP+ KPP P
Sbjct: 118 PPPIVSPPSTPKPPKTPPFTPKPPSPIPPIVSPPIVYPPITPTPPIVHPPVTPKPPSPTP 177
Query: 93 PIVKPPVDLPPL-------------------------PPVTLPP--------VTVPPVLT 152
PIV PP+ PP+ PPV +PP VT P V T
Sbjct: 178 PIVSPPIVYPPITPTPPVVSPPIIPTPPIVSPPFVPNPPVVIPPPYVPSPPVVTPPIVPT 237
Query: 153 KPSPASKPCP-------PSGKETCPIDTLKLGACVDLLGGLVHIGLGDPAVNECCPVLSG 205
P+P P P P + TCPID LKLGACVD+LGGL+HIG+G A CCP+L G
Sbjct: 238 PPTPCPPPPPPPAIIPSPPAQPTCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGG 297
BLAST of CmaCh11G005220 vs. ExPASy Swiss-Prot
Match:
Q9SU35 (pEARLI1-like lipid transfer protein 1 OS=Arabidopsis thaliana OX=3702 GN=AZI1 PE=1 SV=1)
HSP 1 Score: 89.7 bits (221), Expect = 4.1e-17
Identity = 56/133 (42.11%), Postives = 80/133 (60.15%), Query Frame = 0
Query: 80 PIVKP-PVDLPPLPPVTLPPVTVPPVLTKPSPASKPCPP-----SGKETCPIDTLKLGAC 139
P KP PV P PV PP PP + PSP +P P S +CPID LKLG C
Sbjct: 32 PSPKPKPVPSPKPKPVQCPP---PPRPSVPSPNPRPVTPPRTPGSSGNSCPIDALKLGVC 91
Query: 140 VDLLGGLVHIGLGDPAVNECCPVLSGLAEVEAAVCLCTTLKIKALSLNIYVPIALQLLIS 199
++L L++I LG P+ +CC ++ GL +V+AA+CLCT L+ L +N+ VPI+L +L++
Sbjct: 92 ANVLSSLLNIQLGQPSSQQCCSLIQGLVDVDAAICLCTALRANVLGINLNVPISLSVLLN 151
Query: 200 -CGKTPPPGYTCS 206
C + P G+ C+
Sbjct: 152 VCNRKLPSGFQCA 161
BLAST of CmaCh11G005220 vs. ExPASy Swiss-Prot
Match:
Q39176 (Lipid transfer protein EARLI 1 OS=Arabidopsis thaliana OX=3702 GN=EARLI1 PE=1 SV=1)
HSP 1 Score: 87.0 bits (214), Expect = 2.6e-16
Identity = 52/129 (40.31%), Postives = 76/129 (58.91%), Query Frame = 0
Query: 80 PIVKP-PVDLPPLPPVTLPPVTVPPVLT-KPSPASKPCPPSGKETCPIDTLKLGACVDLL 139
P KP PV P PV P V P V + P P + P P CPID L+LG C ++L
Sbjct: 40 PSPKPKPVPSPKPKPVPSPSVPSPSVPSPNPRPVTPPRTPGSSGNCPIDALRLGVCANVL 99
Query: 140 GGLVHIGLGDPAVNECCPVLSGLAEVEAAVCLCTTLKIKALSLNIYVPIALQLLIS-CGK 199
L++I LG P+ CC ++ GL +++AA+CLCT L+ L +N+ VPI+L +L++ C +
Sbjct: 100 SSLLNIQLGQPSAQPCCSLIQGLVDLDAAICLCTALRANVLGINLNVPISLSVLLNVCNR 159
Query: 200 TPPPGYTCS 206
P G+ C+
Sbjct: 160 KVPSGFQCA 168
BLAST of CmaCh11G005220 vs. ExPASy Swiss-Prot
Match:
Q9SU34 (pEARLI1-like lipid transfer protein 2 OS=Arabidopsis thaliana OX=3702 GN=At4g12490 PE=2 SV=1)
HSP 1 Score: 87.0 bits (214), Expect = 2.6e-16
Identity = 53/147 (36.05%), Postives = 84/147 (57.14%), Query Frame = 0
