CmaCh11G005100 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G005100
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
LocationCma_Chr11: 2412692 .. 2413337 (+)
RNA-Seq ExpressionCmaCh11G005100
SyntenyCmaCh11G005100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGACTCCCCTCTTGTTCTTGGTCTCAAAGAACACTCCGATGGCTCAGCCTTCACCATTGTGTTACTTGACAAAGAAGTGGAAGGCCTCGAAATGAAGGACAACCAGTGGTACAGACTCCCTGTTTCTACCATCGCTGATTCGCTTCTCATCAACGTTGGGGAACAAGGGGAGGTAAGTTTCAAGTGCAAGTTTTAAGGTTGTCCTTGTATTCAAGTGTGTGCCTCTATGTTATTGTATATCTGTGCAGATTATGAGCAATGGGATATTTTAGAGCCCTGTTCATCGGGCGGTAACAAATTCAGAGAGGCAGAGGCTTTCAGTGGCTTGTTTCTGCTGCCCAGAAAAAGATGAGGAGGACGAGAGGAGGCCGAGATTGTTCAGAACTGTGAAGAACTATGTGGAAGAAACTTATTTTCAGTATTACCAGAAGGGGCAGAGAGCAGTTGATGGATTGAAGATTAAAAAAACATCAACACAAGTCTCTGTTTTTTGTAATGCTTTCACTGAATGTTTCAATAATAGCCTGTTCTAAATCAACACTCCCAGATGAATGTAAAAGAGAATTAAATCAGATATTATTCAAAATGGAAGTCGCATTCAAGAACAGAGAGACAGTGTGTGGGAACAACAATAATAGCCT

mRNA sequence

ATGCTCGACTCCCCTCTTGTTCTTGGTCTCAAAGAACACTCCGATGGCTCAGCCTTCACCATTGTGTTACTTGACAAAGAAGTGGAAGGCCTCGAAATGAAGGACAACCAGTGGTACAGACTCCCTGTTTCTACCATCGCTGATTCGCTTCTCATCAACGTTGGGGAACAAGGGGAGATTATGAGCAATGGGATATTTTAGAGCCCTGTTCATCGGGCGGTAACAAATTCAGAGAGGCAGAGGCTTTCAGTGGCTTGTTTCTGCTGCCCAGAAAAAGATGAGGAGGACGAGAGGAGGCCGAGATTGTTCAGAACTGTGAAGAACTATGTGGAAGAAACTTATTTTCAGTATTACCAGAAGGGGCAGAGAGCAGTTGATGGATTGAAGATTAAAAAAACATCAACACAAGTCTCTGTTTTTTGTAATGCTTTCACTGAATGTTTCAATAATAGCCTGTTCTAAATCAACACTCCCAGATGAATGTAAAAGAGAATTAAATCAGATATTATTCAAAATGGAAGTCGCATTCAAGAACAGAGAGACAGTGTGTGGGAACAACAATAATAGCCT

Coding sequence (CDS)

ATGCTCGACTCCCCTCTTGTTCTTGGTCTCAAAGAACACTCCGATGGCTCAGCCTTCACCATTGTGTTACTTGACAAAGAAGTGGAAGGCCTCGAAATGAAGGACAACCAGTGGTACAGACTCCCTGTTTCTACCATCGCTGATTCGCTTCTCATCAACGTTGGGGAACAAGGGGAGATTATGAGCAATGGGATATTTTAG

Protein sequence

MLDSPLVLGLKEHSDGSAFTIVLLDKEVEGLEMKDNQWYRLPVSTIADSLLINVGEQGEIMSNGIF
Homology
BLAST of CmaCh11G005100 vs. ExPASy Swiss-Prot
Match: D4N502 (Codeine O-demethylase OS=Papaver somniferum OX=3469 GN=CODM PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-07
Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 0

Query: 6   LVLGLKEHSDGSAFTIVLLDKEVEGLEM-KDNQWYRLPVSTIADSLLINVGEQGEIMSNG 65
           LVLGL  HSD S  TI+L   EVEGL++ K+ +W  + +  + D+ ++NVG+  EIM+NG
Sbjct: 228 LVLGLTSHSDFSGLTILLQLNEVEGLQIRKEERW--ISIKPLPDAFIVNVGDILEIMTNG 287

