CmaCh11G004310 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G004310
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	tetraspanin-8
Location	Cma_Chr11: 2112478 .. 2114293 (-)
RNA-Seq Expression	CmaCh11G004310
Synteny	CmaCh11G004310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTGTGAATGAATGACCAAAAACAAATAGAATTTGAAAAATGAAGTGCAGAATTCTCAAAAACAATTAAAAGGTGAAAAGCTTTCCGTTTGGGAATTGGATTTGGAATTGGAGAGCCGCGTGAGGAACAGCCTGCCTAGAAGCTACATCGGAAGATCCCCGGTTTTAATCAAATTTGTAATAACAGCCGTCGCTTTTGAACTTTCAACCTGACATCACCACCGTCAACATTTCGTCCCCTAAACGCGCCTTCTCAAAACGCTATAAAACCAATCCACACCCATTCCCAAACACAAACACGCATCCTTTTACTTCCCATCCCCTCCCTTTCCTCTCTGTTTTACTGAATCATTTGGGCGTTGGTTCGCAACCATGGTGCGGTTTAGCAATAATCTGGTTGGGATTCTCAATTTCATAGTCTTTTTGCTCTCTATTCCAATCATCGCCGGTGGGATATGGCTCAGCCGACAGGGGACCTCCGACTGTGAGAAATTTCTCGACACGCCGGTTATCGTCATCGGAGTTTTCCTTCTATTGGTCTCTCTCGCGGGTTTCATCGGCGCCTGCTGCCGTGTCACATGGCTTCTCTGGATCTATCTCTTTGTCATGTTCATCCTCATCGTCCTTCTCTTCGTCTTCACCATCTTTGCCTTCGCCGTCACCAACAAAGGCGCCGGCCAAGTCCTGTCCAACAGAGGCTACAAGGAGTACAGGCTGGGCGATTACTCCAACTGGCTGCAGAATCGCGTCAACAACAACAAAAACTGGAACAAAATCAGGAGCTGCTTGGTGGACGGCAAGGTGTGTACCGAATTCAACGATAAATTCGCCCGTGATACCGTCGATGAGTTATACCGAGAGCACTTATCGTCGATTCAGGTAAATTTCAATTTGGATCTCCGATGTAATGGAGAAACCCCCTTCCCCCCCCAAATTTCGAATTGATGGTAAGAGTAACTAAAATTTGTCTGGTTGATTGGGTGCAGTCTGGTTGTTGCAAGCCGGCAGATGAGTGCAATTTCGTGTTCGTGAGGCCAACAGAGTGGACAGTGGGCAGTACCAATTCTACGAATCCAGATTGTGGGCTATGGAATAACGAACCTAAGACGCTGTGCTTCAATTGTTCGTCCTGCAAGGCTGGGGTATTGGACAATTTGAAGAGGAACTGGAAGAAAGTGGCGATTATTAATATTGTTGTGCTGGTGTTTCTCATCATCGTTTACTCCATTGGATGTTGCGCCTTCAGGAACAACAAGGAGGAGAATCATTATCCCAGATGGAAATGAAGTCGTTAGTTGATTTTGTATGTCAGTCTTGGATTTTGGTTTTGCCTTTTGCCTTCTGCCTTCTGCCTTGCTTCAGCGGTGTAGGCGTATATTAACTTCCATTATTTAGCTGTTTTATGACTGTTATTGCCCAGTAGTATTATTTGCTGTGATATATGAATAAACTCTACATTCGTGAATTTCGATTCTTTTAAGAAATTAATAATTGGTTTTGATTACTGATTTTGTGTGTTCATTATGGTTGAGAAGTTGATAGCGTAGTGGCGTGCTTGAAACTATTCTCATCTTTGTTTAATCTCACTTTTTGACAATTTTATTTTTTTTAATGGACTTTCTGTTCTACAAGCATGACTATTTATTTATTTATTTATTTTAATTAATGGACTTCCTTTGTTCAACAAGTAGGACAATAATTTATAGGGTCCGCGTTGTTGTTCCCTCGTCACTGTCTGAATTTAATAATTCATAGCAAAAATGTGGTTGTCAATGTTTTTGTGTTCGGGATTCAGATGCCCAACTTCCATTCCCTC

