CmaCh11G004600 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G004600
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionEukaryotic translation initiation factor 5A
LocationCma_Chr11: 2241935 .. 2244824 (-)
RNA-Seq ExpressionCmaCh11G004600
SyntenyCmaCh11G004600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAAGCGGTACGAAACGGCGATTGGAATGCGGGAGAGAGAAATCCAACGGCCACGATTTCATCTCTCTCAATTCGGAATTTGCGCCTCTGAAAAAGTCTGGAATATTAGAGCGGATTGCTTCGTCATCTTCAGTAAGGGGACATTGAGGACTGTGCGGGTGACTTTGCGAGAGCAACACAGAACAAGGGCCTGAAATCGAGGAGGGACAAACGACGGTGCAGCGATGTCGGACGAGGAACACCACTTCGATTCTAAGGCCGACGCCGGAGCGTCCAAGACTTTCCCTCAGCAAGCTGGTACCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGGCCCTGCAAGGTTTTTTCCTTTTTCCTTTTTCTCCATACCGTTTTGAAACTCGCGTTGATCATCCATGGATTATATTTTGGGCTTTTTTATAATCTTTTTGAGCTTTTCGACTACATTCTTTATTATAATTTTTCTTTTTATCTCTCTGTTTTCTGAAAGGGTAGACGTTTGATTGCTTCGCTTGTTTCGATACTTCTATTTCTAAGTGAAGATGGTCCCTAACTTTTAACTCGGTGACTAATGATTATAGCAATTGTTACTCCCTCATTGATTTAGGTTATTTTTCCCCTTTAATTTCTCTTTGTGGGGCCTTCTGCTTTTGGATTCCTTCAAGTATTTATAGAATAGTTCTACACAAGTATTGTGGATGAATTATAAAGTAAGTTTTCCTGAAAGGATTTTGGTTGTCCTTTTGGGGCTTTCCCATCCCGGCTTCCCTCAAAGTTTTAAAATGTGATCTCACAATAAACTATTGAATAGGTCGTGCAAGATTTGACATAATTGGTTTGGTGTAAGTGCAAGACTGAAAAATTCAGGGTCACGGGTTCATTATCTTTAATGGCAAGTGATTCTTTCACTTCAGTTGGATCAGGATGCGTAATGAAATATGCAGCCTTGGTCTGTCAGAAATGTAGCTTGTGCATGTGTTGTCCTTATTAAGTATTTTGAGATGGACTTGGCTTCTTGACTTGTTTGAGTTTCGCTATGGGACATGCCATTAAACAGTTCAATTGGGTCATGCTGTCATATCCTATATATACCATTATCGCCAATGTCCCTGTTGTGTTGCACATTAACAAACAATGAGGTAGATGTTAAGCTAAAATGTTAACAGCGGATATAATCTTCATGTTGCAATTATCTTCTTAGTATTAATAGAACTTGTTTGAAGTGCATTAACGATGCTTTGAAAGAAATGTTTTTGAAGTGGATTTGCTTTGCTTCTCATTCCCAGAAAGAAATATGCTGTATGTCACAATCACACTCTTATGGGATGATTGTCAGCGATTAAGCGACATTTACTCTCACCATTAAGTGAATCAGCAGACTCAAAATCGTGTCTCTTTCAGTCGTATGATGTATACCCAAGCCTCTGTCCCCATTTTAAGAAGAAGGTTTTAGAAAACGGGGGTAAAAAAAGATTTTAAAGAGAGAGTTTGGAAAGAGAGTTTGAAAGGAAGATTAGAACCAACGAAGAAAGCAATGTTATAAGCTAGTAAGTAAAGAAAGCAACATAACGGCTTAGATAACATATAACTCTGGGTAGGAAGAATTGACAACTAGTCGCATCTCCTCGAAACGTCATACGCTTAGAAAATACAATAAGAAACTATACATCATGAAAGCGGTAAAGGGAAGCAATAAAGTGGTCAACACAAGGGGTTTGACATGCAATGGGCGTGTGGCCATGGGCAACTCGCTTTGGACAGACATGACCAGGACACTATGCTTGTCTCCTTGTGTTTCTGTCAAATATGATAATATTGCTGAACTTTTACTCGTGGGCAGCTCATGACTTCCGCTACATACCAGGGCATATACCATCGGTTTTTTCTTGACTCTCTTCCATTCAGGTTGTTGAAGTTTCCACTTCAAAAACTGGAAAGCATGGACATGCGAAGTGTCACTTTGTGGCAATTGACATATTCAATGGAAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTAATTTCTTTGCAACTCTCTTCTCATGTTTGATTCTATTCTTCCAATGGAACTGTTTTCATTATTCTTCATATTACGGTGCTTTTGCAGGTTCCCCATGTTAATCGTACTGACTATCAGCTGATTGATATATCTGAGGATGGTTTCGTAAGTTTTAATCATACTTTTACATGATGTCCACCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCAGGTTTATAAAAAGATTAGTAAAAAGATTAGATGTGTAATGGCCTAAGCCCACCGCTAGCAATTATTATCCTCTTTGGACTTTTCCTTTCGGACTTCCCCTCAATGTTTTTAAAACGTGTTTGCTAGGGAGAAGTTTCTACATCCTTATAAAAAATGCTTTGTTTTCCTCTCAACTGTTGTGAGATCTCACAATTGGAATCCTACAGTCCTTGTAGCATGACGATCTCGAGTCTTGACCGATGGATACATAATTTTGCAGGTCAGTCTGCTTACTGAAAATGGAAACACTAAGGATGACCTGAGGCTTCCCACCGATGATAATCTGCTTACGCAGGTACACATGATGATACAGTTAAGTCATTACTAAGTAGCTTTCTGCAATGTCATAAATTGTTTCATTCATTTTCATGTCAATAGCTTAAAGATGGGTTCGCTGAAGGAAAAGATCTTGTTCTAACGGTTATGTCTGCAATGGGAGAGGAGCAGATCTGTGCTCTCAAGGACATCGGTCCTAAAGGCTAA

