CmaCh11G004730 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G004730
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	BHLH domain-containing protein
Location	Cma_Chr11: 2294679 .. 2297632 (-)
RNA-Seq Expression	CmaCh11G004730
Synteny	CmaCh11G004730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTAATAATCAAACCCTCAACTCTCAACAAAGAACACCAAATTCAATTCCCTCCGCCGTCTTCTTCCTCTTCCTCCGCCACTCCGCCGGCGACGATGCAGCCCTGTAGCAGAGAAATGCAAAGCCTCAACTCTCTTTTAAACAACTCTCAAATCTCCCTTCAGGATCTCCACGGCGACGAACACCATCTGAATCCGCCGTCGGAGCAGATTCCGGGGTCTCAGCTCCACCATTTCGATCCGGTAGCCGCCGCCTCTCACGATGACTTCCTCGAGCAAATGCTCCATACAATCCCATCCTGTTCGTGGCCGGACCTCAACCCTTCAAACCCTAAATCCCCGTGGGACATTAACCCCATCAATAAGCCATCCAGAGATATCTCCGACACCTCTCCCGCTGCCAAGGCTGTCGTCATGCTCCAGCAACAGCTTCTATTGTCCAGAGGCATATCCTCTGTCGCCGATCATGGCCTCCCCCCTATGCCTCTCTCCCTTAGTAATGCCGATTTGGACCGCTCCCACAACGATATCGTCGACAGATCCTGCTTCCGGCCACCAAACTCGGTTAGTTCTGTGCTGGATCTTTCAATTCCTCGCCGGCGTTATTCATGCTTCAACACTCTGTTTTTCAGGGAGGTGGTATTCAATCGCATAGTTTCGGAGCTCAAGGAAATATGATGAATCAAGCTCCGGACGGTGGGTCCGGCGGGATTTCTCCATCTCAGCCGAAACAGAAAGTCAGAGCTCGCAGGGGCCAAGCCACTGACCCCCACAGTATCGCGGAAAGGGTAAACTAAAATTTCCCCATAATTATTCAAATCTTTAACTCTGTTTGACTAAACCCACTAAGTCATCTTCATGCTCAGTAGTTTCCGGCTGAAAAAAATGGATCGCCATTTTTCTTTGTTGTGTTCTTGTTTGTTTTGGGTTGACCCCGAATGTACGTTTGAACAGAAACATTTGGTTAATTGAATTTTTGTCTGGTTCGTGTTAGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCCCTGCAAGAACTCGTTCCCAACGCAAACAAGGTCATTTCCTTCCTCCTCCTCCTCCTCCATCTTTTTTTTCTTTTTAATTTCCCTAATTAATTTATCCCGAAATTTAAGAACTCTTTACTGAGCTCAAATCGAGCCCTGCAAAACCGTAATTTAGCAAACTGATCAGGGGCATTATGGTCATTAGCGCACACAACGCGTTGACGGTGAGAAATTTATGTATTGGAAAATGAGGGACACGTGTCATCAGCGTAATGTGGCAGTTACTAACAAAATGACGAGCATGTAATTATTAGCAAAACCTTTTTTTTGTTAATAAATTTTTATGTTTGTTTCTGCTTTCGGAGAAAAAGAGGGAGGATTAAATAGCAAAAGCAAAGTTAATTAATGGGGAAATTGAAATTAATTAATTAATTAATTAATGATAATGAATCTGATTAGTTGGAGTTTGGAATTCCAGACAGATAAGGCTTCAATGCTGGATGAGATCATCGACTACGTTAAATTCCTGCAGCTCCAAGTCAAGGTTTGGCCCTGTTACCTTTAAATATAAATATATATATATATATATTTATATATATGCATAGTTTATTCTAATTATTAAATGTAATTAGTTAATATATGTATATATTGAAAAAGATTCCCTGTGCGGTATTTAATTTAATATTAAATGTAATTAATTTCTCTTATTATTCGGTGTAGGTTCTGAGCATGAGCCGGTTAGGGGGTGCAGCTGCGGTTGCTCCTCTCGTTGCTGACGTGTCCGATGAGGTCAGCTCTCTCAAAGTCAAAATTACCTCTTTTCTTTTTTCTTTTTTTTTCTTTTTTTTTTTTTTTTTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGACGTGCATAATTATGATTTATGGGTTTAATTAAAAAGGATTGGAAATTAACAAATTGTAAAATTATTTCAAACTATTTAAAAATAAAATTTAAACGGCACAAATTTACTTTTAGCAGAAGACGACAAAAGGAAAAAAGGGCCGCATGCATGCGGAAACTTTTATCAGCTTTCTTTCTTTCTGGTTTGCCTGTCGTTTTCGTTTATATGTACTAATTGATGAAACGGTGTCGCTTCAGGGTGGTGGTGAGTGTATGCAAGGTGGGCGGAGTTCAAACGGCAGCGGAGGAAACCAAACGGCGTCATCAAACGACAGTGTGACAGTGACGGAGCAGCAGGTGGCGAGGCTGATGGAGAAGGATATGGGATCGGCGATGCAGTATTTGCAAGGGAAAGGACTCTGTCTTATGCCGATATCACTGGCAACAGCAATTTCGACGTCCACGTGTCCCTCGAGGAATCCGATTATCAACGGCAGCGGCGGGCATCCAGTGATGGGATCAAACGGCGAAGGGCCGTCGTCGCCGAGCATGTCGGTGTTAACAGTGCAGTCGACGAGCATGGGAAACGGATCCGTCAAGGACGCGGCCTCCGATTGACCTTTTTTTATGTTTTTGTTTGATAAGAAAGCAGTCAACTACTATACAAGTCTTCAATGAAAAATAAGGCATCTTTCACAATTCGGCGCCGTATTTTTTGTGGGTTTCTGTGGGGTGGCCTTAAAAAGCAAAGGCAAAGCCGAAGGCAAAGGCAAAGGCACTTCCTTCTGACATCAAAAGCTTCTCCTTTACACCATATCCTAAGAAATATCCTAAGAAGCAAAGGCAAAGGCATAGGATATTGATTTAACTTTTTTTTTTTAATGACCTTTCCAGAATGTTTACAAAATATTAACATAACCCAT

