CmaCh11G004430 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G004430
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	CDK-activating kinase assembly factor MAT1
Location	Cma_Chr11: 2169671 .. 2172377 (-)
RNA-Seq Expression	CmaCh11G004430
Synteny	CmaCh11G004430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCCAAACTAGCAAACTCCCCTTCTTCAGGAATCAGGGCTCATTCGACGGACCGTCTCCGCCGCTAAGGATCTGAAACCTTTACTGCGGTTCAGGTACTCTTATTGTTTTAGTTAGCTTCTGTCTTCTATGCTTTTGTTGCTTCAGTATGCTTCGAAGGGTGTTTCCGTCGTTTTCTGCACCCGACTGTAAATGAAATTAGGCTGTTTCTCTCATTCATTTGGGCTGTTATGGTTGGAACATCGACTTTGAATGTACTTGAATCTGTTTTATGCGTAAACTTGTGTTTCGGAGGCTACTATTTTTGAGTCTAGGCTCATGATTTTGTGCCGAAATCAACTTAATTGTCTATTCTTCACGTAGATTCGGTTTTTTGTAATTTGAAATGAGTATGTTTGTTTTAAAATGCAAGGATCTTTTTTGGAGGAACCAAATTTGAGACTCCTATACCACGTCGAAATCTCCATAACAATTTACACGGGTTAACCAGTTATAGAATACGACCGTCTTTTGATTCTTGTTTAATGATCCTAACGTGCCATGGGCATCTCTTGATGCAAGGCTGTACTGGTCTATTCTCGTGGTTACGTTATTGAATTAATTTACAAGTAATTCTGGTCAGGATTCAAACTTTAGAATTTCATGAAAATCGTTTATCCAGAATGGAAGTACCACACATTTTGGTTTAGTGTCTTGAAAGATACATCAATTTCTTGTTTATGTTTTTGCAGGTATGGCTTTGCAGGCAAGTGAAATATAGATAGAGAAAGAAAAAAGCTGAAAAGCAACAACAATGGTTGTCTCCAGCGGTATTTCTCATAGTAAGGAAATCAGTATCAGGAGGAGGATTGCTAGCATGTAAGTCTGACGCTGCTGCTCAACTTCTCGTTTTTACTCTTTATGTTTGTTTGAACCTTGTGCGCATACTGTAGCCGCATGTCACTGCTTTATGATACAATTGTCGTATATGGTTGCATTGTGTGTTTGGAATTGGAGAAGCAAAGGTTTACACCTTCCCAGATGCTTGTAGTGAACTAGGTATAAAGAACCAAAAGACAAAAGTGGTGTTATATTTTTTTTACTGCAAAAAGGCCTACATTTAAGGTCTCAAAACTTTCACTGAATGTGTGGAAAATAGATGGGTTTTCTAGTGATGTTTCAATTTGAATTTATTCAATGCTCATGTTATTGAGTTGGTTCTTGTTCTTGGATGGCGTACATGAACATGTATTTAATGTCTGAAGTGTCTTTGGTATTCTTTTTTACAGATTCAACAAGAGAGAAGATGATTTCCCATCCCTGAGAGAGTACAATGATTATCTGGAAGAAGTGGAGGACATGAGTATGCTCTTCCAGTACGGTTACTCTATCTCTTTATCTAGAATCATATTTGACCAGAAAATTTTATATTGCAGCTTTTAACTTGATTGAAGGCATAGATGTTCAAGCTATTGAAGCAAAAATTGCTAGATATCAAGAAGAAAATGCCGAACAAATAATGGTCAACCGAGCTCGCAAGGTATCTAGTTTATTACTTTTATGTATAAATTATTCCTTTATTCTCCTTTTAGCTCCAAATTGAGGACCTTGGCTCTCAATCACTATTTTTTTTTTCTTACTTAAGACATAACTTCCCTTTGAACTTCATGTTTCACTTTTTACTGAAAGGTTAATAAAACTTGTCGAACTATTTGATAGGCTGAAGAATATGCTGCAGCCCTTGCAGCAAGCAAGGGAATTCCCGCACAGACAGACAATGATGTGGTGAGCACATATTTCCTGTTTTTAATTGCTCATACTTTTCTGTCTTCTATCTGTTCCCTTATCTTTTTTTTATTGTTTACTGTTAACAATGTCTTTTGCATCAAATAAAAAGTTCTGCATTGTCTTCTGGATTCATCCTGATTGAAATATTGGAGTGTCATCGAACTTGCTGTCAAGTCTTTAAATAAGTGATGTTTATATGTGCCTGTGCTCACTTTTTGTTTCCTTATCATCTCCAAAAGTTGATGTTTATATGTTTCCATAAGAGTAACAATTCTCAACTCTGTATTTGTTTTCCAAAGGGATAGAACATAGAAGCTAGTAGAATAGTAGTACACGACACTCGATGTTTCTTTAAGAAAGATCTGGAGCAGAGAGTTCGAACAATTCTCCTAATTTTCATTTGATTGTTGTTGCAGGCTGCAGATCAAAGCTTCCAAGCAGGATTAAGCACAGGCACACAAGGTCAGTATGCACCTACATTTGCTGGAGGGCAGCCACGACCTACAGGCCAACCCGTGCCCCTTGGTGGCGGTCTTGACATGCAGGGCTATGGGCTTGACGATGAGGAAATGTTGAGGCTTAGAGCGGAGAGAGGTGGAAGGGCCGGTGGGTGGAGTGTAGAGTTCAGCAGAAAGCGTGCCCTTGAAGAAGCGTTTGGAAGTATTTGGATCTGCTAACTTACTTTTTTACAAAGGCAATCGGATTTTGGCACTCGAGTCCGAATGGTAAACGATTAATTGTGCACATTTAATTCTTATGAAGTATTAACTGGATTATAATATTAATTGTCTGTAGATATACCAGTGGGTAGAGACGAGGTTTGGTGAATGTGACTGGTAAATTACTGGTCTGATATTTAGTTTTTAATTTAAGAATAAAGTTTTATAGTTTGTGGTCAATTGACTGTGAACCTATTTTTACACGTGAAGCATTCTTCTAC