mRNA sequence

GTGTGTGAATGAATGACCAAAAACAAATAGAATTTGAAAAATGAAGTGCAGAATTCTCAAAAACAATTAAAAGGTGAAAAGCTTTCCGTTTGGGAATTGGATTTGGAATTGGAGAGCCGCGTGAGGAACAGCCTGCCTAGAAGCTACATCGGAAGATCCCCGGTTTTAATCAAATTTGTAATAACAGCCGTCGCTTTTGAACTTTCAACCTGACATCACCACCGTCAACATTTCGTCCCCTAAACGCGCCTTCTCAAAACGCTATAAAACCAATCCACACCCATTCCCAAACACAAACACGCATCCTTTTACTTCCCATCCCCTCCCTTTCCTCTCTGTTTTACTGAATCATTTGGGCGTTGGTTCGCAACCATGGTGCGGTTTAGCAATAATCTGGTTGGGATTCTCAATTTCATAGTCTTTTTGCTCTCTATTCCAATCATCGCCGGTGGGATATGGCTCAGCCGACAGGGGACCTCCGACTGTGAGAAATTTCTCGACACGCCGGTTATCGTCATCGGAGTTTTCCTTCTATTGGTCTCTCTCGCGGGTTTCATCGGCGCCTGCTGCCGTGTCACATGGCTTCTCTGGATCTATCTCTTTGTCATGTTCATCCTCATCGTCCTTCTCTTCGTCTTCACCATCTTTGCCTTCGCCGTCACCAACAAAGGCGCCGGCCAAGTCCTGTCCAACAGAGGCTACAAGGAGTACAGGCTGGGCGATTACTCCAACTGGCTGCAGAATCGCGTCAACAACAACAAAAACTGGAACAAAATCAGGAGCTGCTTGGTGGACGGCAAGGTGTGTACCGAATTCAACGATAAATTCGCCCGTGATACCGTCGATGAGTTATACCGAGAGCACTTATCGTCGATTCAGTCTGGTTGTTGCAAGCCGGCAGATGAGTGCAATTTCGTGTTCGTGAGGCCAACAGAGTGGACAGTGGGCAGTACCAATTCTACGAATCCAGATTGTGGGCTATGGAATAACGAACCTAAGACGCTGTGCTTCAATTGTTCGTCCTGCAAGGCTGGGGTATTGGACAATTTGAAGAGGAACTGGAAGAAAGTGGCGATTATTAATATTGTTGTGCTGGTGTTTCTCATCATCGTTTACTCCATTGGATGTTGCGCCTTCAGGAACAACAAGGAGGAGAATCATTATCCCAGATGGAAATGAAGTCGTTAGTTGATTTTGTATGTCAGTCTTGGATTTTGGTTTTGCCTTTTGCCTTCTGCCTTCTGCCTTGCTTCAGCGGTGTAGGCGTATATTAACTTCCATTATTTAGCTGTTTTATGACTGTTATTGCCCAGTAGTATTATTTGCTGTGATATATGAATAAACTCTACATTCGTGAATTTCGATTCTTTTAAGAAATTAATAATTGGTTTTGATTACTGATTTTGTGTGTTCATTATGGTTGAGAAGTTGATAGCGTAGTGGCGTGCTTGAAACTATTCTCATCTTTGTTTAATCTCACTTTTTGACAATTTTATTTTTTTTAATGGACTTTCTGTTCTACAAGCATGACTATTTATTTATTTATTTATTTTAATTAATGGACTTCCTTTGTTCAACAAGTAGGACAATAATTTATAGGGTCCGCGTTGTTGTTCCCTCGTCACTGTCTGAATTTAATAATTCATAGCAAAAATGTGGTTGTCAATGTTTTTGTGTTCGGGATTCAGATGCCCAACTTCCATTCCCTC

Coding sequence (CDS)

ATGGTGCGGTTTAGCAATAATCTGGTTGGGATTCTCAATTTCATAGTCTTTTTGCTCTCTATTCCAATCATCGCCGGTGGGATATGGCTCAGCCGACAGGGGACCTCCGACTGTGAGAAATTTCTCGACACGCCGGTTATCGTCATCGGAGTTTTCCTTCTATTGGTCTCTCTCGCGGGTTTCATCGGCGCCTGCTGCCGTGTCACATGGCTTCTCTGGATCTATCTCTTTGTCATGTTCATCCTCATCGTCCTTCTCTTCGTCTTCACCATCTTTGCCTTCGCCGTCACCAACAAAGGCGCCGGCCAAGTCCTGTCCAACAGAGGCTACAAGGAGTACAGGCTGGGCGATTACTCCAACTGGCTGCAGAATCGCGTCAACAACAACAAAAACTGGAACAAAATCAGGAGCTGCTTGGTGGACGGCAAGGTGTGTACCGAATTCAACGATAAATTCGCCCGTGATACCGTCGATGAGTTATACCGAGAGCACTTATCGTCGATTCAGTCTGGTTGTTGCAAGCCGGCAGATGAGTGCAATTTCGTGTTCGTGAGGCCAACAGAGTGGACAGTGGGCAGTACCAATTCTACGAATCCAGATTGTGGGCTATGGAATAACGAACCTAAGACGCTGTGCTTCAATTGTTCGTCCTGCAAGGCTGGGGTATTGGACAATTTGAAGAGGAACTGGAAGAAAGTGGCGATTATTAATATTGTTGTGCTGGTGTTTCTCATCATCGTTTACTCCATTGGATGTTGCGCCTTCAGGAACAACAAGGAGGAGAATCATTATCCCAGATGGAAATGA