Query: 66  IF 67
           I+
Sbjct: 288 IY 287

BLAST of CmaCh11G005100 vs. ExPASy Swiss-Prot
Match: O80449 (Jasmonate-induced oxygenase 4 OS=Arabidopsis thaliana OX=3702 GN=JOX4 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.9e-07
Identity = 23/61 (37.70%), Postives = 43/61 (70.49%), Query Frame = 0

Query: 6   LVLGLKEHSDGSAFTIVLLDKEVEGLEMKDNQWYRLPVSTIADSLLINVGEQGEIMSNGI 65
           L LGL  HSD    TI+L D++V GL+++    + + + ++ ++L++N+G+Q +I+SNGI
Sbjct: 219 LTLGLSSHSDPGGITILLPDEKVAGLQVRRGDGW-VTIKSVPNALIVNIGDQLQILSNGI 278

Query: 66  F 67
           +
Sbjct: 279 Y 278

BLAST of CmaCh11G005100 vs. ExPASy Swiss-Prot
Match: Q9FR99 (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata OX=4641 GN=MAO1B PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-06
Identity = 25/60 (41.67%), Postives = 40/60 (66.67%), Query Frame = 0

Query: 6   LVLGLKEHSDGSAFTIVLLDKEVEGLEM-KDNQWYRLPVSTIADSLLINVGEQGEIMSNG 65
           LV GL+ H+D     ++  D +V GL+M KD +W  + V  +AD+++IN G+Q E++SNG
Sbjct: 170 LVKGLRAHTDAGGVILLFQDDQVGGLQMLKDGRW--IDVQPLADAIVINTGDQIEVLSNG 227

BLAST of CmaCh11G005100 vs. ExPASy Swiss-Prot
Match: A2A1A0 (S-norcoclaurine synthase 1 OS=Coptis japonica OX=3442 GN=NCS1 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-06
Identity = 25/60 (41.67%), Postives = 39/60 (65.00%), Query Frame = 0

Query: 8   LGLKEHSDGSAFTIVLLDKEVEGLEM-KDNQWYRLPVSTIADSLLINVGEQGEIMSNGIF 67
           LGL  HSD +  T+++   EV GL + KD +W  +P+  I  + ++N+G+  EIMSNGI+
Sbjct: 223 LGLSPHSDATGLTLLIQVNEVNGLHIKKDEKW--VPIKPILGAFVVNIGDVIEIMSNGIY 280

BLAST of CmaCh11G005100 vs. ExPASy Swiss-Prot
Match: D4N500 (Thebaine 6-O-demethylase OS=Papaver somniferum OX=3469 GN=T6ODM PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 8.8e-06
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 0

Query: 6   LVLGLKEHSDGSAFTIVLLDKEVEGLEMK-DNQWYRLPVSTIADSLLINVGEQGEIMSNG 65
           L +GL  HSD    TI+L   EVEGL++K +  W  + V  + ++ ++NVG+  EIM+NG
Sbjct: 231 LAIGLTSHSDFGGLTILLQINEVEGLQIKREGTW--ISVKPLPNAFVVNVGDILEIMTNG 290

Query: 66  IF 67
           I+
Sbjct: 291 IY 290

BLAST of CmaCh11G005100 vs. TAIR 10
Match: AT5G54000.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 3.1e-14
Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 0

Query: 7   VLGLKEHSDGSAFTIVLLDKEVEGLE-MKDNQWYRLPVSTIADSLLINVGEQGEIMSNGI 66
           VLGLK HSDGSAFT++L DK VEGL+ +KD +WY+   S +  ++LINVG+  E+MSNGI
Sbjct: 220 VLGLKPHSDGSAFTLILPDKNVEGLQFLKDGKWYK--ASILPHTILINVGDTMEVMSNGI 278

BLAST of CmaCh11G005100 vs. TAIR 10
Match: AT5G20550.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 3.1e-14
Identity = 35/61 (57.38%), Postives = 50/61 (81.97%), Query Frame = 0

