CmaCh11G005120 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G005120
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RING-type domain-containing protein
Location	Cma_Chr11: 2425382 .. 2427979 (+)
RNA-Seq Expression	CmaCh11G005120
Synteny	CmaCh11G005120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGAAAAGCAAGAACTCGAAATCGAAAAACACACAACAAATTCCTGTGATTTCGTTGAATCGAAAATCGGCAGCAGGGTTTGTGTTTTAAGCCCCGAAAGGGCCCAAATCAAAAGCGTTTATTAAATTCAATTCAATTTCCCATGCTCATCACCACGGATCATCGCCTAAATTTAACCTCCTAATTTAATCTCACTCTCTTCGCTTTATTAACGATCTTAATCACCATGGGAAAGCGCAAGCGAGACACTGATCAGACCCTCCCCGATCGTCCTTTTCATTTTTCTGGTATGCCCTTCTTTTCCTTTGTAACCCATCATGCTCTGTTTCTGTTTGTTGAAATGTCTGTAAGAGATTATTCCTTTGCGTCGATACAGAGTTTTGGTTAAATCACCTTTGTTTGAGCGGCATGGGTTTTGTAAGTAATTGGCATTTTTAGAATTTCAATCCGATCTATGAGAGTTTTCCACAAGAATATATTGGGGATTGTTTTGGCCTTTAAGGATGTAGTTTGTTGACCAATCTCAGTCAATTGGCTACTTCAATACCTTTTAGAATTAGTTTTGGTTGAATGTTTTGGTAGAACTGATGTATTCTTCTGATTTTCCTATGTTTTGAATGATAAAATGGAACATGATCATACGTATGTTGCAGGGCCAGTGACTTTTTCAAATCAAATGGATGTGCGGTCGGAAGAGGTTTGTACTCTTTTGTTTGCTTCAGACATTCTATTTTAAAAATGAGAAACTGTTCATACTTTGTTATTAAACTTGCTTTCTTCCTTGACTTATCTAGTTCAAGTTTGAGTGAGTAGGCAAAATAGTAGTTCAAACCTTTCCCTTACTATAGAAACATTTAGATCCCTCCTTTTAGTTGATGGCAATCTATTAAAGCTATGTTGCATTGAACAAGCAGGATCAGACTCTTGCCCGCCCGGTATTCATGAAACGTTTATGTCATCAGTATAGCCACCAATATTATCGGCGAGGTTCAATCAGTCAAGCAAATGCATCCACCTCCTGTGAAAACCGAGTGAGAACCATACTTGAAGAGCGACCCGCTTTTAAGTTTGCTGCTCATCGCAACTCGGAGTTTCCAGACCATATAGGTATATGTTCTGAAGTTCCTAAACATGGTCATGCACATTTTTCAGTCGGGAATGAGAGGACTTTTTGCGATGACATGTTCACTTGTAATGCTATTAAATGTTATAGGATGTTTGAAAATTCATTCCCTACTTCTAATCAAATGAAATGTAACGGCCCAAAGGGGTGGATTGTGAGATCCCACGTCGGTTGGAGAGGAGAATGAAACATTCCTTATAAGGGTGTGGAAACCTCTACTTAGTAAATGTGTTTTAAAACCATGAGACTGATGCGATATGTAACAAGCTAAAGCAGCGGTTGGAGAGGAGAATGAAACATTCCTTATAAGGGTGTGGAAACCTCTACTTAGTAAATGTGTTTTAAAACCATGAGGCTGATGCGATATGTAACAAGCTAAAGCAGACATATCTGCTAGAGGTGGACCTTAAAACATAGATTATGCTAGAAAGGTGGTTTGTATGCCATATCTCAAATAAATTAAATTCCAACATTTCGTCTGGTTGGATGACACGGCACCTTGCTTTAAATTAGAGTTCATGTTCTTTGTGACATGAACATATTGATTATGAAACACTTTACAAAGGAAAAAGTAAACTTCAGTACTTGGAATTCTGGATAAAGAACAGTCAATTGTGTTGCATGAAACACTTACAAAGGGAAATGTCCTAAAAATATATCATAGACCTCGAAACCAAGCTGGAATTTCTATGTCGATAAATTCTAAAGATCATCTAGAATTGCTTCTTCTACATTGATGATGATGATGTTGTTCTGTATTAACTCAAACTTTTTGCATTGATTTTAGATGGCATTGAGCGCTCATTTTGGGGGCCAGAAAGGATAAGGTACAATTCCTTAGGGAAGGATGCAATATCATCTAATGGAATGAGGATGCTATGTGGGATTTGCCATAAGCTGATGAGACGAAAGCTTTGCTCTCTCGGCAACACACTTTCTTCTCGCGAACTTCCCGTTGCTGCAGTTTTGGTTTGTGGCCATGTCTATCATGCAGACTGTCTGGAGAACCGGCCAAACGTCGAAGATAGGAGCGATCCGCCTTGTCCATTGTGCACGGAACCGCCTATTGACGATTCAAAAGGAGAACAGGAATGAGTTGAGCTGTACATATGATATCACATCACACCAACAATAGGGGAATTAAGCTTGGCATTGAATAGGTGGAGTTTTTTGCATCCTCAACTATTTTTCTATGAACCAATCTATATCTATCACTGTCTTTTTGGATGGCTGTGACTTGAAAAGGAAAATGGTAGCTTTAAATCACAACGTTACCGAAAATAGTGATATCGATTCGAGGATTTGTGCTCCGTGGATTGGTTTTTGCGTAGAAGTAGAGTGAAGTTTTGTTAAGTAGCAGCAGAGGAATTTAGGTGGAGACATTTATGTACTTCTTTAGGGCAATGTATATTTTAAAGAATAAAGATATCATGACCGTAGAGATTTCCCCTTTTCCTTTTAGAAGAGATG