mRNA sequence

GAAAAAGCGGTACGAAACGGCGATTGGAATGCGGGAGAGAGAAATCCAACGGCCACGATTTCATCTCTCTCAATTCGGAATTTGCGCCTCTGAAAAAGTCTGGAATATTAGAGCGGATTGCTTCGTCATCTTCAGTAAGGGGACATTGAGGACTGTGCGGGTGACTTTGCGAGAGCAACACAGAACAAGGGCCTGAAATCGAGGAGGGACAAACGACGGTGCAGCGATGTCGGACGAGGAACACCACTTCGATTCTAAGGCCGACGCCGGAGCGTCCAAGACTTTCCCTCAGCAAGCTGGTACCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGGCCCTGCAAGGTTGTTGAAGTTTCCACTTCAAAAACTGGAAAGCATGGACATGCGAAGTGTCACTTTGTGGCAATTGACATATTCAATGGAAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTTCCCCATGTTAATCGTACTGACTATCAGCTGATTGATATATCTGAGGATGGTTTCGATGACCTGAGGCTTCCCACCGATGATAATCTGCTTACGCAGCTTAAAGATGGGTTCGCTGAAGGAAAAGATCTTGTTCTAACGGTTATGTCTGCAATGGGAGAGGAGCAGATCTGTGCTCTCAAGGACATCGGTCCTAAAGGCTAA

Coding sequence (CDS)

ATGTCGGACGAGGAACACCACTTCGATTCTAAGGCCGACGCCGGAGCGTCCAAGACTTTCCCTCAGCAAGCTGGTACCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGGCCCTGCAAGGTTGTTGAAGTTTCCACTTCAAAAACTGGAAAGCATGGACATGCGAAGTGTCACTTTGTGGCAATTGACATATTCAATGGAAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTTCCCCATGTTAATCGTACTGACTATCAGCTGATTGATATATCTGAGGATGGTTTCGATGACCTGAGGCTTCCCACCGATGATAATCTGCTTACGCAGCTTAAAGATGGGTTCGCTGAAGGAAAAGATCTTGTTCTAACGGTTATGTCTGCAATGGGAGAGGAGCAGATCTGTGCTCTCAAGGACATCGGTCCTAAAGGCTAA

Protein sequence

MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFDDLRLPTDDNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKG
Homology
[Close]
BLAST of CmaCh11G004600 vs. ExPASy Swiss-Prot
Match: Q9AXJ4 (Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV=2)

HSP 1 Score: 284.6 bits (727), Expect = 6.2e-76
Identity = 138/159 (86.79%), Postives = 147/159 (92.45%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKTFPQQAGTIRKNGYIVIKNRPCKV+EVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF-----------DDLRLPTD 120
           V IDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF           DDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 149
           +NLL+Q+KDGFAEGKDLV++VMSAMGEE+IC+LKDIGPK
Sbjct: 121 ENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPK 159

[Close]
BLAST of CmaCh11G004600 vs. ExPASy Swiss-Prot
Match: P24922 (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.1e-75
Identity = 139/159 (87.42%), Postives = 145/159 (91.19%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH F+SKADAGASKT+PQQAGTIRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF-----------DDLRLPTD 120
           VAIDIF GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF           DDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 149
           DNLLTQ+KDGFAEGKDLV++VMSAMGEEQICALKDIGPK
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of CmaCh11G004600 vs. ExPASy Swiss-Prot
Match: P69039 (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 5.3e-75
Identity = 137/159 (86.16%), Postives = 144/159 (90.57%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKT+PQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF-----------DDLRLPTD 120
           VAIDIF GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF           DDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 149
           DNLL  +KDGFAEGKDLVL+VMSAMGEEQIC +KD+GPK
Sbjct: 121 DNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159

[Close]
BLAST of CmaCh11G004600 vs. ExPASy Swiss-Prot
Match: P69040 (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum OX=4097 GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 5.3e-75
Identity = 137/159 (86.16%), Postives = 144/159 (90.57%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKT+PQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF-----------DDLRLPTD 120
           VAIDIF GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF           DDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 149
           DNLL  +KDGFAEGKDLVL+VMSAMGEEQIC +KD+GPK
Sbjct: 121 DNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159

[Close]
BLAST of CmaCh11G004600 vs. ExPASy Swiss-Prot
Match: Q945F4 (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 5.3e-75
Identity = 137/159 (86.16%), Postives = 146/159 (91.82%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+  ADAGASKT+PQQAGTIRKNGYIVIK+RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFEPAADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF-----------DDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF           DDL+LPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 149
           D+LLTQ+KDGFA+GKDLV++VMSAMGEEQICALKDIGPK
Sbjct: 121 DSLLTQIKDGFADGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of CmaCh11G004600 vs. TAIR 10
Match: AT1G13950.1 (eukaryotic elongation factor 5A-1 )

HSP 1 Score: 260.4 bits (664), Expect = 8.9e-70
Identity = 130/159 (81.76%), Postives = 139/159 (87.42%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+S +DAGASKT+PQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF-----------DDLRLPTD 120
           VAIDIF  KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDG+           DDL+LP D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPND 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 149
           D LL Q+K GF +GKDLV++VMSAMGEEQI ALKDIGPK
Sbjct: 121 DTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158

[Close]
BLAST of CmaCh11G004600 vs. TAIR 10
Match: AT1G69410.1 (eukaryotic elongation factor 5A-3 )

HSP 1 Score: 255.4 bits (651), Expect = 2.9e-68
Identity = 125/159 (78.62%), Postives = 139/159 (87.42%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHF+S +DAGASKT+PQQAG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFES-SDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF-----------DDLRLPTD 120
           VAIDIF  KKLEDIVPSSHNCDVPHVNR DYQLIDISEDGF           DDL+LPTD
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 149
           + LLTQLK+GF EGKD+V++VMSAMGEEQ+CALK++GPK
Sbjct: 121 EALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158

[Close]
BLAST of CmaCh11G004600 vs. TAIR 10
Match: AT1G26630.1 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 239.2 bits (609), Expect = 2.1e-63
Identity = 115/157 (73.25%), Postives = 134/157 (85.35%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHF++ +++GASKT+PQ AG IRK G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF-----------DDLRLPTD 120
           VAIDIF  KKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGF           DDL+LPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIG 147
           D L  Q++ GF EGKD+V++VMS+MGEEQICA+K++G
Sbjct: 121 DGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 156

[Close]
BLAST of CmaCh11G004600 vs. TAIR 10
Match: AT1G26630.2 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-50
Identity = 96/127 (75.59%), Postives = 106/127 (83.46%), Query Frame = 0 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHF++ +++GASKT+PQ AG IRK G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGF-----------DDLRLPTD 117
           VAIDIF  KKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGF           DDL+LPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

The following BLAST results are available for this feature:
BLAST of CmaCh11G004600 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9AXJ46.2e-7686.79Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV... [more]
P249223.1e-7587.42Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=40... [more]
P690395.3e-7586.16Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=40... [more]
P690405.3e-7586.16Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum OX=4097 GN=EI... [more]
Q945F45.3e-7586.16Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa OX=3879 PE=2 SV... [more]
BLAST of CmaCh11G004600 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G13950.18.9e-7081.76eukaryotic elongation factor 5A-1 [more]
AT1G69410.12.9e-6878.62eukaryotic elongation factor 5A-3 [more]
AT1G26630.12.1e-6373.25Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein [more]
AT1G26630.21.6e-5075.59Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020189Translation elongation factor, IF5A C-terminalSMARTSM01376eIF_5a_2coord: 85..143
e-value: 8.2E-19
score: 78.5
IPR020189Translation elongation factor, IF5A C-terminalPFAMPF01287eIF-5acoord: 85..143
e-value: 9.6E-16
score: 57.7
IPR001884Translation elongation factor IF5A-likeTIGRFAMTIGR00037TIGR00037coord: 18..142
e-value: 8.4E-36
score: 120.6
IPR001884Translation elongation factor IF5A-likePIRSFPIRSF003025Transl_init_eIF5Acoord: 1..146
e-value: 2.0E-57
score: 191.0
IPR001884Translation elongation factor IF5A-likePANTHERPTHR11673TRANSLATION INITIATION FACTOR 5A FAMILY MEMBERcoord: 1..145
NoneNo IPR availableGENE3D2.40.50.140coord: 86..147
e-value: 5.2E-18
score: 66.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR11673:SF42BNAA07G09420D PROTEINcoord: 1..145
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 1..85
e-value: 4.6E-43
score: 147.0
IPR019769Translation elongation factor, IF5A, hypusine sitePROSITEPS00302IF5A_HYPUSINEcoord: 50..57
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 15..93
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 86..145

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G004600.1CmaCh11G004600.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045901 positive regulation of translational elongation
biological_process GO:0045905 positive regulation of translational termination
biological_process GO:0006413 translational initiation
molecular_function GO:0043022 ribosome binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003723 RNA binding