CmaCh11G004160 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G004160
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionprotein GLUTAMINE DUMPER 3-like
LocationCma_Chr11: 2042084 .. 2042602 (-)
RNA-Seq ExpressionCmaCh11G004160
SyntenyCmaCh11G004160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCCAGCAGAGAGCCCTTCAACGTGTTGCCGCACTCAGCAGCGCCGGCGGCTAACCTACAGCAACAACAGCACTCCCCTTGGCATTCCCCTGTCCCCTACTTGTTCGGTGGTTTGGCTGCGATGTTAGGACTCATCGCTTTTGCGCTTCTAATCCTCGCTTGCTCATACTGGAAACTTTCTGGCTATCTCGACAGTGGTGACGCTAACAACCGGGAGCCCGACCTGGAGGCCGGCGACGACACCCGGAAACCCTCCCCTGTTTTTGAAGAGAAACTCTTGGTTATTATGGCCGGTGAAATCAAGCCCACATATTTAGCTACTCCCATGTCAAGCAGGTCCTCTTCTTTTGGGGATACGAAAAGCAATAGTAGTAGCAGCGCTACGGCCACCGACGAGAAAGATGAAAAATCAGTGGCCGTAACGGAGACGGTGAAACAGAGCAGTGGAGAAGAGGAGGTGCAGAGTACAGAAAACAGAGAAACTCCTGAATCTTCAGATCAGACGACCCATTAA

mRNA sequence

ATGGCGGCCAGCAGAGAGCCCTTCAACGTGTTGCCGCACTCAGCAGCGCCGGCGGCTAACCTACAGCAACAACAGCACTCCCCTTGGCATTCCCCTGTCCCCTACTTGTTCGGTGGTTTGGCTGCGATGTTAGGACTCATCGCTTTTGCGCTTCTAATCCTCGCTTGCTCATACTGGAAACTTTCTGGCTATCTCGACAGTGGTGACGCTAACAACCGGGAGCCCGACCTGGAGGCCGGCGACGACACCCGGAAACCCTCCCCTGTTTTTGAAGAGAAACTCTTGGTTATTATGGCCGGTGAAATCAAGCCCACATATTTAGCTACTCCCATGTCAAGCAGGTCCTCTTCTTTTGGGGATACGAAAAGCAATAGTAGTAGCAGCGCTACGGCCACCGACGAGAAAGATGAAAAATCAGTGGCCGTAACGGAGACGGTGAAACAGAGCAGTGGAGAAGAGGAGGTGCAGAGTACAGAAAACAGAGAAACTCCTGAATCTTCAGATCAGACGACCCATTAA

Coding sequence (CDS)

ATGGCGGCCAGCAGAGAGCCCTTCAACGTGTTGCCGCACTCAGCAGCGCCGGCGGCTAACCTACAGCAACAACAGCACTCCCCTTGGCATTCCCCTGTCCCCTACTTGTTCGGTGGTTTGGCTGCGATGTTAGGACTCATCGCTTTTGCGCTTCTAATCCTCGCTTGCTCATACTGGAAACTTTCTGGCTATCTCGACAGTGGTGACGCTAACAACCGGGAGCCCGACCTGGAGGCCGGCGACGACACCCGGAAACCCTCCCCTGTTTTTGAAGAGAAACTCTTGGTTATTATGGCCGGTGAAATCAAGCCCACATATTTAGCTACTCCCATGTCAAGCAGGTCCTCTTCTTTTGGGGATACGAAAAGCAATAGTAGTAGCAGCGCTACGGCCACCGACGAGAAAGATGAAAAATCAGTGGCCGTAACGGAGACGGTGAAACAGAGCAGTGGAGAAGAGGAGGTGCAGAGTACAGAAAACAGAGAAACTCCTGAATCTTCAGATCAGACGACCCATTAA