Query: 60 PIVKPPIDLPPVVKPPISLPPIVKPPVDLPPLPPVTLPPVTVPPVLTKPSPASKPCPPSG 119
P+ P + P V P + P + P V P +P ++P +VP P+P P P
Sbjct: 38 PLPNPKVPSPKVPTPSVPSPYVPTPSVPSPSVPTPSVPSPSVPS--PNPTPVIPPRTPGS 97
Query: 120 KETCPIDTLKLGACVDLLGGLVHIGLGDPAVNECCPVLSGLAEVEAAVCLCTTLKIKALS 179
CPID L+LG C ++L GL+++ LG P+ CC ++ GL +++AAVCLCT L+ L
Sbjct: 98 SGNCPIDALRLGVCANVLSGLLNVQLGQPSPQPCCSLIQGLVDLDAAVCLCTALRANVLG 157
Query: 180 LNIYVPIALQLLIS-CGKTPPPGYTCS 206
+N+ VPI+L +L++ C + P + C+
Sbjct: 158 INLNVPISLSVLLNVCNRRLPSNFQCA 182
BLAST of CmaCh11G005220 vs. ExPASy Swiss-Prot
Match:
Q9SU33 (pEARLI1-like lipid transfer protein 3 OS=Arabidopsis thaliana OX=3702 GN=At4g12500 PE=2 SV=1)
HSP 1 Score: 86.7 bits (213), Expect = 3.4e-16
Identity = 51/138 (36.96%), Postives = 80/138 (57.97%), Query Frame = 0
Query: 69 PPVVKPPISLPPIVKPPVDLPPLPPVTLPPVTVPPVLTKPSPASKPCPPSGKETCPIDTL 128
P V P P I P V P +P ++P +VP P+P + P P CPID L
Sbjct: 42 PKVPSPKYPSPSIPSPSVPTPSVPTPSVPTPSVPS--PNPTPVTPPRTPGSSGNCPIDAL 101
Query: 129 KLGACVDLLGGLVHIGLGDPAVNECCPVLSGLAEVEAAVCLCTTLKIKALSLNIYVPIAL 188
+LG C ++L GL+++ LG P+ CC ++ GL +++AA+CLCT L+ L +N+ VPI+L
Sbjct: 102 RLGVCANVLSGLLNVQLGQPSAQPCCSLIQGLVDLDAAICLCTALRANVLGINLNVPISL 161
Query: 189 QLLIS-CGKTPPPGYTCS 206
+L++ C + P + C+
Sbjct: 162 SVLLNVCNRRLPSDFQCA 177
BLAST of CmaCh11G005220 vs. TAIR 10
Match:
AT2G10940.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )
HSP 1 Score: 177.6 bits (449), Expect = 1.1e-44
Identity = 104/199 (52.26%), Postives = 129/199 (64.82%), Query Frame = 0
Query: 33 PPKKVKPGSGSKSPKGGPIGLPPISLPPIVKPPIDLPPVVKPPISLPPIVKPPVDLPPLP 92
P V P + K P P+ +P + +PP+ P + +PPV P + +PP+ P + LPP+
Sbjct: 94 PKLPVPPVTVPKLPV-PPVTVPKLPVPPVTVPKLPVPPVTVPKLPVPPVTVPKLPLPPIS 153
Query: 93 PVTLPPVT---------------VPPVLTKPSPASKPCPP----------SGKETCPIDT 152
+ +PPV +PP T P+ K CPP GK TCPIDT
Sbjct: 154 GLPIPPVVGPNLPLPPLPIVGPILPPGTTPPATGGKDCPPPPGSVKPPSGGGKATCPIDT 213
Query: 153 LKLGACVDLLGGLVHIGLGDPAVNECCPVLSGLAEVEAAVCLCTTLKIKALSLNIYVPIA 207
LKLGACVDLLGGLV IGLGDPAVN+CCP+L GL EVEAA CLCTTLK+KAL LN+YVP+A
Sbjct: 214 LKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLKLKALDLNLYVPVA 273
BLAST of CmaCh11G005220 vs. TAIR 10
Match:
AT2G10940.2 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )
HSP 1 Score: 177.6 bits (449), Expect = 1.1e-44
Identity = 104/199 (52.26%), Postives = 129/199 (64.82%), Query Frame = 0
Query: 33 PPKKVKPGSGSKSPKGGPIGLPPISLPPIVKPPIDLPPVVKPPISLPPIVKPPVDLPPLP 92
P V P + K P P+ +P + +PP+ P + +PPV P + +PP+ P + LPP+
Sbjct: 94 PKLPVPPVTVPKLPV-PPVTVPKLPVPPVTVPKLPVPPVTVPKLPVPPVTVPKLPLPPIS 153
Query: 93 PVTLPPVT---------------VPPVLTKPSPASKPCPP----------SGKETCPIDT 152
+ +PPV +PP T P+ K CPP GK TCPIDT
Sbjct: 154 GLPIPPVVGPNLPLPPLPIVGPILPPGTTPPATGGKDCPPPPGSVKPPSGGGKATCPIDT 213
Query: 153 LKLGACVDLLGGLVHIGLGDPAVNECCPVLSGLAEVEAAVCLCTTLKIKALSLNIYVPIA 207
LKLGACVDLLGGLV IGLGDPAVN+CCP+L GL EVEAA CLCTTLK+KAL LN+YVP+A
Sbjct: 214 LKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLKLKALDLNLYVPVA 273
BLAST of CmaCh11G005220 vs. TAIR 10
Match:
AT1G62500.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )
HSP 1 Score: 162.5 bits (410), Expect = 3.5e-40
Identity = 100/201 (49.75%), Postives = 127/201 (63.18%), Query Frame = 0
Query: 32 PPPKKVKPGSGSKSP---------KGGPIGLPPISLPPIVKPPIDLPPVVKPPISLPPIV 91
PPP V+P + P + PI PPI +PPI PP+ PP + PPI+ PP +
Sbjct: 94 PPPVVVRPPPIIRPPPVVYPPPIVRPPPITRPPIIIPPIQPPPVTTPPGLLPPITTPPGL 153
Query: 92 KPPVDLPP--LPPVTLPPVTVPPVLTKPSPASKPCPPSG-----------------KETC 151
PPV PP LPPVT PP +PP++ P P + P P SG + TC
Sbjct: 154 LPPVTTPPGLLPPVTTPPGLLPPII-NPPPVTVPPPSSGYPPYGPPSGGGGGGGGKQPTC 213
Query: 152 PIDTLKLGACVDLLGGLVHIGLGDPAVNECCPVLSGLAEVEAAVCLCTTLKIKALSLNIY 205
PI+ LKLGACVD+LGGL+HIGLG+P N CCPVL GL E+EAAVCLCTT+++K L+LNI+
Sbjct: 214 PINALKLGACVDVLGGLIHIGLGNPVENVCCPVLQGLLELEAAVCLCTTIRLKLLNLNIF 273
BLAST of CmaCh11G005220 vs. TAIR 10
Match:
AT3G22142.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )
HSP 1 Score: 162.2 bits (409), Expect = 4.6e-40
Identity = 89/177 (50.28%), Postives = 122/177 (68.93%), Query Frame = 0
Query: 38 KPGSGSKSPKGGPIGLPPISLPPIVKPPIDLPPVVKPPISLPPIVKPPVDLPPL------ 97
KP + P P+ PP++ PP V PP+ PP+ KPP + PP+ PPV PP+
Sbjct: 1303 KPPVATPPPATPPVAKPPVATPPTVTPPVATPPIAKPPGARPPVATPPVATPPIAKSPVA 1362
Query: 98 -PPVTLPPVTVPPVLTKP---SPASKPCPPSGKETCPIDTLKLGACVDLLGGLVHIGLGD 157
PP+T PPV P+ T P +P + P P + +TCPIDTLKLG+CVDLLGGLVHIG+G
Sbjct: 1363 TPPMTKPPVASSPIATPPIAKTPIATP-PTTMPKTCPIDTLKLGSCVDLLGGLVHIGIGK 1422
Query: 158 PAVNECCPVLSGLAEVEAAVCLCTTLKIKALSLNIYVPIALQLLISCGKTPPPGYTC 205
A +CCPV+ GL +++AAVCLCTT+K K L++++ +PIAL++L++CGK PPPG+ C
Sbjct: 1423 SAKEKCCPVVEGLVDLDAAVCLCTTIKAKLLNIDVILPIALEVLLNCGKNPPPGFKC 1478
BLAST of CmaCh11G005220 vs. TAIR 10
Match:
AT3G22120.1 (cell wall-plasma membrane linker protein )
HSP 1 Score: 161.8 bits (408), Expect = 6.0e-40
Identity = 93/181 (51.38%), Postives = 119/181 (65.75%), Query Frame = 0
Query: 32 PPPKKVKPGSGSKSPKGGPIGLPPISLPPIVKPPIDLPPVVKPPISLPPIVKPPVDLPPL 91
PPP P + + +P P+ PP PP++ PP PPVV PP PP++ PP PP+
Sbjct: 158 PPPTPCPPPTPTPTP---PVVTPPTPTPPVITPPTPTPPVVTPPTPTPPVITPPTPTPPV 217
Query: 92 -------PPVTLPPVTVPPVLTKPSPASKPCPPSGKETCPIDTLKLGACVDLLGGLVHIG 151
PPV PP PPV+T P+P P ETCPIDTLKLGACVD+LGGL+HIG
Sbjct: 218 ITPPTPTPPVVTPPTPTPPVVTPPTPTP---PTPIPETCPIDTLKLGACVDVLGGLIHIG 277
Query: 152 LG-DPAVNECCPVLSGLAEVEAAVCLCTTLKIKALSLNIYVPIALQLLISCGKTPPPGYT 205
LG A ECCPVL GL +++AAVCLCTT+K+K L++++ +PIAL+LL+ CGKTPP +
Sbjct: 278 LGKSHAKAECCPVLGGLLDLDAAVCLCTTIKLKLLNIDLVLPIALELLLDCGKTPPSDFK 332
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q00451 | 4.5e-32 | 43.36 | 36.4 kDa proline-rich protein OS=Solanum lycopersicum OX=4081 GN=TPRP-F1 PE=2 SV... | [more] |
Q9SU35 | 4.1e-17 | 42.11 | pEARLI1-like lipid transfer protein 1 OS=Arabidopsis thaliana OX=3702 GN=AZI1 PE... | [more] |
Q39176 | 2.6e-16 | 40.31 | Lipid transfer protein EARLI 1 OS=Arabidopsis thaliana OX=3702 GN=EARLI1 PE=1 SV... | [more] |
Q9SU34 | 2.6e-16 | 36.05 | pEARLI1-like lipid transfer protein 2 OS=Arabidopsis thaliana OX=3702 GN=At4g124... | [more] |
Q9SU33 | 3.4e-16 | 36.96 | pEARLI1-like lipid transfer protein 3 OS=Arabidopsis thaliana OX=3702 GN=At4g125... | [more] |
Match Name | E-value | Identity | Description | |
AT2G10940.1 | 1.1e-44 | 52.26 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... | [more] |
AT2G10940.2 | 1.1e-44 | 52.26 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... | [more] |
AT1G62500.1 | 3.5e-40 | 49.75 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... | [more] |
AT3G22142.1 | 4.6e-40 | 50.28 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... | [more] |
AT3G22120.1 | 6.0e-40 | 51.38 | cell wall-plasma membrane linker protein | [more] |