mRNA sequence

CCTCCAAACTAGCAAACTCCCCTTCTTCAGGAATCAGGGCTCATTCGACGGACCGTCTCCGCCGCTAAGGATCTGAAACCTTTACTGCGGTTCAGGTATGGCTTTGCAGGCAAGTGAAATATAGATAGAGAAAGAAAAAAGCTGAAAAGCAACAACAATGGTTGTCTCCAGCGGTATTTCTCATAGTAAGGAAATCAGTATCAGGAGGAGGATTGCTAGCATATTCAACAAGAGAGAAGATGATTTCCCATCCCTGAGAGAGTACAATGATTATCTGGAAGAAGTGGAGGACATGACTTTTAACTTGATTGAAGGCATAGATGTTCAAGCTATTGAAGCAAAAATTGCTAGATATCAAGAAGAAAATGCCGAACAAATAATGGTCAACCGAGCTCGCAAGGCTGAAGAATATGCTGCAGCCCTTGCAGCAAGCAAGGGAATTCCCGCACAGACAGACAATGATGTGGCTGCAGATCAAAGCTTCCAAGCAGGATTAAGCACAGGCACACAAGGTCAGTATGCACCTACATTTGCTGGAGGGCAGCCACGACCTACAGGCCAACCCGTGCCCCTTGGTGGCGGTCTTGACATGCAGGGCTATGGGCTTGACGATGAGGAAATGTTGAGGCTTAGAGCGGAGAGAGGTGGAAGGGCCGGTGGGTGGAGTGTAGAGTTCAGCAGAAAGCGTGCCCTTGAAGAAGCGTTTGGAAGTATTTGGATCTGCTAACTTACTTTTTTACAAAGGCAATCGGATTTTGGCACTCGAGTCCGAATGGTAAACGATTAATTGTGCACATTTAATTCTTATGAAGTATTAACTGGATTATAATATTAATTGTCTGTAGATATACCAGTGGGTAGAGACGAGGTTTGGTGAATGTGACTGGTAAATTACTGGTCTGATATTTAGTTTTTAATTTAAGAATAAAGTTTTATAGTTTGTGGTCAATTGACTGTGAACCTATTTTTACACGTGAAGCATTCTTCTAC

Coding sequence (CDS)