Protein sequence

MAASREPFNVLPHSAAPAANLQQQQHSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGYLDSGDANNREPDLEAGDDTRKPSPVFEEKLLVIMAGEIKPTYLATPMSSRSSSFGDTKSNSSSSATATDEKDEKSVAVTETVKQSSGEEEVQSTENRETPESSDQTTH
Homology
[Close]
BLAST of CmaCh11G004160 vs. ExPASy Swiss-Prot
Match: Q9FHH5 (Protein GLUTAMINE DUMPER 3 OS=Arabidopsis thaliana OX=3702 GN=GDU3 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.0e-26
Identity = 74/131 (56.49%), Postives = 83/131 (63.36%), Query Frame = 0 

Query: 26  HSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGYLDSGDANNREPDLEAGD---D 85
           HSPWHSPVPYLFGGLAAMLGLIAFALLILACSYW+LSGYLD  +  +RE DLE GD   D
Sbjct: 25  HSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSGYLDGEENQSRERDLEVGDVKPD 84

Query: 86  TRKPSPV-FEEKLLVIMAGEIKPTYLATPMSSRSSSFGDTKSNSSSSATATDEKDEKSVA 145
                PV   EK LVIMAG +KPTYLATP           K+ +       D+  E S  
Sbjct: 85  KTAVKPVALPEKFLVIMAGNVKPTYLATP---------SVKTCTCDDDDDEDDDVEGSDQ 144

Query: 146 VTETVKQSSGE 153
           V     +S+GE
Sbjct: 145 VVPRSSESNGE 146

[Close]
BLAST of CmaCh11G004160 vs. ExPASy Swiss-Prot
Match: Q9SW07 (Protein GLUTAMINE DUMPER 2 OS=Arabidopsis thaliana OX=3702 GN=GDU2 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-22
Identity = 61/104 (58.65%), Postives = 70/104 (67.31%), Query Frame = 0 

Query: 26  HSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGYLDSGDANNREPDLEAGDDTRK 85
           HSPWHSPVPYLFGGLAAML LI  ALLILACSYW+LSG        + E DLEAGDD + 
Sbjct: 25  HSPWHSPVPYLFGGLAAMLALICVALLILACSYWRLSG--------SAERDLEAGDDAKP 84

Query: 86  PSPV-------FEEKLLVIMAGEIKPTYLATP--MSSRSSSFGD 121
            +           EK LVIMAG+++PTYLATP   S +S + GD
Sbjct: 85  DNDTNKTKHTEMPEKFLVIMAGDVRPTYLATPATRSEQSCTCGD 120

[Close]
BLAST of CmaCh11G004160 vs. ExPASy Swiss-Prot
Match: Q8S8A0 (Protein GLUTAMINE DUMPER 4 OS=Arabidopsis thaliana OX=3702 GN=GDU4 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.6e-21
Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = 0 

Query: 27  SPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLS-GYLDSGDANNREPDLEAGDDTRK 86
           SPWHSPVPYLFGGLAAMLGLIAFALLILACSYW+LS    DSG+  + E +  +G   + 
Sbjct: 31  SPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSTSGDDSGERVDEEKESRSG--VKA 90

Query: 87  PSPVFEEKLLVIMAGEIKPTYLATPMSSR 115
            S   EEK+LVIMAG+  P +LATP +++
Sbjct: 91  ASAACEEKVLVIMAGDDLPRFLATPAANK 117

[Close]
BLAST of CmaCh11G004160 vs. ExPASy Swiss-Prot
Match: Q3E965 (Protein GLUTAMINE DUMPER 5 OS=Arabidopsis thaliana OX=3702 GN=GDU5 PE=2 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 8.6e-21
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = 0 

Query: 21  LQQQQHSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGYLDSGDANNREPDLEAG 80
           ++ Q  SPW +PVPYLFGGLAAMLGLIAFALL+LACSYW+L     S    + E   E+G
Sbjct: 20  VESQTRSPWRTPVPYLFGGLAAMLGLIAFALLLLACSYWRL-----SRQTEDEEKQTESG 79

Query: 81  DDTRKPSPVFEEKLLVIMAGEIKPTYLATPMSSR 115
           +  +  +  FEEK+LVIMAG+  PT+LATP++++
Sbjct: 80  E--KVVAKAFEEKILVIMAGQNNPTFLATPVAAK 106