Protein sequence

MVRFSNNLVGILNFIVFLLSIPIIAGGIWLSRQGTSDCEKFLDTPVIVIGVFLLLVSLAGFIGACCRVTWLLWIYLFVMFILIVLLFVFTIFAFAVTNKGAGQVLSNRGYKEYRLGDYSNWLQNRVNNNKNWNKIRSCLVDGKVCTEFNDKFARDTVDELYREHLSSIQSGCCKPADECNFVFVRPTEWTVGSTNSTNPDCGLWNNEPKTLCFNCSSCKAGVLDNLKRNWKKVAIINIVVLVFLIIVYSIGCCAFRNNKEENHYPRWK

Homology

[Close]

BLAST of CmaCh11G004310 vs. ExPASy Swiss-Prot
Match: Q8S8Q6 (Tetraspanin-8 OS=Arabidopsis thaliana OX=3702 GN=TET8 PE=2 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 1.1e-107
Identity = 178/267 (66.67%), Postives = 222/267 (83.15%), Query Frame = 0


Query: 1   MVRFSNNLVGILNFIVFLLSIPIIAGGIWLSRQGTSDCEKFLDTPVIVIGVFLLLVSLAG 60
           M R SNNLVGILNF+VFLLSIPI+AGGIWLS++G+++CE+FLD PVI +GVFL++V++AG
Sbjct: 1   MARCSNNLVGILNFLVFLLSIPILAGGIWLSQKGSTECERFLDKPVIALGVFLMVVAIAG 60

Query: 61  FIGACCRVTWLLWIYLFVMFILIVLLFVFTIFAFAVTNKGAGQVLSNRGYKEYRLGDYSN 120
            IG+CCRVTWLLW+YLFVMF+LI+L+F  T+FAF VTNKGAG+ +  +GYKEY+LGDYS 
Sbjct: 61  LIGSCCRVTWLLWVYLFVMFLLILLVFCITVFAFVVTNKGAGEAIEGKGYKEYKLGDYST 120

Query: 121 WLQNRVNNNKNWNKIRSCLVDGKVCTEFNDKFARDTVDELYREHLSSIQSGCCKPADECN 180
           WLQ RV N KNWNKIRSCLV+ KVC++   KF    V+  Y+EHL+++QSGCCKP+DEC 
Sbjct: 121 WLQKRVENGKNWNKIRSCLVESKVCSKLEAKFVNVPVNSFYKEHLTALQSGCCKPSDECG 180

Query: 181 FVFVRPTEWTVGSTNS-TNPDCGLWNNEPKTLCFNCSSCKAGVLDNLKRNWKKVAIINIV 240
           F +V PT WT  +T + TNPDC  W+N  + LCF+C SCKAG+LDN+K  WKKVAI+NIV
Sbjct: 181 FEYVNPTTWTKNTTGTHTNPDCQTWDNAKEKLCFDCQSCKAGLLDNVKSAWKKVAIVNIV 240

Query: 241 VLVFLIIVYSIGCCAFRNNKEENHYPR 267
            LVFLIIVYS+GCCAFRNNK ++ Y R
Sbjct: 241 FLVFLIIVYSVGCCAFRNNKRDDSYSR 267

[Close]

BLAST of CmaCh11G004310 vs. ExPASy Swiss-Prot
Match: Q9SUD4 (Tetraspanin-7 OS=Arabidopsis thaliana OX=3702 GN=TET7 PE=2 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 3.0e-97
Identity = 157/262 (59.92%), Postives = 213/262 (81.30%), Query Frame = 0


Query: 1   MVRFSNNLVGILNFIVFLLSIPIIAGGIWLSRQGTSDCEKFLDTPVIVIGVFLLLVSLAG 60
           MV+ SNNL+GILNF  FLLSIPI++ GIWL +   ++CE+FLD P++V+G+FL+ VS+AG
Sbjct: 1   MVQCSNNLLGILNFFTFLLSIPILSAGIWLGKNAATECERFLDKPMVVLGIFLMFVSIAG 60