ATGGTTGTCTCCAGCGGTATTTCTCATAGTAAGGAAATCAGTATCAGGAGGAGGATTGCTAGCATATTCAACAAGAGAGAAGATGATTTCCCATCCCTGAGAGAGTACAATGATTATCTGGAAGAAGTGGAGGACATGACTTTTAACTTGATTGAAGGCATAGATGTTCAAGCTATTGAAGCAAAAATTGCTAGATATCAAGAAGAAAATGCCGAACAAATAATGGTCAACCGAGCTCGCAAGGCTGAAGAATATGCTGCAGCCCTTGCAGCAAGCAAGGGAATTCCCGCACAGACAGACAATGATGTGGCTGCAGATCAAAGCTTCCAAGCAGGATTAAGCACAGGCACACAAGGTCAGTATGCACCTACATTTGCTGGAGGGCAGCCACGACCTACAGGCCAACCCGTGCCCCTTGGTGGCGGTCTTGACATGCAGGGCTATGGGCTTGACGATGAGGAAATGTTGAGGCTTAGAGCGGAGAGAGGTGGAAGGGCCGGTGGGTGGAGTGTAGAGTTCAGCAGAAAGCGTGCCCTTGAAGAAGCGTTTGGAAGTATTTGGATCTGCTAA

Protein sequence

MVVSSGISHSKEISIRRRIASIFNKREDDFPSLREYNDYLEEVEDMTFNLIEGIDVQAIEAKIARYQEENAEQIMVNRARKAEEYAAALAASKGIPAQTDNDVAADQSFQAGLSTGTQGQYAPTFAGGQPRPTGQPVPLGGGLDMQGYGLDDEEMLRLRAERGGRAGGWSVEFSRKRALEEAFGSIWIC

Homology

[Close]

BLAST of CmaCh11G004430 vs. ExPASy Swiss-Prot
Match: P51950 (CDK-activating kinase assembly factor MAT1 OS=Marthasterias glacialis OX=7609 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.0e-14
Identity = 35/76 (46.05%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 11  KEISIRRRIASIFNKREDDFPSLREYNDYLEEVEDMTFNLIEGIDVQAIEAKIARYQEEN 70
           KE+ IR+RI   FNK+E++FP+L++YNDYLEE+E + FNL  G +++A + K+ +Y++ N
Sbjct: 71  KEVDIRKRILKDFNKQEEEFPALKDYNDYLEEIETIIFNLANGTELEATKRKVDQYRKNN 130

Query: 71  AEQIMVNRARKAEEYA 87
            E IM NR++++ + A
Sbjct: 131 RESIMKNRSKQSSDQA 146

[Close]

BLAST of CmaCh11G004430 vs. ExPASy Swiss-Prot
Match: P51948 (CDK-activating kinase assembly factor MAT1 OS=Homo sapiens OX=9606 GN=MNAT1 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-13
Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 11  KEISIRRRIASIFNKREDDFPSLREYNDYLEEVEDMTFNLIEGIDVQAIEAKIARYQEEN 70
           KE+ IR+++  I+NKRE+DFPSLREYND+LEEVE++ FNL   +D+   + K+  YQ+EN
Sbjct: 70  KEVEIRKKVLKIYNKREEDFPSLREYNDFLEEVEEIVFNLTNNVDLDNTKKKMEIYQKEN 129

Query: 71  AEQIMVNR---ARKAEEYAAALAASK 94
            + I  N+    R+ EE   AL   +
Sbjct: 130 KDVIQKNKLKLTREQEELEEALEVER 155

[Close]

BLAST of CmaCh11G004430 vs. ExPASy Swiss-Prot
Match: P51949 (CDK-activating kinase assembly factor MAT1 OS=Mus musculus OX=10090 GN=Mnat1 PE=1 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-13
Identity = 43/106 (40.57%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 11  KEISIRRRIASIFNKREDDFPSLREYNDYLEEVEDMTFNLIEGIDVQAIEAKIARYQEEN 70
           KE+ IR+++  I+NKRE+DFPSLREYND+LEEVE++ FNL   +D++  + K+  YQ+EN
Sbjct: 70  KEVEIRKKVLKIYNKREEDFPSLREYNDFLEEVEEIVFNLTNNVDLENTKKKMEIYQKEN 129

Query: 71  AEQIMVNR---ARKAEEYAAALAASKGIPAQTDNDVAADQSFQAGL 114
            + I  N+    R+ EE   AL   +    Q    +  ++  Q  L
Sbjct: 130 KDVIQKNKLKLTREQEELEEALEVERQEHEQRRLFIQKEEELQQAL 175

[Close]

BLAST of CmaCh11G004430 vs. ExPASy Swiss-Prot
Match: P51951 (CDK-activating kinase assembly factor MAT1 OS=Xenopus laevis OX=8355 GN=mnat1 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-13
Identity = 44/103 (42.72%), Postives = 62/103 (60.19%), Query Frame = 0


Query: 11  KEISIRRRIASIFNKREDDFPSLREYNDYLEEVEDMTFNLIEGIDVQAIEAKIARYQEEN 70
           KE+ IR++I  I+NKRE+DFPSLREYND+LEE+E++  NL   +D+     KI  YQ+EN
Sbjct: 70  KEVEIRKKILKIYNKREEDFPSLREYNDFLEEIEEIVLNLTNNVDLDNTRRKIDMYQKEN 129

Query: 71  AEQIMVNR---ARKAEEYAAALAASKGIPAQTDNDVAADQSFQ 111
            + I  N+    R+ EE   AL   K    Q    +  ++ FQ
Sbjct: 130 KDTIQRNKIKMTREQEELEEALEMEKHENEQRRLHLQKEEQFQ 172

[Close]

BLAST of CmaCh11G004430 vs. ExPASy Swiss-Prot
Match: O94684 (RNA polymerase II transcription factor B subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pmh1 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-13
Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 11  KEISIRRRIASIFNKREDDFPSLREYNDYLEEVEDMTFNLIEGIDVQAIEAKIARYQEEN 70
           +E+ +R+RI+ IFNK + +F SL+ YNDYLEEVE +TFNLI  IDV+  E K+ +Y+++N
Sbjct: 80  REVDVRKRISRIFNKGQQEFDSLQAYNDYLEEVEILTFNLIYKIDVEETEEKVKQYEKQN 139

Query: 71  AEQIMVNRARKAEE 85
            + I  N AR A E
Sbjct: 140 RDSIAANSARAAAE 153

[Close]

BLAST of CmaCh11G004430 vs. TAIR 10
Match: AT4G30820.1 (cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related )

HSP 1 Score: 185.3 bits (469), Expect = 4.6e-47
Identity = 104/191 (54.45%), Postives = 136/191 (71.20%), Query Frame = 0


Query: 1   MVVSSGISHSKEISIRRRIASIFNKREDDFPSLREYNDYLEEVEDMTFNLIEGIDVQAIE 60
           ++VS+    +KEI +RRRI+ I+N+RE++FPSL++YNDYLEEVE M F+LI+GI+V+AIE
Sbjct: 2   VMVSNSTHQNKEIHVRRRISEIYNRREEEFPSLKDYNDYLEEVECMVFDLIDGINVEAIE 61

Query: 61  AKIARYQEENAEQIMVNRARKAEEYAAALAASKGIPAQTDNDVAADQSFQAGLSTGTQGQ 120
            KI RY +ENAEQIM+NRARKAEE  AALAA K  P QTD D +++    AG        
Sbjct: 62  QKIKRYSKENAEQIMINRARKAEELTAALAACKAKPPQTDADTSSNHGVTAG-------- 121

Query: 121 YAPTFAGGQPRPTG---QPVPLGGGLDMQGYGLDDEEMLRLRAERGGRAGGWSVEFSRKR 180
              T  G   RPTG   QPVP+ GG + Q Y ++DE   R++AE   RAGG+S+E S++R
Sbjct: 122 ---TTYGQASRPTGMGPQPVPIVGGAERQHYAMEDEATRRMKAE---RAGGFSLEISKRR 178

Query: 181 ALEEAFGSIWI 189
           ALEEAF SIW+
Sbjct: 182 ALEEAFASIWV 178

[Close]

BLAST of CmaCh11G004430 vs. TAIR 10
Match: AT4G30820.2 (cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related )

HSP 1 Score: 185.3 bits (469), Expect = 4.6e-47
Identity = 104/191 (54.45%), Postives = 136/191 (71.20%), Query Frame = 0


Query: 1   MVVSSGISHSKEISIRRRIASIFNKREDDFPSLREYNDYLEEVEDMTFNLIEGIDVQAIE 60
           ++VS+    +KEI +RRRI+ I+N+RE++FPSL++YNDYLEEVE M F+LI+GI+V+AIE
Sbjct: 2   VMVSNSTHQNKEIHVRRRISEIYNRREEEFPSLKDYNDYLEEVECMVFDLIDGINVEAIE 61

Query: 61  AKIARYQEENAEQIMVNRARKAEEYAAALAASKGIPAQTDNDVAADQSFQAGLSTGTQGQ 120
            KI RY +ENAEQIM+NRARKAEE  AALAA K  P QTD D +++    AG        
Sbjct: 62  QKIKRYSKENAEQIMINRARKAEELTAALAACKAKPPQTDADTSSNHGVTAG-------- 121

Query: 121 YAPTFAGGQPRPTG---QPVPLGGGLDMQGYGLDDEEMLRLRAERGGRAGGWSVEFSRKR 180
              T  G   RPTG   QPVP+ GG + Q Y ++DE   R++AE   RAGG+S+E S++R
Sbjct: 122 ---TTYGQASRPTGMGPQPVPIVGGAERQHYAMEDEATRRMKAE---RAGGFSLEISKRR 178

Query: 181 ALEEAFGSIWI 189
           ALEEAF SIW+
Sbjct: 182 ALEEAFASIWV 178

[Close]

BLAST of CmaCh11G004430 vs. TAIR 10
Match: AT4G30820.3 (cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related )

HSP 1 Score: 185.3 bits (469), Expect = 4.6e-47
Identity = 104/191 (54.45%), Postives = 136/191 (71.20%), Query Frame = 0


Query: 1   MVVSSGISHSKEISIRRRIASIFNKREDDFPSLREYNDYLEEVEDMTFNLIEGIDVQAIE 60
           ++VS+    +KEI +RRRI+ I+N+RE++FPSL++YNDYLEEVE M F+LI+GI+V+AIE
Sbjct: 2   VMVSNSTHQNKEIHVRRRISEIYNRREEEFPSLKDYNDYLEEVECMVFDLIDGINVEAIE 61

Query: 61  AKIARYQEENAEQIMVNRARKAEEYAAALAASKGIPAQTDNDVAADQSFQAGLSTGTQGQ 120
            KI RY +ENAEQIM+NRARKAEE  AALAA K  P QTD D +++    AG        
Sbjct: 62  QKIKRYSKENAEQIMINRARKAEELTAALAACKAKPPQTDADTSSNHGVTAG-------- 121

Query: 121 YAPTFAGGQPRPTG---QPVPLGGGLDMQGYGLDDEEMLRLRAERGGRAGGWSVEFSRKR 180
              T  G   RPTG   QPVP+ GG + Q Y ++DE   R++AE   RAGG+S+E S++R
Sbjct: 122 ---TTYGQASRPTGMGPQPVPIVGGAERQHYAMEDEATRRMKAE---RAGGFSLEISKRR 178

Query: 181 ALEEAFGSIWI 189
           ALEEAF SIW+
Sbjct: 182 ALEEAFASIWV 178

The following BLAST results are available for this feature:

BLAST of CmaCh11G004430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51950	5.0e-14	46.05	CDK-activating kinase assembly factor MAT1 OS=Marthasterias glacialis OX=7609 PE...	[more]
P51948	1.1e-13	46.51	CDK-activating kinase assembly factor MAT1 OS=Homo sapiens OX=9606 GN=MNAT1 PE=1...	[more]
P51949	1.1e-13	40.57	CDK-activating kinase assembly factor MAT1 OS=Mus musculus OX=10090 GN=Mnat1 PE=...	[more]
P51951	1.1e-13	42.72	CDK-activating kinase assembly factor MAT1 OS=Xenopus laevis OX=8355 GN=mnat1 PE...	[more]
O94684	1.5e-13	51.35	RNA polymerase II transcription factor B subunit 3 OS=Schizosaccharomyces pombe ...	[more]

BLAST of CmaCh11G004430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30820.1	4.6e-47	54.45	cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activati...	[more]
AT4G30820.2	4.6e-47	54.45	cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activati...	[more]
AT4G30820.3	4.6e-47	54.45	cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activati...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 56..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..144
None	No IPR available	PANTHER	PTHR12683:SF14	BNAA03G51060D PROTEIN	coord: 2..188
None	No IPR available	PANTHER	PTHR12683	CDK-ACTIVATING KINASE ASSEMBLY FACTOR MAT1	coord: 2..188
IPR015877	Cdk-activating kinase assembly factor MAT1, centre	PFAM	PF06391	MAT1	coord: 11..88 e-value: 1.3E-31 score: 110.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G004430.1	CmaCh11G004430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005675	transcription factor TFIIH holo complex
molecular_function	GO:0016301	kinase activity