mRNA sequence

ATTTAATAATCAAACCCTCAACTCTCAACAAAGAACACCAAATTCAATTCCCTCCGCCGTCTTCTTCCTCTTCCTCCGCCACTCCGCCGGCGACGATGCAGCCCTGTAGCAGAGAAATGCAAAGCCTCAACTCTCTTTTAAACAACTCTCAAATCTCCCTTCAGGATCTCCACGGCGACGAACACCATCTGAATCCGCCGTCGGAGCAGATTCCGGGGTCTCAGCTCCACCATTTCGATCCGGTAGCCGCCGCCTCTCACGATGACTTCCTCGAGCAAATGCTCCATACAATCCCATCCTGTTCGTGGCCGGACCTCAACCCTTCAAACCCTAAATCCCCGTGGGACATTAACCCCATCAATAAGCCATCCAGAGATATCTCCGACACCTCTCCCGCTGCCAAGGCTGTCGTCATGCTCCAGCAACAGCTTCTATTGTCCAGAGGCATATCCTCTGTCGCCGATCATGGCCTCCCCCCTATGCCTCTCTCCCTTAGTAATGCCGATTTGGACCGCTCCCACAACGATATCGTCGACAGATCCTGCTTCCGGCCACCAAACTCGGGAGGTGGTATTCAATCGCATAGTTTCGGAGCTCAAGGAAATATGATGAATCAAGCTCCGGACGGTGGGTCCGGCGGGATTTCTCCATCTCAGCCGAAACAGAAAGTCAGAGCTCGCAGGGGCCAAGCCACTGACCCCCACAGTATCGCGGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCCCTGCAAGAACTCGTTCCCAACGCAAACAAGACAGATAAGGCTTCAATGCTGGATGAGATCATCGACTACGTTAAATTCCTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCCGGTTAGGGGGTGCAGCTGCGGTTGCTCCTCTCGTTGCTGACGTGTCCGATGAGGGTGGTGGTGAGTGTATGCAAGGTGGGCGGAGTTCAAACGGCAGCGGAGGAAACCAAACGGCGTCATCAAACGACAGTGTGACAGTGACGGAGCAGCAGGTGGCGAGGCTGATGGAGAAGGATATGGGATCGGCGATGCAGTATTTGCAAGGGAAAGGACTCTGTCTTATGCCGATATCACTGGCAACAGCAATTTCGACGTCCACGTGTCCCTCGAGGAATCCGATTATCAACGGCAGCGGCGGGCATCCAGTGATGGGATCAAACGGCGAAGGGCCGTCGTCGCCGAGCATGTCGGTGTTAACAGTGCAGTCGACGAGCATGGGAAACGGATCCGTCAAGGACGCGGCCTCCGATTGACCTTTTTTTATGTTTTTGTTTGATAAGAAAGCAGTCAACTACTATACAAGTCTTCAATGAAAAATAAGGCATCTTTCACAATTCGGCGCCGTATTTTTTGTGGGTTTCTGTGGGGTGGCCTTAAAAAGCAAAGGCAAAGCCGAAGGCAAAGGCAAAGGCACTTCCTTCTGACATCAAAAGCTTCTCCTTTACACCATATCCTAAGAAATATCCTAAGAAGCAAAGGCAAAGGCATAGGATATTGATTTAACTTTTTTTTTTTAATGACCTTTCCAGAATGTTTACAAAATATTAACATAACCCAT