Query: 61  FIGACCRVTWLLWIYLFVMFILIVLLFVFTIFAFAVTNKGAGQVLSNRGYKEYRLGDYSN 120
            +GACCRV+ LLW+YLF MF+LI+L F FTIFAFAVTN+GAG+V+S+RGYKEY + DYSN
Sbjct: 61  LVGACCRVSCLLWLYLFAMFLLILLGFCFTIFAFAVTNRGAGEVISDRGYKEYHVADYSN 120

Query: 121 WLQNRVNNNKNWNKIRSCLVDGKVCTEFNDKFARDTVDELYREHLSSIQSGCCKPADECN 180
           WLQ RVNN KNW +IRSCL+   VC+ +  ++A   V++ Y+ +L+++QSGCCKP+++CN
Sbjct: 121 WLQKRVNNAKNWERIRSCLMYSDVCSTYRTRYASINVEDFYKSNLNALQSGCCKPSNDCN 180

Query: 181 FVFVRPTEWTVGSTNSTNPDCGLWNNEPKTLCFNCSSCKAGVLDNLKRNWKKVAIINIVV 240
           F +V PT WT       N DC +W+N+P TLC++C +CKAG+LDN+K +WKKVA +NIV 
Sbjct: 181 FTYVNPTTWTKTPGPYKNEDCNVWDNKPGTLCYDCEACKAGLLDNIKNSWKKVAKVNIVF 240

Query: 241 LVFLIIVYSIGCCAFRNNKEEN 263
           L+FLIIVYS+GCCAFRNN++ +
Sbjct: 241 LIFLIIVYSVGCCAFRNNRKRS 262

[Close]

BLAST of CmaCh11G004310 vs. ExPASy Swiss-Prot
Match: Q9M0B7 (Tetraspanin-9 OS=Arabidopsis thaliana OX=3702 GN=TET9 PE=2 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 3.8e-92
Identity = 152/263 (57.79%), Postives = 202/263 (76.81%), Query Frame = 0


Query: 1   MVRFSNNLVGILNFIVFLLSIPIIAGGIWLSRQGTSDCEKFLDTPVIVIGVFLLLVSLAG 60
           MVRFSN+LVGILNF VFLLS+PI++ GIWLS + T+ CE+FLD P+I +GVFL+++++AG
Sbjct: 1   MVRFSNSLVGILNFFVFLLSVPILSTGIWLSLKATTQCERFLDKPMIALGVFLMIIAIAG 60

Query: 61  FIGACCRVTWLLWIYLFVMFILIVLLFVFTIFAFAVTNKGAGQVLSNRGYKEYRLGDYSN 120
            +G+CCRVTWLLW YLFVMF LI+++  FTIFAF VT+KG+G+ +  + YKEYRL  YS+
Sbjct: 61  VVGSCCRVTWLLWSYLFVMFFLILIVLCFTIFAFVVTSKGSGETIQGKAYKEYRLEAYSD 120

Query: 121 WLQNRVNNNKNWNKIRSCLVDGKVCTEFNDKFARDTVDELYREHLSSIQSGCCKPADECN 180
           WLQ RVNN K+WN IRSCL + K C       A  TV + Y+E L++ +SGCCKP+++C+
Sbjct: 121 WLQRRVNNAKHWNSIRSCLYESKFCYNLELVTANHTVSDFYKEDLTAFESGCCKPSNDCD 180

Query: 181 FVFVRPTEWTVGSTNSTNPDCGLWNNEPKTLCFNCSSCKAGVLDNLKRNWKKVAIINIVV 240
           F ++  T W   S    N DC LW+NE   LC+NC +CKAG LDNLK  WK+VAI+NI+ 
Sbjct: 181 FTYITSTTWNKTSGTHKNSDCQLWDNEKHKLCYNCKACKAGFLDNLKAAWKRVAIVNIIF 240

Query: 241 LVFLIIVYSIGCCAFRNNKEENH 264
           LV L++VY++GCCAFRNNKE+ +
Sbjct: 241 LVLLVVVYAMGCCAFRNNKEDRY 263

[Close]

BLAST of CmaCh11G004310 vs. ExPASy Swiss-Prot
Match: Q9M1E7 (Tetraspanin-3 OS=Arabidopsis thaliana OX=3702 GN=TET3 PE=1 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 3.2e-70
Identity = 132/262 (50.38%), Postives = 183/262 (69.85%), Query Frame = 0


Query: 2   VRFSNNLVGILNFIVFLLSIPIIAGGIWL-SRQGTSDCEKFLDTPVIVIGVFLLLVSLAG 61
           +R SN+L+G++NF+ FLLSIPI+ GGIWL SR  ++DC +FL  P+IVIG+ +++VSLAG
Sbjct: 1   MRTSNHLIGLVNFLTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIVIGISIMVVSLAG 60

Query: 62  FIGACCRVTWLLWIYLFVMFILIVLLFVFTIFAFAVTNKGAGQVLSNRGYKEYRLGDYSN 121
           F GAC R  +L+W+YL VM ++I  L  F IFA+AVT+KG+G+ + NRGY +Y L DYS 
Sbjct: 61  FAGACYRNKFLMWLYLVVMLLIIAALIGFIIFAYAVTDKGSGRTVLNRGYLDYYLEDYSG 120

Query: 122 WLQNRVNNNKNWNKIRSCLVDGKVCTEFNDKF--ARDTVDELYREHLSSIQSGCCKPADE 181
           WL++RV+++  W KI SCL D   C +    F    +T D  +   LS ++SGCCKP  +
Sbjct: 121 WLKDRVSDDSYWGKISSCLRDSGACRKIGRNFNGVPETADMFFLRRLSPVESGCCKPPTD 180

Query: 182 CNFVFVRPTEW-TVGSTNSTNPDCGLWNNEPKTLCFNCSSCKAGVLDNLKRNWKKVAIIN 241
           C F +V  T W T G     N DC +W+N+   LC+ CSSCKAGVL +LK++W+KV++IN
Sbjct: 181 CGFSYVNETGWDTRGGMIGPNQDCMVWSNDQSMLCYQCSSCKAGVLGSLKKSWRKVSVIN 240

Query: 242 IVVLVFLIIVYSIGCCAFRNNK 260
           IVVL+ L+I Y I   A+RN K
Sbjct: 241 IVVLIILVIFYVIAYAAYRNVK 262

[Close]

BLAST of CmaCh11G004310 vs. ExPASy Swiss-Prot
Match: Q9LSS4 (Tetraspanin-4 OS=Arabidopsis thaliana OX=3702 GN=TET4 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.0e-68
Identity = 126/262 (48.09%), Postives = 179/262 (68.32%), Query Frame = 0


Query: 2   VRFSNNLVGILNFIVFLLSIPIIAGGIWL-SRQGTSDCEKFLDTPVIVIGVFLLLVSLAG 61
           +R  +NL+G++NF  FLLSIPI+ GGIWL SR  ++DC +FL  P+I+IG+ ++++SLAG
Sbjct: 1   MRSRSNLIGLINFFTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIIIGISIMVISLAG 60

Query: 62  FIGACCRVTWLLWIYLFVMFILIVLLFVFTIFAFAVTNKGAGQVLSNRGYKEYRLGDYSN 121
             GAC +  +L+W+YLF MF +I  L  FTIFA+ VT+KG+G+ + NR Y +Y L DYS 
Sbjct: 61  IAGACYQNKFLMWLYLFTMFFVIAALIGFTIFAYVVTDKGSGRFVMNRRYLDYYLNDYSG 120

Query: 122 WLQNRVNNNKNWNKIRSCLVDGKVCTEFNDKF--ARDTVDELYREHLSSIQSGCCKPADE 181
           WL++RV +N  W  I SC+ D  VC +         +T    Y  +LS ++SGCCKP  +
Sbjct: 121 WLKDRVTDNGYWRDIGSCVRDSGVCKKIGRDLNGVPETAHMFYFRNLSPVESGCCKPPTD 180

Query: 182 CNFVFVRPTEWTVGSTN-STNPDCGLWNNEPKTLCFNCSSCKAGVLDNLKRNWKKVAIIN 241
           C + +V  T W  G      NPDC LWNN+ + LC+ CSSCKAGVL +LK++W+KV++IN
Sbjct: 181 CGYTYVNETVWIPGGEMVGPNPDCMLWNNDQRLLCYQCSSCKAGVLGSLKKSWRKVSVIN 240

Query: 242 IVVLVFLIIVYSIGCCAFRNNK 260
           IVV++ L+I Y I C A++N K
Sbjct: 241 IVVVIILVIFYVIACAAYQNVK 262

[Close]

BLAST of CmaCh11G004310 vs. TAIR 10
Match: AT2G23810.1 (tetraspanin8 )

HSP 1 Score: 391.0 bits (1003), Expect = 7.9e-109
Identity = 178/267 (66.67%), Postives = 222/267 (83.15%), Query Frame = 0


Query: 1   MVRFSNNLVGILNFIVFLLSIPIIAGGIWLSRQGTSDCEKFLDTPVIVIGVFLLLVSLAG 60
           M R SNNLVGILNF+VFLLSIPI+AGGIWLS++G+++CE+FLD PVI +GVFL++V++AG
Sbjct: 1   MARCSNNLVGILNFLVFLLSIPILAGGIWLSQKGSTECERFLDKPVIALGVFLMVVAIAG 60

Query: 61  FIGACCRVTWLLWIYLFVMFILIVLLFVFTIFAFAVTNKGAGQVLSNRGYKEYRLGDYSN 120
            IG+CCRVTWLLW+YLFVMF+LI+L+F  T+FAF VTNKGAG+ +  +GYKEY+LGDYS 
Sbjct: 61  LIGSCCRVTWLLWVYLFVMFLLILLVFCITVFAFVVTNKGAGEAIEGKGYKEYKLGDYST 120

Query: 121 WLQNRVNNNKNWNKIRSCLVDGKVCTEFNDKFARDTVDELYREHLSSIQSGCCKPADECN 180
           WLQ RV N KNWNKIRSCLV+ KVC++   KF    V+  Y+EHL+++QSGCCKP+DEC 
Sbjct: 121 WLQKRVENGKNWNKIRSCLVESKVCSKLEAKFVNVPVNSFYKEHLTALQSGCCKPSDECG 180

Query: 181 FVFVRPTEWTVGSTNS-TNPDCGLWNNEPKTLCFNCSSCKAGVLDNLKRNWKKVAIINIV 240
           F +V PT WT  +T + TNPDC  W+N  + LCF+C SCKAG+LDN+K  WKKVAI+NIV
Sbjct: 181 FEYVNPTTWTKNTTGTHTNPDCQTWDNAKEKLCFDCQSCKAGLLDNVKSAWKKVAIVNIV 240

Query: 241 VLVFLIIVYSIGCCAFRNNKEENHYPR 267
            LVFLIIVYS+GCCAFRNNK ++ Y R
Sbjct: 241 FLVFLIIVYSVGCCAFRNNKRDDSYSR 267

[Close]

BLAST of CmaCh11G004310 vs. TAIR 10
Match: AT4G28050.1 (tetraspanin7 )

HSP 1 Score: 356.3 bits (913), Expect = 2.2e-98
Identity = 157/262 (59.92%), Postives = 213/262 (81.30%), Query Frame = 0


Query: 1   MVRFSNNLVGILNFIVFLLSIPIIAGGIWLSRQGTSDCEKFLDTPVIVIGVFLLLVSLAG 60
           MV+ SNNL+GILNF  FLLSIPI++ GIWL +   ++CE+FLD P++V+G+FL+ VS+AG
Sbjct: 1   MVQCSNNLLGILNFFTFLLSIPILSAGIWLGKNAATECERFLDKPMVVLGIFLMFVSIAG 60

Query: 61  FIGACCRVTWLLWIYLFVMFILIVLLFVFTIFAFAVTNKGAGQVLSNRGYKEYRLGDYSN 120
            +GACCRV+ LLW+YLF MF+LI+L F FTIFAFAVTN+GAG+V+S+RGYKEY + DYSN
Sbjct: 61  LVGACCRVSCLLWLYLFAMFLLILLGFCFTIFAFAVTNRGAGEVISDRGYKEYHVADYSN 120

Query: 121 WLQNRVNNNKNWNKIRSCLVDGKVCTEFNDKFARDTVDELYREHLSSIQSGCCKPADECN 180
           WLQ RVNN KNW +IRSCL+   VC+ +  ++A   V++ Y+ +L+++QSGCCKP+++CN
Sbjct: 121 WLQKRVNNAKNWERIRSCLMYSDVCSTYRTRYASINVEDFYKSNLNALQSGCCKPSNDCN 180

Query: 181 FVFVRPTEWTVGSTNSTNPDCGLWNNEPKTLCFNCSSCKAGVLDNLKRNWKKVAIINIVV 240
           F +V PT WT       N DC +W+N+P TLC++C +CKAG+LDN+K +WKKVA +NIV 
Sbjct: 181 FTYVNPTTWTKTPGPYKNEDCNVWDNKPGTLCYDCEACKAGLLDNIKNSWKKVAKVNIVF 240

Query: 241 LVFLIIVYSIGCCAFRNNKEEN 263
           L+FLIIVYS+GCCAFRNN++ +
Sbjct: 241 LIFLIIVYSVGCCAFRNNRKRS 262

[Close]

BLAST of CmaCh11G004310 vs. TAIR 10
Match: AT4G30430.1 (tetraspanin9 )

HSP 1 Score: 339.3 bits (869), Expect = 2.7e-93
Identity = 152/263 (57.79%), Postives = 202/263 (76.81%), Query Frame = 0


Query: 1   MVRFSNNLVGILNFIVFLLSIPIIAGGIWLSRQGTSDCEKFLDTPVIVIGVFLLLVSLAG 60
           MVRFSN+LVGILNF VFLLS+PI++ GIWLS + T+ CE+FLD P+I +GVFL+++++AG
Sbjct: 1   MVRFSNSLVGILNFFVFLLSVPILSTGIWLSLKATTQCERFLDKPMIALGVFLMIIAIAG 60

Query: 61  FIGACCRVTWLLWIYLFVMFILIVLLFVFTIFAFAVTNKGAGQVLSNRGYKEYRLGDYSN 120
            +G+CCRVTWLLW YLFVMF LI+++  FTIFAF VT+KG+G+ +  + YKEYRL  YS+
Sbjct: 61  VVGSCCRVTWLLWSYLFVMFFLILIVLCFTIFAFVVTSKGSGETIQGKAYKEYRLEAYSD 120

Query: 121 WLQNRVNNNKNWNKIRSCLVDGKVCTEFNDKFARDTVDELYREHLSSIQSGCCKPADECN 180
           WLQ RVNN K+WN IRSCL + K C       A  TV + Y+E L++ +SGCCKP+++C+
Sbjct: 121 WLQRRVNNAKHWNSIRSCLYESKFCYNLELVTANHTVSDFYKEDLTAFESGCCKPSNDCD 180

Query: 181 FVFVRPTEWTVGSTNSTNPDCGLWNNEPKTLCFNCSSCKAGVLDNLKRNWKKVAIINIVV 240
           F ++  T W   S    N DC LW+NE   LC+NC +CKAG LDNLK  WK+VAI+NI+ 
Sbjct: 181 FTYITSTTWNKTSGTHKNSDCQLWDNEKHKLCYNCKACKAGFLDNLKAAWKRVAIVNIIF 240

Query: 241 LVFLIIVYSIGCCAFRNNKEENH 264
           LV L++VY++GCCAFRNNKE+ +
Sbjct: 241 LVLLVVVYAMGCCAFRNNKEDRY 263

[Close]

BLAST of CmaCh11G004310 vs. TAIR 10
Match: AT3G45600.1 (tetraspanin3 )

HSP 1 Score: 266.5 bits (680), Expect = 2.2e-71
Identity = 132/262 (50.38%), Postives = 183/262 (69.85%), Query Frame = 0


Query: 2   VRFSNNLVGILNFIVFLLSIPIIAGGIWL-SRQGTSDCEKFLDTPVIVIGVFLLLVSLAG 61
           +R SN+L+G++NF+ FLLSIPI+ GGIWL SR  ++DC +FL  P+IVIG+ +++VSLAG
Sbjct: 1   MRTSNHLIGLVNFLTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIVIGISIMVVSLAG 60

Query: 62  FIGACCRVTWLLWIYLFVMFILIVLLFVFTIFAFAVTNKGAGQVLSNRGYKEYRLGDYSN 121
           F GAC R  +L+W+YL VM ++I  L  F IFA+AVT+KG+G+ + NRGY +Y L DYS 
Sbjct: 61  FAGACYRNKFLMWLYLVVMLLIIAALIGFIIFAYAVTDKGSGRTVLNRGYLDYYLEDYSG 120

Query: 122 WLQNRVNNNKNWNKIRSCLVDGKVCTEFNDKF--ARDTVDELYREHLSSIQSGCCKPADE 181
           WL++RV+++  W KI SCL D   C +    F    +T D  +   LS ++SGCCKP  +
Sbjct: 121 WLKDRVSDDSYWGKISSCLRDSGACRKIGRNFNGVPETADMFFLRRLSPVESGCCKPPTD 180

Query: 182 CNFVFVRPTEW-TVGSTNSTNPDCGLWNNEPKTLCFNCSSCKAGVLDNLKRNWKKVAIIN 241
           C F +V  T W T G     N DC +W+N+   LC+ CSSCKAGVL +LK++W+KV++IN
Sbjct: 181 CGFSYVNETGWDTRGGMIGPNQDCMVWSNDQSMLCYQCSSCKAGVLGSLKKSWRKVSVIN 240

Query: 242 IVVLVFLIIVYSIGCCAFRNNK 260
           IVVL+ L+I Y I   A+RN K
Sbjct: 241 IVVLIILVIFYVIAYAAYRNVK 262

[Close]

BLAST of CmaCh11G004310 vs. TAIR 10
Match: AT5G60220.1 (tetraspanin4 )

HSP 1 Score: 261.5 bits (667), Expect = 7.2e-70
Identity = 126/262 (48.09%), Postives = 179/262 (68.32%), Query Frame = 0


Query: 2   VRFSNNLVGILNFIVFLLSIPIIAGGIWL-SRQGTSDCEKFLDTPVIVIGVFLLLVSLAG 61
           +R  +NL+G++NF  FLLSIPI+ GGIWL SR  ++DC +FL  P+I+IG+ ++++SLAG
Sbjct: 1   MRSRSNLIGLINFFTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIIIGISIMVISLAG 60

Query: 62  FIGACCRVTWLLWIYLFVMFILIVLLFVFTIFAFAVTNKGAGQVLSNRGYKEYRLGDYSN 121
             GAC +  +L+W+YLF MF +I  L  FTIFA+ VT+KG+G+ + NR Y +Y L DYS 
Sbjct: 61  IAGACYQNKFLMWLYLFTMFFVIAALIGFTIFAYVVTDKGSGRFVMNRRYLDYYLNDYSG 120

Query: 122 WLQNRVNNNKNWNKIRSCLVDGKVCTEFNDKF--ARDTVDELYREHLSSIQSGCCKPADE 181
           WL++RV +N  W  I SC+ D  VC +         +T    Y  +LS ++SGCCKP  +
Sbjct: 121 WLKDRVTDNGYWRDIGSCVRDSGVCKKIGRDLNGVPETAHMFYFRNLSPVESGCCKPPTD 180

Query: 182 CNFVFVRPTEWTVGSTN-STNPDCGLWNNEPKTLCFNCSSCKAGVLDNLKRNWKKVAIIN 241
           C + +V  T W  G      NPDC LWNN+ + LC+ CSSCKAGVL +LK++W+KV++IN
Sbjct: 181 CGYTYVNETVWIPGGEMVGPNPDCMLWNNDQRLLCYQCSSCKAGVLGSLKKSWRKVSVIN 240

Query: 242 IVVLVFLIIVYSIGCCAFRNNK 260
           IVV++ L+I Y I C A++N K
Sbjct: 241 IVVVIILVIFYVIACAAYQNVK 262

The following BLAST results are available for this feature:

BLAST of CmaCh11G004310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8Q6	1.1e-107	66.67	Tetraspanin-8 OS=Arabidopsis thaliana OX=3702 GN=TET8 PE=2 SV=1	[more]
Q9SUD4	3.0e-97	59.92	Tetraspanin-7 OS=Arabidopsis thaliana OX=3702 GN=TET7 PE=2 SV=1	[more]
Q9M0B7	3.8e-92	57.79	Tetraspanin-9 OS=Arabidopsis thaliana OX=3702 GN=TET9 PE=2 SV=1	[more]
Q9M1E7	3.2e-70	50.38	Tetraspanin-3 OS=Arabidopsis thaliana OX=3702 GN=TET3 PE=1 SV=1	[more]
Q9LSS4	1.0e-68	48.09	Tetraspanin-4 OS=Arabidopsis thaliana OX=3702 GN=TET4 PE=3 SV=1	[more]

BLAST of CmaCh11G004310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G23810.1	7.9e-109	66.67	tetraspanin8	[more]
AT4G28050.1	2.2e-98	59.92	tetraspanin7	[more]
AT4G30430.1	2.7e-93	57.79	tetraspanin9	[more]
AT3G45600.1	2.2e-71	50.38	tetraspanin3	[more]
AT5G60220.1	7.2e-70	48.09	tetraspanin4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00259	TMFOUR	coord: 7..30 score: 28.72 coord: 66..94 score: 15.63 coord: 39..65 score: 24.35
None	No IPR available	PANTHER	PTHR32191:SF73	BNAA09G41810D PROTEIN	coord: 1..266
IPR018499	Tetraspanin/Peripherin	PFAM	PF00335	Tetraspanin	coord: 7..254 e-value: 2.5E-36 score: 125.5
IPR044991	Tetraspani, plant	PANTHER	PTHR32191	TETRASPANIN-8-RELATED	coord: 1..266

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G004310.1	CmaCh11G004310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009506	plasmodesma