[Close]
BLAST of CmaCh11G004160 vs. ExPASy Swiss-Prot
Match: O81775 (Protein GLUTAMINE DUMPER 1 OS=Arabidopsis thaliana OX=3702 GN=GDU1 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-19
Identity = 66/137 (48.18%), Postives = 80/137 (58.39%), Query Frame = 0 

Query: 27  SPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGYLDSGDANNREPDLEAGDDTRKP 86
           SPWHSPVPYLFGGLAAMLGLIAFALLILACSYW+LS   +  D  N + + E+    +  
Sbjct: 28  SPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSSSGEE-DGQNVDEEKESRSGDKAA 87

Query: 87  SPVFEEKLLVIMAGEIKPTYLATPMSSRSSSFGDTKSNSSSSATATDEKDEKSVAVTETV 146
           +  +EEK LVIMAGE  P YLATP   + +  G       S         E+SVA  E  
Sbjct: 88  NGAYEEKFLVIMAGEDLPRYLATPAMKKCTCGGHEGKMVIS--------QEESVAKEEEK 147

Query: 147 KQSSGEEEVQSTENRET 164
            +   EE+V+ T    T
Sbjct: 148 MREGEEEKVKDTGETTT 155

[Close]
BLAST of CmaCh11G004160 vs. TAIR 10
Match: AT5G57685.1 (glutamine dumper 3 )

HSP 1 Score: 119.4 bits (298), Expect = 2.8e-27
Identity = 74/131 (56.49%), Postives = 83/131 (63.36%), Query Frame = 0 

Query: 26  HSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGYLDSGDANNREPDLEAGD---D 85
           HSPWHSPVPYLFGGLAAMLGLIAFALLILACSYW+LSGYLD  +  +RE DLE GD   D
Sbjct: 25  HSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSGYLDGEENQSRERDLEVGDVKPD 84

Query: 86  TRKPSPV-FEEKLLVIMAGEIKPTYLATPMSSRSSSFGDTKSNSSSSATATDEKDEKSVA 145
                PV   EK LVIMAG +KPTYLATP           K+ +       D+  E S  
Sbjct: 85  KTAVKPVALPEKFLVIMAGNVKPTYLATP---------SVKTCTCDDDDDEDDDVEGSDQ 144

Query: 146 VTETVKQSSGE 153
           V     +S+GE
Sbjct: 145 VVPRSSESNGE 146

[Close]
BLAST of CmaCh11G004160 vs. TAIR 10
Match: AT4G25760.1 (glutamine dumper 2 )

HSP 1 Score: 107.8 bits (268), Expect = 8.6e-24
Identity = 61/104 (58.65%), Postives = 70/104 (67.31%), Query Frame = 0 

Query: 26  HSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGYLDSGDANNREPDLEAGDDTRK 85
           HSPWHSPVPYLFGGLAAML LI  ALLILACSYW+LSG        + E DLEAGDD + 
Sbjct: 25  HSPWHSPVPYLFGGLAAMLALICVALLILACSYWRLSG--------SAERDLEAGDDAKP 84

Query: 86  PSPV-------FEEKLLVIMAGEIKPTYLATP--MSSRSSSFGD 121
            +           EK LVIMAG+++PTYLATP   S +S + GD
Sbjct: 85  DNDTNKTKHTEMPEKFLVIMAGDVRPTYLATPATRSEQSCTCGD 120

[Close]
BLAST of CmaCh11G004160 vs. TAIR 10
Match: AT2G24762.1 (glutamine dumper 4 )

HSP 1 Score: 102.1 bits (253), Expect = 4.7e-22
Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = 0 

Query: 27  SPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLS-GYLDSGDANNREPDLEAGDDTRK 86
           SPWHSPVPYLFGGLAAMLGLIAFALLILACSYW+LS    DSG+  + E +  +G   + 
Sbjct: 31  SPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSTSGDDSGERVDEEKESRSG--VKA 90

Query: 87  PSPVFEEKLLVIMAGEIKPTYLATPMSSR 115
            S   EEK+LVIMAG+  P +LATP +++
Sbjct: 91  ASAACEEKVLVIMAGDDLPRFLATPAANK 117

[Close]
BLAST of CmaCh11G004160 vs. TAIR 10
Match: AT5G24920.1 (glutamine dumper 5 )

HSP 1 Score: 101.7 bits (252), Expect = 6.1e-22
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = 0 

Query: 21  LQQQQHSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGYLDSGDANNREPDLEAG 80
           ++ Q  SPW +PVPYLFGGLAAMLGLIAFALL+LACSYW+L     S    + E   E+G
Sbjct: 20  VESQTRSPWRTPVPYLFGGLAAMLGLIAFALLLLACSYWRL-----SRQTEDEEKQTESG 79

Query: 81  DDTRKPSPVFEEKLLVIMAGEIKPTYLATPMSSR 115
           +  +  +  FEEK+LVIMAG+  PT+LATP++++
Sbjct: 80  E--KVVAKAFEEKILVIMAGQNNPTFLATPVAAK 106

[Close]
BLAST of CmaCh11G004160 vs. TAIR 10
Match: AT4G31730.1 (glutamine dumper 1 )

HSP 1 Score: 97.8 bits (242), Expect = 8.9e-21
Identity = 66/137 (48.18%), Postives = 80/137 (58.39%), Query Frame = 0 

Query: 27  SPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGYLDSGDANNREPDLEAGDDTRKP 86
           SPWHSPVPYLFGGLAAMLGLIAFALLILACSYW+LS   +  D  N + + E+    +  
Sbjct: 28  SPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSSSGEE-DGQNVDEEKESRSGDKAA 87

Query: 87  SPVFEEKLLVIMAGEIKPTYLATPMSSRSSSFGDTKSNSSSSATATDEKDEKSVAVTETV 146
           +  +EEK LVIMAGE  P YLATP   + +  G       S         E+SVA  E  
Sbjct: 88  NGAYEEKFLVIMAGEDLPRYLATPAMKKCTCGGHEGKMVIS--------QEESVAKEEEK 147

Query: 147 KQSSGEEEVQSTENRET 164
            +   EE+V+ T    T
Sbjct: 148 MREGEEEKVKDTGETTT 155

The following BLAST results are available for this feature:
BLAST of CmaCh11G004160 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FHH54.0e-2656.49Protein GLUTAMINE DUMPER 3 OS=Arabidopsis thaliana OX=3702 GN=GDU3 PE=1 SV=1[more]
Q9SW071.2e-2258.65Protein GLUTAMINE DUMPER 2 OS=Arabidopsis thaliana OX=3702 GN=GDU2 PE=2 SV=1[more]
Q8S8A06.6e-2161.80Protein GLUTAMINE DUMPER 4 OS=Arabidopsis thaliana OX=3702 GN=GDU4 PE=2 SV=1[more]
Q3E9658.6e-2155.32Protein GLUTAMINE DUMPER 5 OS=Arabidopsis thaliana OX=3702 GN=GDU5 PE=2 SV=2[more]
O817751.2e-1948.18Protein GLUTAMINE DUMPER 1 OS=Arabidopsis thaliana OX=3702 GN=GDU1 PE=1 SV=1[more]
BLAST of CmaCh11G004160 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G57685.12.8e-2756.49glutamine dumper 3 [more]
AT4G25760.18.6e-2458.65glutamine dumper 2 [more]
AT2G24762.14.7e-2261.80glutamine dumper 4 [more]
AT5G24920.16.1e-2255.32glutamine dumper 5 [more]
AT4G31730.18.9e-2148.18glutamine dumper 1 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..172
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..130
NoneNo IPR availablePANTHERPTHR33228:SF5PROTEIN GLUTAMINE DUMPER 2coord: 17..160
IPR040359Protein glutamine dumperPANTHERPTHR33228PROTEIN GLUTAMINE DUMPER 4-RELATEDcoord: 17..160

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G004160.1CmaCh11G004160.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0080143 regulation of amino acid export
cellular_component GO:0016021 integral component of membrane