Coding sequence (CDS)

ATGCAGCCCTGTAGCAGAGAAATGCAAAGCCTCAACTCTCTTTTAAACAACTCTCAAATCTCCCTTCAGGATCTCCACGGCGACGAACACCATCTGAATCCGCCGTCGGAGCAGATTCCGGGGTCTCAGCTCCACCATTTCGATCCGGTAGCCGCCGCCTCTCACGATGACTTCCTCGAGCAAATGCTCCATACAATCCCATCCTGTTCGTGGCCGGACCTCAACCCTTCAAACCCTAAATCCCCGTGGGACATTAACCCCATCAATAAGCCATCCAGAGATATCTCCGACACCTCTCCCGCTGCCAAGGCTGTCGTCATGCTCCAGCAACAGCTTCTATTGTCCAGAGGCATATCCTCTGTCGCCGATCATGGCCTCCCCCCTATGCCTCTCTCCCTTAGTAATGCCGATTTGGACCGCTCCCACAACGATATCGTCGACAGATCCTGCTTCCGGCCACCAAACTCGGGAGGTGGTATTCAATCGCATAGTTTCGGAGCTCAAGGAAATATGATGAATCAAGCTCCGGACGGTGGGTCCGGCGGGATTTCTCCATCTCAGCCGAAACAGAAAGTCAGAGCTCGCAGGGGCCAAGCCACTGACCCCCACAGTATCGCGGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCCCTGCAAGAACTCGTTCCCAACGCAAACAAGACAGATAAGGCTTCAATGCTGGATGAGATCATCGACTACGTTAAATTCCTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCCGGTTAGGGGGTGCAGCTGCGGTTGCTCCTCTCGTTGCTGACGTGTCCGATGAGGGTGGTGGTGAGTGTATGCAAGGTGGGCGGAGTTCAAACGGCAGCGGAGGAAACCAAACGGCGTCATCAAACGACAGTGTGACAGTGACGGAGCAGCAGGTGGCGAGGCTGATGGAGAAGGATATGGGATCGGCGATGCAGTATTTGCAAGGGAAAGGACTCTGTCTTATGCCGATATCACTGGCAACAGCAATTTCGACGTCCACGTGTCCCTCGAGGAATCCGATTATCAACGGCAGCGGCGGGCATCCAGTGATGGGATCAAACGGCGAAGGGCCGTCGTCGCCGAGCATGTCGGTGTTAACAGTGCAGTCGACGAGCATGGGAAACGGATCCGTCAAGGACGCGGCCTCCGATTGA

Protein sequence

MQPCSREMQSLNSLLNNSQISLQDLHGDEHHLNPPSEQIPGSQLHHFDPVAAASHDDFLEQMLHTIPSCSWPDLNPSNPKSPWDINPINKPSRDISDTSPAAKAVVMLQQQLLLSRGISSVADHGLPPMPLSLSNADLDRSHNDIVDRSCFRPPNSGGGIQSHSFGAQGNMMNQAPDGGSGGISPSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSDEGGGECMQGGRSSNGSGGNQTASSNDSVTVTEQQVARLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCPSRNPIINGSGGHPVMGSNGEGPSSPSMSVLTVQSTSMGNGSVKDAASD

Homology

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BLAST of CmaCh11G004730 vs. ExPASy Swiss-Prot
Match: D0PX88 (bHLH transcription factor RHL1 OS=Lotus japonicus OX=34305 GN=RHL1 PE=2 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.2e-81
Identity = 208/377 (55.17%), Postives = 247/377 (65.52%), Query Frame = 0