mRNA sequence

ATGAAAGGAAAAGCAAGAACTCGAAATCGAAAAACACACAACAAATTCCTGTGATTTCGTTGAATCGAAAATCGGCAGCAGGGTTTGTGTTTTAAGCCCCGAAAGGGCCCAAATCAAAAGCGTTTATTAAATTCAATTCAATTTCCCATGCTCATCACCACGGATCATCGCCTAAATTTAACCTCCTAATTTAATCTCACTCTCTTCGCTTTATTAACGATCTTAATCACCATGGGAAAGCGCAAGCGAGACACTGATCAGACCCTCCCCGATCGTCCTTTTCATTTTTCTGGGCCAGTGACTTTTTCAAATCAAATGGATGTGCGGTCGGAAGAGGATCAGACTCTTGCCCGCCCGGTATTCATGAAACGTTTATGTCATCAGTATAGCCACCAATATTATCGGCGAGGTTCAATCAGTCAAGCAAATGCATCCACCTCCTGTGAAAACCGAGTGAGAACCATACTTGAAGAGCGACCCGCTTTTAAGTTTGCTGCTCATCGCAACTCGGAGTTTCCAGACCATATAGATGGCATTGAGCGCTCATTTTGGGGGCCAGAAAGGATAAGGTACAATTCCTTAGGGAAGGATGCAATATCATCTAATGGAATGAGGATGCTATGTGGGATTTGCCATAAGCTGATGAGACGAAAGCTTTGCTCTCTCGGCAACACACTTTCTTCTCGCGAACTTCCCGTTGCTGCAGTTTTGGTTTGTGGCCATGTCTATCATGCAGACTGTCTGGAGAACCGGCCAAACGTCGAAGATAGGAGCGATCCGCCTTGTCCATTGTGCACGGAACCGCCTATTGACGATTCAAAAGGAGAACAGGAATGAGTTGAGCTGTACATATGATATCACATCACACCAACAATAGGGGAATTAAGCTTGGCATTGAATAGGTGGAGTTTTTTGCATCCTCAACTATTTTTCTATGAACCAATCTATATCTATCACTGTCTTTTTGGATGGCTGTGACTTGAAAAGGAAAATGGTAGCTTTAAATCACAACGTTACCGAAAATAGTGATATCGATTCGAGGATTTGTGCTCCGTGGATTGGTTTTTGCGTAGAAGTAGAGTGAAGTTTTGTTAAGTAGCAGCAGAGGAATTTAGGTGGAGACATTTATGTACTTCTTTAGGGCAATGTATATTTTAAAGAATAAAGATATCATGACCGTAGAGATTTCCCCTTTTCCTTTTAGAAGAGATG

Coding sequence (CDS)

ATGGGAAAGCGCAAGCGAGACACTGATCAGACCCTCCCCGATCGTCCTTTTCATTTTTCTGGGCCAGTGACTTTTTCAAATCAAATGGATGTGCGGTCGGAAGAGGATCAGACTCTTGCCCGCCCGGTATTCATGAAACGTTTATGTCATCAGTATAGCCACCAATATTATCGGCGAGGTTCAATCAGTCAAGCAAATGCATCCACCTCCTGTGAAAACCGAGTGAGAACCATACTTGAAGAGCGACCCGCTTTTAAGTTTGCTGCTCATCGCAACTCGGAGTTTCCAGACCATATAGATGGCATTGAGCGCTCATTTTGGGGGCCAGAAAGGATAAGGTACAATTCCTTAGGGAAGGATGCAATATCATCTAATGGAATGAGGATGCTATGTGGGATTTGCCATAAGCTGATGAGACGAAAGCTTTGCTCTCTCGGCAACACACTTTCTTCTCGCGAACTTCCCGTTGCTGCAGTTTTGGTTTGTGGCCATGTCTATCATGCAGACTGTCTGGAGAACCGGCCAAACGTCGAAGATAGGAGCGATCCGCCTTGTCCATTGTGCACGGAACCGCCTATTGACGATTCAAAAGGAGAACAGGAATGA

Protein sequence

MGKRKRDTDQTLPDRPFHFSGPVTFSNQMDVRSEEDQTLARPVFMKRLCHQYSHQYYRRGSISQANASTSCENRVRTILEERPAFKFAAHRNSEFPDHIDGIERSFWGPERIRYNSLGKDAISSNGMRMLCGICHKLMRRKLCSLGNTLSSRELPVAAVLVCGHVYHADCLENRPNVEDRSDPPCPLCTEPPIDDSKGEQE

Homology

[Close]

BLAST of CmaCh11G005120 vs. TAIR 10
Match: AT1G75400.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-11
Identity = 28/62 (45.16%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 128 RMLCGICHKLMRRKLCSLGNTLSSRELPVAAVLVCGHVYHADCLENRPNVEDRSDPPCPL 187
           + +CG C KL+  +     +++++ ELP+AAVL CGHVYHA+CLE      ++ DP CP+
Sbjct: 278 QQVCGACSKLLTER-----SSIATFELPIAAVLACGHVYHAECLETMTTDIEKYDPACPI 334

Query: 188 CT 190
           CT
Sbjct: 338 CT 334

[Close]

BLAST of CmaCh11G005120 vs. TAIR 10
Match: AT1G19680.1 (RING/U-box superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 2.6e-11
Identity = 32/86 (37.21%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 108 GPERIRYNSLGKDAISSNGMRMLCGICHKLMRRKLCSLGNTLSSRELPVAAVLVCGHVYH 167
           G  R+   S  + + S +  +  CG C KL+  +     + ++  +LP+ AVL CGHVYH
Sbjct: 250 GRRRLSGCSSSRFSCSPSVDQQTCGRCSKLLTER-----SPVARFDLPIPAVLACGHVYH 309

Query: 168 ADCLENRPNVEDRSDPPCPLCTEPPI 194
           A CLE   N  ++ DP CP+CTE  +
Sbjct: 310 AACLETMTNETEKYDPTCPICTETQV 330

[Close]

BLAST of CmaCh11G005120 vs. TAIR 10
Match: AT2G21500.2 (RING/U-box superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-10
Identity = 33/79 (41.77%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 117 LGKDAISSNGMR-----MLCGICHK-LMRRKLCSLGNTLSSRELPVAAVLVCGHVYHADC 176
           L +D I + G R       CG C + L  + L S     ++ EL VAA+L CGHVYH++C
Sbjct: 232 LRRDKIDNLGSRKSNDQQNCGACSRSLSEKSLLSSQKIFATNELSVAAILACGHVYHSEC 291

Query: 177 LENRPNVEDRSDPPCPLCT 190
           LE      D+ DP CP+CT
Sbjct: 292 LEQMTPEIDKFDPSCPICT 310

[Close]

BLAST of CmaCh11G005120 vs. TAIR 10
Match: AT2G21500.1 (RING/U-box superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-10
Identity = 33/79 (41.77%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 117 LGKDAISSNGMR-----MLCGICHK-LMRRKLCSLGNTLSSRELPVAAVLVCGHVYHADC 176
           L +D I + G R       CG C + L  + L S     ++ EL VAA+L CGHVYH++C
Sbjct: 232 LRRDKIDNLGSRKSNDQQNCGACSRSLSEKSLLSSQKIFATNELSVAAILACGHVYHSEC 291

Query: 177 LENRPNVEDRSDPPCPLCT 190
           LE      D+ DP CP+CT
Sbjct: 292 LEQMTPEIDKFDPSCPICT 310

[Close]

BLAST of CmaCh11G005120 vs. TAIR 10
Match: AT4G39140.1 (RING/U-box superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-10
Identity = 33/80 (41.25%), Postives = 43/80 (53.75%), Query Frame = 0


Query: 117 LGKDAISSNGMRM------LCGICHK-LMRRKLCSLGNTLSSRELPVAAVLVCGHVYHAD 176
           L +D I  +G RM       CG C + L  + L S      + EL V+A+L CGHVYH +
Sbjct: 240 LQRDKIDHHGNRMSKHQQHTCGACSRPLSEKSLWSSQKIFMTNELSVSAILACGHVYHGE 299

Query: 177 CLENRPNVEDRSDPPCPLCT 190
           CLE      D+ DP CP+CT
Sbjct: 300 CLEQMTPEIDKFDPSCPICT 319

The following BLAST results are available for this feature:

BLAST of CmaCh11G005120 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh11G005120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75400.1	1.5e-11	45.16	RING/U-box superfamily protein	[more]
AT1G19680.1	2.6e-11	37.21	RING/U-box superfamily protein	[more]
AT2G21500.2	1.3e-10	41.77	RING/U-box superfamily protein	[more]
AT2G21500.1	1.3e-10	41.77	RING/U-box superfamily protein	[more]
AT4G39140.1	1.3e-10	41.25	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 131..188 e-value: 2.2E-4 score: 30.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 131..189 score: 10.232069
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 114..201 e-value: 6.9E-7 score: 30.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..201
None	No IPR available	PANTHER	PTHR31150:SF6	CHROMATIN REGULATOR PHD FAMILY-RELATED	coord: 36..193
None	No IPR available	PANTHER	PTHR31150	EXPRESSED PROTEIN	coord: 36..193
None	No IPR available	CDD	cd16448	RING-H2	coord: 131..188 e-value: 3.29846E-4 score: 35.1203
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 130..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G005120.1	CmaCh11G005120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding