CmaCh11G004190 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G004190
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptiontransaldolase-like
LocationCma_Chr11: 2060520 .. 2063089 (+)
RNA-Seq ExpressionCmaCh11G004190
SyntenyCmaCh11G004190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATCGCGCCAGATGATCATAGATTTTTAACTGGGTCAGTTCTAATGCTTTGATCTTCCCAATTAAAGTAATCAATCTAAGTTTTACTTTCAAGAACAAAATCCCCCCATGGAAGAAAAAAAAAATTATGATTCAGTTCATCTAGTCGATTCCAGCAACTTGTTGATCTCAATCTGATAGGGTCAACAGACGATTTCTGATATTTCTTCCGTTCCCACATTGATTGAGATTGTTTCGAGAAACAAAAAGAACTAGATGATTAGGTCCAGGTCATAAATTCTAGCGGCTGGTTGGATAGGAATTGAACTGAAGATGATACAGTTAGACATGTTTCTCCTGAAATAATTTTAAATACAGATCAAGTTTAGTCCTATCTGCAAAAATTATGTACATCTGAAATCCAAATATTAGAATCTCTGTCTATAGATTGAGTGTATTGCTTGTTATATCGTATCATCATACAATCAAATACGCAACTACGTTTATACATGCCGTGATATGTGATATTTGCCTATAAACATGTAGTGCAAAATTTCCAGCAAAATTCGGAAAAACCTTTATGTTGTAATGTCCAGCGCGCAGGTACGTCCGTTTAGTCATCGTTATAATAAAGTAATGTGTCCGTGAAAGGTATGATTTCAGTCTTAACCATCAATATTTCTCAGGCTGCGCTGGCTTCCTTCTGCAAGCTGCGTTATTGCTTGCTCACAAACTGGGTTAAGAAAATCAATTCTTCATGACCTCCCTGAACGGCAAGGCCAAAGCCATTATTATGACAAGATTTGCCGCCCGATCATGCTTGTCCAAAGTATGTTTTCCATCGTTAATCTCTCTACTCCATAGACATTACATCTCTTATTGCATGCCCATTTACCATCTTTGATCATGAATTGTCATCAAAGTTCTGGAAGAAAATTCTGATTTATGGCGAATCATTGTACATATGGGTAAATATAGTTGCTTTCTATGGTGTCTTCATATAAGACGCGTTTGAATCAAAGAATAGAATTTGCATCTGATATGTCCATAATCACATATAATGAGGTACATTATTAGTTGAAGTGCATTATTCTTAAGTAATCTGTAAAATATTCGTCATTCCCAAATTTCATTGCGAATGTTCAAGATGGTTAGATGATAATAACCATGACAGTCGATCGACTTGTTAAGTCCAAGTTGGTCGGCCCAGAACTCAGACTCCAAAGGAATTTGATAGTAACTGAAGTAGTTCGGGGTGCAGTAGGAGAAGACAGAATGAGTGAAAATTATGAGGCCCTTCTAGAGATTTCTATCGTGTTTTAATATTCGGAGTATTTAGGTTGTTGTAGGCATAGGCAATAAAGTGAAAAGGAAAGGGATCCTGAAGACTCTGTGGAGATGAAAATGAAGAGAGGTACTGAAAAGAGAAAAGTTTGACTTGTAGATGTTTTGGGGAAGGCAGCTTTATGGGCGGCTGTTGCTCAGACGCATGTTTCCGTTTCAGCTTTCCTTGTTTTCCTTCTCTTACCCTCTTGGTTTGCTTCGATTTAGCTTTCCCATTGGCAGCTTTTGTTGCCTTTTTTAAGGGTCGTGCTCTGCCTTTTTCAACTTTAGTTTCCTCTGCCTTTACACCCCCTGAGAATCAGAATCTCTTACATAAGAACAGAAAGCGCACCCACAGTCACTTTTAATTCCACCCCTTCCACACAAACTTCACCACTAATAAATGTGTGTTGGTATTGATTATGCCGACAAGGGGTTGGTTGTTATTGATTGTTGAGGACGAGGAAGGAAGTTCCACAGCCCCACACAGACTTCACCACTAGATAAAGCATGTCTGTCTCTTTTGCAAATGTATCTAAAAGTGTATACCATTGATGACCTTTTTGAAGCTTGTATTAGAAGTATAATAGATTATTGTTGATTAATGTTTAGAAGAAAAGTTGAATCATTTAGTCATTTTGAGTATTAACAATGTCATCATCAACTCAAGGAGGGAAGTTGGATTGTAAAGGAAGGCCTTTTTGGTGGCTTTTTGTATTTGGTCATCTCAAAAGCAACACAACTTCGCTTTATTCTAAAACTATAGAAAGGTAGTGGTGGGGATTGGATTGGATTGGATTGGAGAGAAAGTCCACATGCTTTGGATGCAAGAAGCTACCTAAACTTTTTAAAGGCGATGCTTCTCAAATTTCCCTCAAACTTTGCAAAAAGTACTTTTATTCCCTTCCCTATCTTGAAGTTTGACCTTCATCCAACAAAAATTACCATATTGCCCATCCATATTGCTAATTCTTTGCCAGAAATCAAGTGGGGTTAAGCTTTTTTGTGGCGTAGAAGAGTTTAGGTCTGATTGTTGGGTCCCGATCATAAATCTTGGAGGTCAATCTTTTTGCTATCAGCTATCACCTTTGGAAAGCCCTGAATCATAAATTTGAAGAGTTAGCTGTGTCTTTCGGTTCCTGTTTATAAAAAAGAAGAAAAACATGAAGTTAATATTTATTATGTATTTCTATTGATTGTTTTTTTTTTTTTTTATATGAGGTTTTTGTTATTTTGTTGCGTGCAGATAGACTCTTCTTTCTAA

mRNA sequence

ATGGAAATCGCGCCAGATGATCATAGATTTTTAACTGGGCTGCGCTGGCTTCCTTCTGCAAGCTGCGTTATTGCTTGCTCACAAACTGGGTTAAGAAAATCAATTCTTCATGACCTCCCTGAACGGCAAGGCCAAAGCCATTATTATGACAAGATTTGCCGCCCGATCATGCTTGTCCAAAATGTTTTGGGGAAGGCAGCTTTATGGGCGGCTGTTGCTCAGACGCATATAGACTCTTCTTTCTAA

Coding sequence (CDS)

ATGGAAATCGCGCCAGATGATCATAGATTTTTAACTGGGCTGCGCTGGCTTCCTTCTGCAAGCTGCGTTATTGCTTGCTCACAAACTGGGTTAAGAAAATCAATTCTTCATGACCTCCCTGAACGGCAAGGCCAAAGCCATTATTATGACAAGATTTGCCGCCCGATCATGCTTGTCCAAAATGTTTTGGGGAAGGCAGCTTTATGGGCGGCTGTTGCTCAGACGCATATAGACTCTTCTTTCTAA

Protein sequence

MEIAPDDHRFLTGLRWLPSASCVIACSQTGLRKSILHDLPERQGQSHYYDKICRPIMLVQNVLGKAALWAAVAQTHIDSSF
Homology
[Close]
BLAST of CmaCh11G004190 vs. TAIR 10
Match: AT5G13420.1 (Aldolase-type TIM barrel family protein )

HSP 1 Score: 42.0 bits (97), Expect = 2.7e-04
Identity = 20/47 (42.55%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 15 RWLPSASCVIACSQTG-----LRKSILHDLPERQGQSHYYDKICRPI 57
          R +PS S  + CS +G      +++ LHDL E++GQS +YD +CRP+
Sbjct: 53 RSIPSLS--VRCSVSGGNGTAGKRTTLHDLYEKEGQSPWYDNLCRPV 97

The following BLAST results are available for this feature:
BLAST of CmaCh11G004190 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh11G004190 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G13420.12.7e-0442.55Aldolase-type TIM barrel family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G004190.1CmaCh11G004190.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0006098 pentose-phosphate shunt
cellular_component GO:0005737 cytoplasm
molecular_function GO:0004801 transaldolase activity