Query: 7   VLGLKEHSDGSAFTIVLLDKEVEGLE-MKDNQWYRLPVSTIADSLLINVGEQGEIMSNGI 66
           V+G++ H+D SAFT++L DK VEGL+ +KD +WY+ PV   +D++LINVG+Q EIMSNGI
Sbjct: 219 VIGVRPHADKSAFTLLLPDKNVEGLQFLKDGKWYKAPV-VASDTILINVGDQMEIMSNGI 278

BLAST of CmaCh11G005100 vs. TAIR 10
Match: AT1G49390.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein )

HSP 1 Score: 73.9 bits (180), Expect = 5.3e-14
Identity = 33/61 (54.10%), Postives = 50/61 (81.97%), Query Frame = 0

Query: 7   VLGLKEHSDGSAFTIVLLDKEVEGLE-MKDNQWYRLPVSTIADSLLINVGEQGEIMSNGI 66
           V+G+K H+DGSA T++L DK+VEGL+ +KD +WY+ P+  + D++LI +G+Q EIMSNGI
Sbjct: 219 VIGIKPHADGSAITLLLPDKDVEGLQFLKDGKWYKAPI--VPDTILITLGDQMEIMSNGI 277

BLAST of CmaCh11G005100 vs. TAIR 10
Match: AT5G20400.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 6.9e-14
Identity = 34/61 (55.74%), Postives = 49/61 (80.33%), Query Frame = 0

Query: 7   VLGLKEHSDGSAFTIVLLDKEVEGLE-MKDNQWYRLPVSTIADSLLINVGEQGEIMSNGI 66
           V+G+K H+DGSA T++L DK+V GL+  KD +WY+ P+  + D++LINVG+Q EIMSNGI
Sbjct: 219 VIGVKPHADGSAITLLLPDKDVGGLQFQKDGKWYKAPI--VPDTILINVGDQMEIMSNGI 277

BLAST of CmaCh11G005100 vs. TAIR 10
Match: AT3G21420.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 3.3e-08
Identity = 29/61 (47.54%), Postives = 42/61 (68.85%), Query Frame = 0

Query: 6   LVLGLKEHSDGSAFTIVLLDK-EVEGLE-MKDNQWYRLPVSTIADSLLINVGEQGEIMSN 65
           LVLGL  HSDGSA T++   K    GL+ +KDN W  +PV  + ++L+IN+G+  E++SN
Sbjct: 228 LVLGLSPHSDGSALTVLQQSKNSCVGLQILKDNTW--VPVKPLPNALVINIGDTIEVLSN 286

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
D4N5021.2e-0746.77Codeine O-demethylase OS=Papaver somniferum OX=3469 GN=CODM PE=1 SV=1[more]
O804497.9e-0737.70Jasmonate-induced oxygenase 4 OS=Arabidopsis thaliana OX=3702 GN=JOX4 PE=1 SV=1[more]
Q9FR991.8e-0641.671-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata OX=4641 GN=MAO1B PE=... [more]
A2A1A01.8e-0641.67S-norcoclaurine synthase 1 OS=Coptis japonica OX=3442 GN=NCS1 PE=1 SV=1[more]
D4N5008.8e-0641.94Thebaine 6-O-demethylase OS=Papaver somniferum OX=3469 GN=T6ODM PE=1 SV=1[more]
Match NameE-valueIdentityDescription
AT5G54000.13.1e-1459.022-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [more]
AT5G20550.13.1e-1457.382-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [more]
AT1G49390.15.3e-1454.102-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [more]
AT5G20400.16.9e-1455.742-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [more]
AT3G21420.13.3e-0847.542-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044861Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domainPFAMPF031712OG-FeII_Oxycoord: 6..64
e-value: 5.6E-8
score: 33.2
IPR027443Isopenicillin N synthase-like superfamilyGENE3D2.60.120.330coord: 2..66
e-value: 9.9E-12
score: 46.9
NoneNo IPR availablePANTHERPTHR47991:SF632-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEINcoord: 6..66
NoneNo IPR availablePANTHERPTHR47991OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASEcoord: 6..66
NoneNo IPR availableSUPERFAMILY51197Clavaminate synthase-likecoord: 4..66

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G005100.1CmaCh11G005100.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016491 oxidoreductase activity