Query: 47  FDPVAAASHDDFLEQMLHTIPSCSWPDLNPSNPKSPWDI--------NPINKPSRDISDT 106
           FDP    SHDDFLEQML T+PS   P+ + S   +P ++        + +N   R+   T
Sbjct: 12  FDP---TSHDDFLEQMLSTLPSFWDPNSDLSAETTPDNVAAFPFDEHSTLNSKFRNHQIT 71

Query: 107 SPAAK--AVVMLQQQLLL--SRGISSVADHGLPPMPLSLSNADLDRSHNDIV-------D 166
           SP  K  A +MLQQ LL   +  +    +    P P   ++A +   +N           
Sbjct: 72  SPTTKAAAALMLQQHLLQMPANDVVDPTNFFKSPNPGGEASASVQALYNGFTGSLNGTQP 131

Query: 167 RSCFRPPNSGGG--IQSHSFGAQGNMMNQAPDGGSGGISPSQPKQKVRARRGQATDPHSI 226
           +  F+ P  G    IQ  +FGA  N    A     GG +  Q K +VRARRGQATDPHSI
Sbjct: 132 QQHFQHPPQGNSNQIQGQNFGAT-NQAPPASGSAGGGGNQGQAKPRVRARRGQATDPHSI 191

Query: 227 AERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAV 286
           AERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAV
Sbjct: 192 AERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAV 251

Query: 287 APLVADVSDEGGGECMQGGRSSNGSGG-------NQTASSNDSVTVTEQQVARLMEKDMG 346
           APLVAD+S EGGG    G   +NG+GG          +++NDS+T+TE QVA+LME+DMG
Sbjct: 252 APLVADISSEGGGGGGGGDCVTNGAGGVLPRSTTTAASTTNDSLTMTEHQVAKLMEEDMG 311

Query: 347 SAMQYLQGKGLCLMPISLATAISTSTCPSRNPII--NGSGGHPVMGSNGEGPSSPSMSVL 393
           SAMQYLQGKGLCLMPISLATAIST+TC +R+P+I  N +       SNGEGPSSP+MSVL
Sbjct: 312 SAMQYLQGKGLCLMPISLATAISTATCHTRSPLIPNNLANLAAAAASNGEGPSSPNMSVL 371

[Close]

BLAST of CmaCh11G004730 vs. ExPASy Swiss-Prot
Match: Q9ZUG9 (Transcription factor LRL1 OS=Arabidopsis thaliana OX=3702 GN=LRL1 PE=1 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.7e-64
Identity = 157/243 (64.61%), Postives = 184/243 (75.72%), Query Frame = 0


Query: 153 PPNSGGGIQSHSFGAQGNMMNQAPDGGSGG---ISPSQPKQKVRARRGQATDPHSIAERL 212
           P  SGGG+ +     Q     QA    + G    +P Q + K+RARRGQATDPHSIAERL
Sbjct: 96  PQGSGGGLMNQQGQTQTQTQPQASASTATGGTVAAPPQSRTKIRARRGQATDPHSIAERL 155

Query: 213 RRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLV 272
           RRERIAERMKALQELVPN NKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAA+V+   
Sbjct: 156 RRERIAERMKALQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAASVS--- 215

Query: 273 ADVSDEGGGECMQGGRSSNGSGGNQTA-SSNDSVTVTEQQVARLMEKDMGSAMQYLQGKG 332
           + +S+ GG     G  SS   GG+QTA +SNDSVT+TE QVA+LME+DMGSAMQYLQGKG
Sbjct: 216 SQISEAGGS---HGNASSAMVGGSQTAGNSNDSVTMTEHQVAKLMEEDMGSAMQYLQGKG 275

Query: 333 LCLMPISLATAISTSTCPSRNPIINGSGGHPVMGSNGEGPSSPSMSVLTVQSTS--MGNG 390
           LCLMPISLATAIST+TC SRNP+I G+       ++  GPS P++S +T+QSTS  MG+G
Sbjct: 276 LCLMPISLATAISTATCHSRNPLIPGA------VADVGGPSPPNLSGMTIQSTSTKMGSG 326

[Close]

BLAST of CmaCh11G004730 vs. ExPASy Swiss-Prot
Match: Q8S3D5 (Transcription factor LRL2 OS=Arabidopsis thaliana OX=3702 GN=LRL2 PE=2 SV=2)

HSP 1 Score: 214.9 bits (546), Expect = 1.6e-54
Identity = 169/370 (45.68%), Postives = 201/370 (54.32%), Query Frame = 0


Query: 32  LNPPSEQIPGSQLHHFDPVAAASHDDFLEQMLHTIPSCSWP-DLNPSNPKSPWDINPINK 91
           L P S   P     H    A   HDDFL    H   S  WP  +    P    D  P+  
Sbjct: 7   LTPSSSPSP-----HLQSPATFDHDDFLH---HIFSSTPWPSSVLDDTPPPTSDCAPVTG 66

Query: 92  PSRDISDTSPAAKAVVMLQQQLLLSRGISSVADHGLPPMPLSLSNADLDRSHNDIVDRSC 151
                +D+          + Q+ +              +PLS  N   D   N     S 
Sbjct: 67  FHHHDADS----------RNQITM--------------IPLS-HNHPNDALFNGFSTGSL 126

Query: 152 -FRPPNSGGGIQSHSFGAQGNMMNQAPDGGSGGISPSQP--KQKVRARRGQATDPHSIAE 211
            F  P   GG        Q    +QA    + G + +QP  K KVRARRGQATDPHSIAE
Sbjct: 127 PFHLPQGSGG--------QTQTQSQATASATTGGATAQPQTKPKVRARRGQATDPHSIAE 186

Query: 212 RLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAP 271
           RLRRERIAERMK+LQELVPN NKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAA+ + 
Sbjct: 187 RLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAASAS- 246

Query: 272 LVADVSDEGGGECMQGGRSSNGSGGNQTASSNDSVTVTEQQVARLMEKDMGSAMQYLQGK 331
             + +S++ G             G ++  SS+    +TE QVA+LME+DMGSAMQYLQGK
Sbjct: 247 --SQISEDAG-------------GSHENTSSSGEAKMTEHQVAKLMEEDMGSAMQYLQGK 306

Query: 332 GLCLMPISLATAISTSTCPSRNPIINGSGGHPVMGSNGEGPSSPSMSVLTVQSTSMGNGS 391
           GLCLMPISLAT IST+TCPSR+P +  +G           P SP++S   V +   GNGS
Sbjct: 307 GLCLMPISLATTISTATCPSRSPFVKDTG----------VPLSPNLSTTIVAN---GNGS 306

Query: 392 ----VKDAAS 394
               VKDA S
Sbjct: 367 SLVTVKDAPS 306

[Close]

BLAST of CmaCh11G004730 vs. ExPASy Swiss-Prot
Match: Q9LSQ3 (Transcription factor LRL3 OS=Arabidopsis thaliana OX=3702 GN=LRL3 PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 6.1e-54
Identity = 140/232 (60.34%), Postives = 156/232 (67.24%), Query Frame = 0


Query: 127 PPMPLSLSNA-DLDRSHNDIVDRSCFRPPNSGGGIQSHSFGAQGNMMNQAPDGGSGGISP 186
           PP P SL +A  +D    D        P  SGG       G Q       P G     S 
Sbjct: 42  PPPPQSLFHALAVDAPFPD----QFHHPQESGGPTMGSQEGLQ-------PQGTVSTTSA 101

Query: 187 SQPKQK--VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 246
              +QK  VRARRGQATDPHSIAERLRRERIAERMK+LQELVPN NKTDKASMLDEII+Y
Sbjct: 102 PVVRQKPRVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEY 161

Query: 247 VKFLQLQVKVLSMSRLGGAAAVAPLVADVSDEGGGECMQGGRSSNG--SGGNQTASSNDS 306
           V+FLQLQVKVLSMSRLGGA +V P +  +S E GG         NG    GN T SSN+S
Sbjct: 162 VRFLQLQVKVLSMSRLGGAGSVGPRLNGLSAEAGGRLNALTAPCNGLNGNGNATGSSNES 221

Query: 307 VTVTEQQVARLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCPSRNPIIN 354
           +  TEQ+VA+LME+DMGSAMQYLQGKGLCLMPISLATAIS+ST  SR  + N
Sbjct: 222 LRSTEQRVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISSSTTHSRGSLFN 262

[Close]

BLAST of CmaCh11G004730 vs. ExPASy Swiss-Prot
Match: O22768 (Transcription factor UNE12 OS=Arabidopsis thaliana OX=3702 GN=UNE12 PE=1 SV=2)

HSP 1 Score: 177.9 bits (450), Expect = 2.2e-43
Identity = 117/222 (52.70%), Postives = 142/222 (63.96%), Query Frame = 0


Query: 140 RSHNDIVDRSCFRPPNSGGGIQSHSFGAQGNMMNQAPDGGSGGISPSQPKQKVRARRGQA 199
           R  +D+VD  C           S      G  M Q P   S    P+  + +VRARRGQA
Sbjct: 106 RFSDDVVDNRC----------SSMKPVFHGQPMQQPPP--SAPHQPTSIRPRVRARRGQA 165

Query: 200 TDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRL 259
           TDPHSIAERLRRERIAER++ALQELVP  NKTD+A+M+DEI+DYVKFL+LQVKVLSMSRL
Sbjct: 166 TDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMSRL 225

Query: 260 GGAAAVAPLVAD--VSDEGGGECMQGGRSSNGSGGNQTASSNDSVTVTEQQVARLMEKDM 319
           GGA AVAPLV D  +S     E  +GGR+       Q A    S   TE+QVA+LME+++
Sbjct: 226 GGAGAVAPLVTDMPLSSSVEDETGEGGRTP------QPAWEKWSNDGTERQVAKLMEENV 285

Query: 320 GSAMQYLQGKGLCLMPISLATAISTSTCPSRNPIINGSGGHP 360
           G+AMQ LQ K LC+MPISLA AI  S  P  + ++      P
Sbjct: 286 GAAMQLLQSKALCMMPISLAMAIYHSQPPDTSSVVKPENNPP 309

[Close]

BLAST of CmaCh11G004730 vs. TAIR 10
Match: AT2G24260.1 (LJRHL1-like 1 )

HSP 1 Score: 248.1 bits (632), Expect = 1.2e-65
Identity = 157/243 (64.61%), Postives = 184/243 (75.72%), Query Frame = 0


Query: 153 PPNSGGGIQSHSFGAQGNMMNQAPDGGSGG---ISPSQPKQKVRARRGQATDPHSIAERL 212
           P  SGGG+ +     Q     QA    + G    +P Q + K+RARRGQATDPHSIAERL
Sbjct: 96  PQGSGGGLMNQQGQTQTQTQPQASASTATGGTVAAPPQSRTKIRARRGQATDPHSIAERL 155

Query: 213 RRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLV 272
           RRERIAERMKALQELVPN NKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAA+V+   
Sbjct: 156 RRERIAERMKALQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAASVS--- 215

Query: 273 ADVSDEGGGECMQGGRSSNGSGGNQTA-SSNDSVTVTEQQVARLMEKDMGSAMQYLQGKG 332
           + +S+ GG     G  SS   GG+QTA +SNDSVT+TE QVA+LME+DMGSAMQYLQGKG
Sbjct: 216 SQISEAGGS---HGNASSAMVGGSQTAGNSNDSVTMTEHQVAKLMEEDMGSAMQYLQGKG 275

Query: 333 LCLMPISLATAISTSTCPSRNPIINGSGGHPVMGSNGEGPSSPSMSVLTVQSTS--MGNG 390
           LCLMPISLATAIST+TC SRNP+I G+       ++  GPS P++S +T+QSTS  MG+G
Sbjct: 276 LCLMPISLATAISTATCHSRNPLIPGA------VADVGGPSPPNLSGMTIQSTSTKMGSG 326

[Close]

BLAST of CmaCh11G004730 vs. TAIR 10
Match: AT4G30980.1 (LJRHL1-like 2 )

HSP 1 Score: 214.9 bits (546), Expect = 1.1e-55
Identity = 169/370 (45.68%), Postives = 201/370 (54.32%), Query Frame = 0


Query: 32  LNPPSEQIPGSQLHHFDPVAAASHDDFLEQMLHTIPSCSWP-DLNPSNPKSPWDINPINK 91
           L P S   P     H    A   HDDFL    H   S  WP  +    P    D  P+  
Sbjct: 7   LTPSSSPSP-----HLQSPATFDHDDFLH---HIFSSTPWPSSVLDDTPPPTSDCAPVTG 66

Query: 92  PSRDISDTSPAAKAVVMLQQQLLLSRGISSVADHGLPPMPLSLSNADLDRSHNDIVDRSC 151
                +D+          + Q+ +              +PLS  N   D   N     S 
Sbjct: 67  FHHHDADS----------RNQITM--------------IPLS-HNHPNDALFNGFSTGSL 126

Query: 152 -FRPPNSGGGIQSHSFGAQGNMMNQAPDGGSGGISPSQP--KQKVRARRGQATDPHSIAE 211
            F  P   GG        Q    +QA    + G + +QP  K KVRARRGQATDPHSIAE
Sbjct: 127 PFHLPQGSGG--------QTQTQSQATASATTGGATAQPQTKPKVRARRGQATDPHSIAE 186

Query: 212 RLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAP 271
           RLRRERIAERMK+LQELVPN NKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAA+ + 
Sbjct: 187 RLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAASAS- 246

Query: 272 LVADVSDEGGGECMQGGRSSNGSGGNQTASSNDSVTVTEQQVARLMEKDMGSAMQYLQGK 331
             + +S++ G             G ++  SS+    +TE QVA+LME+DMGSAMQYLQGK
Sbjct: 247 --SQISEDAG-------------GSHENTSSSGEAKMTEHQVAKLMEEDMGSAMQYLQGK 306

Query: 332 GLCLMPISLATAISTSTCPSRNPIINGSGGHPVMGSNGEGPSSPSMSVLTVQSTSMGNGS 391
           GLCLMPISLAT IST+TCPSR+P +  +G           P SP++S   V +   GNGS
Sbjct: 307 GLCLMPISLATTISTATCPSRSPFVKDTG----------VPLSPNLSTTIVAN---GNGS 306

Query: 392 ----VKDAAS 394
               VKDA S
Sbjct: 367 SLVTVKDAPS 306

[Close]

BLAST of CmaCh11G004730 vs. TAIR 10
Match: AT5G58010.1 (LJRHL1-like 3 )

HSP 1 Score: 213.0 bits (541), Expect = 4.3e-55
Identity = 140/232 (60.34%), Postives = 156/232 (67.24%), Query Frame = 0


Query: 127 PPMPLSLSNA-DLDRSHNDIVDRSCFRPPNSGGGIQSHSFGAQGNMMNQAPDGGSGGISP 186
           PP P SL +A  +D    D        P  SGG       G Q       P G     S 
Sbjct: 42  PPPPQSLFHALAVDAPFPD----QFHHPQESGGPTMGSQEGLQ-------PQGTVSTTSA 101

Query: 187 SQPKQK--VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDY 246
              +QK  VRARRGQATDPHSIAERLRRERIAERMK+LQELVPN NKTDKASMLDEII+Y
Sbjct: 102 PVVRQKPRVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEY 161

Query: 247 VKFLQLQVKVLSMSRLGGAAAVAPLVADVSDEGGGECMQGGRSSNG--SGGNQTASSNDS 306
           V+FLQLQVKVLSMSRLGGA +V P +  +S E GG         NG    GN T SSN+S
Sbjct: 162 VRFLQLQVKVLSMSRLGGAGSVGPRLNGLSAEAGGRLNALTAPCNGLNGNGNATGSSNES 221

Query: 307 VTVTEQQVARLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCPSRNPIIN 354
           +  TEQ+VA+LME+DMGSAMQYLQGKGLCLMPISLATAIS+ST  SR  + N
Sbjct: 222 LRSTEQRVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISSSTTHSRGSLFN 262

[Close]

BLAST of CmaCh11G004730 vs. TAIR 10
Match: AT4G02590.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 177.9 bits (450), Expect = 1.5e-44
Identity = 117/222 (52.70%), Postives = 142/222 (63.96%), Query Frame = 0


Query: 140 RSHNDIVDRSCFRPPNSGGGIQSHSFGAQGNMMNQAPDGGSGGISPSQPKQKVRARRGQA 199
           R  +D+VD  C           S      G  M Q P   S    P+  + +VRARRGQA
Sbjct: 106 RFSDDVVDNRC----------SSMKPVFHGQPMQQPPP--SAPHQPTSIRPRVRARRGQA 165

Query: 200 TDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRL 259
           TDPHSIAERLRRERIAER++ALQELVP  NKTD+A+M+DEI+DYVKFL+LQVKVLSMSRL
Sbjct: 166 TDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMSRL 225

Query: 260 GGAAAVAPLVAD--VSDEGGGECMQGGRSSNGSGGNQTASSNDSVTVTEQQVARLMEKDM 319
           GGA AVAPLV D  +S     E  +GGR+       Q A    S   TE+QVA+LME+++
Sbjct: 226 GGAGAVAPLVTDMPLSSSVEDETGEGGRTP------QPAWEKWSNDGTERQVAKLMEENV 285

Query: 320 GSAMQYLQGKGLCLMPISLATAISTSTCPSRNPIINGSGGHP 360
           G+AMQ LQ K LC+MPISLA AI  S  P  + ++      P
Sbjct: 286 GAAMQLLQSKALCMMPISLAMAIYHSQPPDTSSVVKPENNPP 309

[Close]

BLAST of CmaCh11G004730 vs. TAIR 10
Match: AT4G02590.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 177.9 bits (450), Expect = 1.5e-44
Identity = 117/222 (52.70%), Postives = 142/222 (63.96%), Query Frame = 0


Query: 140 RSHNDIVDRSCFRPPNSGGGIQSHSFGAQGNMMNQAPDGGSGGISPSQPKQKVRARRGQA 199
           R  +D+VD  C           S      G  M Q P   S    P+  + +VRARRGQA
Sbjct: 106 RFSDDVVDNRC----------SSMKPVFHGQPMQQPPP--SAPHQPTSIRPRVRARRGQA 165

Query: 200 TDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRL 259
           TDPHSIAERLRRERIAER++ALQELVP  NKTD+A+M+DEI+DYVKFL+LQVKVLSMSRL
Sbjct: 166 TDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMSRL 225

Query: 260 GGAAAVAPLVAD--VSDEGGGECMQGGRSSNGSGGNQTASSNDSVTVTEQQVARLMEKDM 319
           GGA AVAPLV D  +S     E  +GGR+       Q A    S   TE+QVA+LME+++
Sbjct: 226 GGAGAVAPLVTDMPLSSSVEDETGEGGRTP------QPAWEKWSNDGTERQVAKLMEENV 285

Query: 320 GSAMQYLQGKGLCLMPISLATAISTSTCPSRNPIINGSGGHP 360
           G+AMQ LQ K LC+MPISLA AI  S  P  + ++      P
Sbjct: 286 GAAMQLLQSKALCMMPISLAMAIYHSQPPDTSSVVKPENNPP 309

The following BLAST results are available for this feature:

BLAST of CmaCh11G004730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
D0PX88	1.2e-81	55.17	bHLH transcription factor RHL1 OS=Lotus japonicus OX=34305 GN=RHL1 PE=2 SV=1	[more]
Q9ZUG9	1.7e-64	64.61	Transcription factor LRL1 OS=Arabidopsis thaliana OX=3702 GN=LRL1 PE=1 SV=1	[more]
Q8S3D5	1.6e-54	45.68	Transcription factor LRL2 OS=Arabidopsis thaliana OX=3702 GN=LRL2 PE=2 SV=2	[more]
Q9LSQ3	6.1e-54	60.34	Transcription factor LRL3 OS=Arabidopsis thaliana OX=3702 GN=LRL3 PE=2 SV=1	[more]
O22768	2.2e-43	52.70	Transcription factor UNE12 OS=Arabidopsis thaliana OX=3702 GN=UNE12 PE=1 SV=2	[more]

BLAST of CmaCh11G004730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24260.1	1.2e-65	64.61	LJRHL1-like 1	[more]
AT4G30980.1	1.1e-55	45.68	LJRHL1-like 2	[more]
AT5G58010.1	4.3e-55	60.34	LJRHL1-like 3	[more]
AT4G02590.1	1.5e-44	52.70	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G02590.2	1.5e-44	52.70	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 204..253 e-value: 1.5E-13 score: 61.0
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 203..248 e-value: 1.4E-9 score: 37.8
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 198..247 score: 17.389959
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 193..255 e-value: 1.4E-15 score: 58.9
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 196..258
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 277..305
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 283..305
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 350..394
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 365..394
None	No IPR available	PANTHER	PTHR16223	TRANSCRIPTION FACTOR BHLH83-RELATED	coord: 46..353
None	No IPR available	PANTHER	PTHR16223:SF120	TRANSCRIPTION FACTOR BHLH69	coord: 46..353

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G004730.1	CmaCh11G004730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding