CmaCh11G003880 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G003880
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionAP2-like ethylene-responsive transcription factor AIL5
LocationCma_Chr11: 1927730 .. 1930487 (-)
RNA-Seq ExpressionCmaCh11G003880
SyntenyCmaCh11G003880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTCCACCCCCAATATCTCATTTTCTTCTCATTTTTCTCTCGCCGCCGCCACCACCACCACCACCACCACCACAACAACCACCGCTTCACTGCGAAGCCACCAATTTTTTATAGAATGAACTCTTCTTCCTCTTCTAATTCTTCCTCGTCTTCCTCTTCTTCCTCCTCTTCAAATTGGCTTGCTTTTTCTCTCTCTAACAATCCCAACTCTCTCTCTCTATTCCACCACCCTAATCCTCCCGATCTCTCCATTTTCTCCCCCAAGCTCGAGGATTTTCTCCGGGGAGCTTCCACCCCTCCGCCGCTGCCGTCTCCCTACCAGTTTTCTCCCCATCAAACGCCCCTCACTTTCTGTGAAGAATCCGAGATTTGCGATTCTGATCTCAAAACCATAGCCGCTAGTTTCCTCCGTGGATCTCCCTCCCAGTTCCCCGAACAACACCTTCAGCAGCATCTCCACGCGCCGCCTCCCCACCCTCTGCCTGATACCCTAACCAATCCACCGCCGCCGCCTCCCAAGAAGTCCGTCGATACTTTCGGCCAACGTACCTCCATCTACCGCGGTGTTACAAGGTAACAATTCATTAAAAATAAAATATAAAAAAAAACCCTTTATTTATTTATTAATTTACTTATTTGGGGTTTCATAAAAAATGATTTATATGTTATTTAAATGTTATTATATGGTTCAGACACAGATGGACTGGTCGATATGAAGCTCATTTGTGGGATAACAGTTGCAGAAGAGAGGGTCAGAGTAGGAAAGGAAGACAAGGTAATTTCTTTTTTTTTTTTTTTTGTACTTGTTATTAATAATTATTTATTTTTGCTCTGGACGAACCCAAAAATTTATTTTTAGGGTTTCCAAATGTGGAATAAAACAACCACATTTATGTATAAAATGCTGTCTCTTCTTTTTTACCTCAAAAAAAAAAAAAAAAAAAGCTGTTTTTTCTCTGCAAGATTACTGTCCTTTTTCCTAATGAAAATTCAGAAGATATTTTTTTAGAAAAATTAAAACTTGAATGAATTAGGGTTTTTTTTTTTTGTAAGATTCTGATGTGGGTCTTTGTTTTTTTCCATCTTGTTTTGGTGATCGGACGTGATTGATCGTTGCTGCCATGGATGGATTCTCATTTCTCAGTTTATTTGGGTGAGTTTTTATTTATTAAAAAAAATATTAAGTTGTGATATAAATATAGAAATGTATGATTGAGTCATCACAAAAAGAACACAGATCAGACAGTGTGTCTGTCTGGGTTTCGACAGTGCCAAAGATTCTCTTCAAAGATTTATTCTCTCATTCAATTTGAATTTGAATTTCGAATAACTTATTATTATTATTATTAATTATGTCTTTTGTGATTAGGTGGTTATGACAAGGAAGAAAAAGCAGCTCGAGCTTATGATCTCGCTGCTCTCAAATACTGGGGTCCGACCACCACCACCAACTTTCCGGTGAGTTTTTTTTTTTTAAATTTCCCTACTTTTTTCCATTTTTTTATTTTTTTAAAAATGTTTTTTTTCTTCTTCATTTTAAAGGTGTCGGATTACGAAAAAGACCTGGAGAATATGAAGAACATGACCAGACAAGAATTTGTCGCTTCATTAAGAAGGTATTAACATTAACATCTAAACATTTTAATTATTTTTTACAATTTTTTCAATTTTTTTTTCTCTTTCAAAATAGGAAAAGCAGCGGTTTCTCTAGAGGAGCTTCTATTTACAGAGGTGTAACAAGGTATTTAATAATTTTTTTTTTTTTTTTTTCTTTTCTGAAGTGTTTATTGAAAACGACATGTTTTGTTGTTCAGGCACCACCAACATGGCAGATGGCAAGCAAGAATCGGGAGGGTTGCTGGCAATAAAGATCTCTACCTTGGAACTTTCAGTAAGCTCTCTAATTAATTAATTATGTTTCAATTTAATTATTGTTATTATATGATTAATTATTTTATATAAATAGGCACTCAGGAAGAAGCAGCGGAGGCGTATGATATTGCGGCCATCAAATTCCGAGGCCTAAACGCTGTCACCAACTTCGATATAAGTCGCTACGACGTCAAAAGCATTGCCAGCAGCAACCTTCCCATCGGAGGCATGTCGGCCACCAAATCCAAACCCACCACCGACTCCTCCGCCTCCGAAGACCGCGACGTGCACCATTCTCCCGTCTCCTCCACCGCGACTCTCCTCCCATCTCACCCCAACACCTCCACTCTAACCTTCGGAATGCCGCCCATCAAACAAGACCCATCCGACCAATACTGGTCCATGTTCGGCTACAACGTTCCCCCACCAACATCCTCATCCTCCTTCACAATGTTCCAACAACCTTCAAACACCGCATCCACAACGTTCCCCGCCGTCGCCGACCTACCTCCAACCGCCTCGCCGCCGCTCCCCGAAGGCGGCGCTTACGAGCAGCACCAACAATTTGCAGCCCCGATAGCTTTAAGTAGAGCAAGCCTGTTTCAAACGCCAATATTTGGAATAGAATGAAAGGCGTGAAGGGAGGGTTTTGACATTTTATGAATAGGTGGATAATATGGTAGCTGCCACTAAGCTGACTGTGTAGTAATCAAAGCTGTGTACTGACCTTTTTTTTTTCTTTGTTTTTTTAGATTATGCTTTTTTCTTTTCTTTTATTATGTATTTTCTTTACCTTCAGTCACTCACTATATTTTGTCTTTGTTATGGGCAAATTTTATATTAAAAAAAAAAAATGGTCCTTTTCCATTCCTATACCCATTTCAT

mRNA sequence

CCTTCCACCCCCAATATCTCATTTTCTTCTCATTTTTCTCTCGCCGCCGCCACCACCACCACCACCACCACCACAACAACCACCGCTTCACTGCGAAGCCACCAATTTTTTATAGAATGAACTCTTCTTCCTCTTCTAATTCTTCCTCGTCTTCCTCTTCTTCCTCCTCTTCAAATTGGCTTGCTTTTTCTCTCTCTAACAATCCCAACTCTCTCTCTCTATTCCACCACCCTAATCCTCCCGATCTCTCCATTTTCTCCCCCAAGCTCGAGGATTTTCTCCGGGGAGCTTCCACCCCTCCGCCGCTGCCGTCTCCCTACCAGTTTTCTCCCCATCAAACGCCCCTCACTTTCTGTGAAGAATCCGAGATTTGCGATTCTGATCTCAAAACCATAGCCGCTAGTTTCCTCCGTGGATCTCCCTCCCAGTTCCCCGAACAACACCTTCAGCAGCATCTCCACGCGCCGCCTCCCCACCCTCTGCCTGATACCCTAACCAATCCACCGCCGCCGCCTCCCAAGAAGTCCGTCGATACTTTCGGCCAACGTACCTCCATCTACCGCGGTGTTACAAGACACAGATGGACTGGTCGATATGAAGCTCATTTGTGGGATAACAGTTGCAGAAGAGAGGGTCAGAGTAGGAAAGGAAGACAAGTTTATTTGGGTGGTTATGACAAGGAAGAAAAAGCAGCTCGAGCTTATGATCTCGCTGCTCTCAAATACTGGGGTCCGACCACCACCACCAACTTTCCGGTGTCGGATTACGAAAAAGACCTGGAGAATATGAAGAACATGACCAGACAAGAATTTGTCGCTTCATTAAGAAGGAAAAGCAGCGGTTTCTCTAGAGGAGCTTCTATTTACAGAGGTGTAACAAGGCACCACCAACATGGCAGATGGCAAGCAAGAATCGGGAGGGTTGCTGGCAATAAAGATCTCTACCTTGGAACTTTCAGCACTCAGGAAGAAGCAGCGGAGGCGTATGATATTGCGGCCATCAAATTCCGAGGCCTAAACGCTGTCACCAACTTCGATATAAGTCGCTACGACGTCAAAAGCATTGCCAGCAGCAACCTTCCCATCGGAGGCATGTCGGCCACCAAATCCAAACCCACCACCGACTCCTCCGCCTCCGAAGACCGCGACGTGCACCATTCTCCCGTCTCCTCCACCGCGACTCTCCTCCCATCTCACCCCAACACCTCCACTCTAACCTTCGGAATGCCGCCCATCAAACAAGACCCATCCGACCAATACTGGTCCATGTTCGGCTACAACGTTCCCCCACCAACATCCTCATCCTCCTTCACAATGTTCCAACAACCTTCAAACACCGCATCCACAACGTTCCCCGCCGTCGCCGACCTACCTCCAACCGCCTCGCCGCCGCTCCCCGAAGGCGGCGCTTACGAGCAGCACCAACAATTTGCAGCCCCGATAGCTTTAAGTAGAGCAAGCCTGTTTCAAACGCCAATATTTGGAATAGAATGAAAGGTGGATAATATGGTAGCTGCCACTAAGCTGACTGTGTAGTAATCAAAGCTGTGTACTGACCTTTTTTTTTTCTTTGTTTTTTTAGATTATGCTTTTTTCTTTTCTTTTATTATGTATTTTCTTTACCTTCAGTCACTCACTATATTTTGTCTTTGTTATGGGCAAATTTTATATTAAAAAAAAAAAATGGTCCTTTTCCATTCCTATACCCATTTCAT

Coding sequence (CDS)

ATGAACTCTTCTTCCTCTTCTAATTCTTCCTCGTCTTCCTCTTCTTCCTCCTCTTCAAATTGGCTTGCTTTTTCTCTCTCTAACAATCCCAACTCTCTCTCTCTATTCCACCACCCTAATCCTCCCGATCTCTCCATTTTCTCCCCCAAGCTCGAGGATTTTCTCCGGGGAGCTTCCACCCCTCCGCCGCTGCCGTCTCCCTACCAGTTTTCTCCCCATCAAACGCCCCTCACTTTCTGTGAAGAATCCGAGATTTGCGATTCTGATCTCAAAACCATAGCCGCTAGTTTCCTCCGTGGATCTCCCTCCCAGTTCCCCGAACAACACCTTCAGCAGCATCTCCACGCGCCGCCTCCCCACCCTCTGCCTGATACCCTAACCAATCCACCGCCGCCGCCTCCCAAGAAGTCCGTCGATACTTTCGGCCAACGTACCTCCATCTACCGCGGTGTTACAAGACACAGATGGACTGGTCGATATGAAGCTCATTTGTGGGATAACAGTTGCAGAAGAGAGGGTCAGAGTAGGAAAGGAAGACAAGTTTATTTGGGTGGTTATGACAAGGAAGAAAAAGCAGCTCGAGCTTATGATCTCGCTGCTCTCAAATACTGGGGTCCGACCACCACCACCAACTTTCCGGTGTCGGATTACGAAAAAGACCTGGAGAATATGAAGAACATGACCAGACAAGAATTTGTCGCTTCATTAAGAAGGAAAAGCAGCGGTTTCTCTAGAGGAGCTTCTATTTACAGAGGTGTAACAAGGCACCACCAACATGGCAGATGGCAAGCAAGAATCGGGAGGGTTGCTGGCAATAAAGATCTCTACCTTGGAACTTTCAGCACTCAGGAAGAAGCAGCGGAGGCGTATGATATTGCGGCCATCAAATTCCGAGGCCTAAACGCTGTCACCAACTTCGATATAAGTCGCTACGACGTCAAAAGCATTGCCAGCAGCAACCTTCCCATCGGAGGCATGTCGGCCACCAAATCCAAACCCACCACCGACTCCTCCGCCTCCGAAGACCGCGACGTGCACCATTCTCCCGTCTCCTCCACCGCGACTCTCCTCCCATCTCACCCCAACACCTCCACTCTAACCTTCGGAATGCCGCCCATCAAACAAGACCCATCCGACCAATACTGGTCCATGTTCGGCTACAACGTTCCCCCACCAACATCCTCATCCTCCTTCACAATGTTCCAACAACCTTCAAACACCGCATCCACAACGTTCCCCGCCGTCGCCGACCTACCTCCAACCGCCTCGCCGCCGCTCCCCGAAGGCGGCGCTTACGAGCAGCACCAACAATTTGCAGCCCCGATAGCTTTAAGTAGAGCAAGCCTGTTTCAAACGCCAATATTTGGAATAGAATGA

Protein sequence

MNSSSSSNSSSSSSSSSSSNWLAFSLSNNPNSLSLFHHPNPPDLSIFSPKLEDFLRGASTPPPLPSPYQFSPHQTPLTFCEESEICDSDLKTIAASFLRGSPSQFPEQHLQQHLHAPPPHPLPDTLTNPPPPPPKKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSDYEKDLENMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSATKSKPTTDSSASEDRDVHHSPVSSTATLLPSHPNTSTLTFGMPPIKQDPSDQYWSMFGYNVPPPTSSSSFTMFQQPSNTASTTFPAVADLPPTASPPLPEGGAYEQHQQFAAPIALSRASLFQTPIFGIE
Homology
[Close]
BLAST of CmaCh11G003880 vs. ExPASy Swiss-Prot
Match: Q6PQQ3 (AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana OX=3702 GN=AIL5 PE=2 SV=2)

HSP 1 Score: 419.1 bits (1076), Expect = 6.5e-116
Identity = 278/515 (53.98%), Postives = 315/515 (61.17%), Query Frame = 0 

Query: 2   NSSSSSNS-----SSSSSSSSSSNWLAFSLSNNPN------------SLSLFHHPNPPDL 61
           N SSSS+S     S SSSSSS  NWL+FSLSNN N            S S  HHP+P  L
Sbjct: 6   NKSSSSSSYDSSLSPSSSSSSHQNWLSFSLSNNNNNFNSSSNPNLTSSTSDHHHPHPSHL 65

Query: 62  SIF-------------------------------SPKLEDFL-RGASTPPPLPSPYQ--- 121
           S+F                                PKLE+FL  GAST    P       
Sbjct: 66  SLFQAFSTSPVERQDGSPGVSPSDATAVLSVYPGGPKLENFLGGGASTTTTRPMQQVQSL 125

Query: 122 -----FSPHQTPLTFCEESEICDSDLKTIAASFL----RGSPSQFPEQHLQQHLHAPPPH 181
                 S  Q PL     +EI DS+LK+IAASFL     G  S+    H QQ      P+
Sbjct: 126 GGVVFSSDLQPPLHPPSAAEIYDSELKSIAASFLGNYSGGHSSEVSSVHKQQ------PN 185

Query: 182 PLPDTLTNPPPPPPKKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQ 241
           PL     +   P PKK+V++FGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQ
Sbjct: 186 PL---AVSEASPTPKKNVESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQ 245

Query: 242 VYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSDYEKDLENMKNMTRQEFVASLRRKS 301
           VYLGGYDKE+KAARAYDLAALKYWGPTTTTNFP+S+YE +LE MK+MTRQEFVASLRRKS
Sbjct: 246 VYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYESELEEMKHMTRQEFVASLRRKS 305

Query: 302 SGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGL 361
           SGFSRGAS+YRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGL
Sbjct: 306 SGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGL 365

Query: 362 NAVTNFDISRYDVKSIASSNLPIGGMSATKSKPTTDSSASEDRDVHHSPVSSTATL---- 421
           NAVTNFDISRYDVKSIAS NLP+GG+    S  T  +  + D     SP  +T +L    
Sbjct: 366 NAVTNFDISRYDVKSIASCNLPVGGLMPKPSPATAAADKTVDLSPSDSPSLTTPSLTFNV 425

Query: 422 -LPSHPNTSTLTFGMPPIKQDPSDQYWS-MFGYNVPPPTSSSSFTMFQQPSNTASTTFPA 444
             P + +  T      PIK DP+D YWS +FG+   P         F    +  S   P 
Sbjct: 426 ATPVNDHGGTFYHTGIPIKPDPADHYWSNIFGFQANPKAEMRPLANFGSDLHNPS---PG 485

[Close]
BLAST of CmaCh11G003880 vs. ExPASy Swiss-Prot
Match: Q5YGP7 (AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana OX=3702 GN=PLT2 PE=2 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 7.2e-99
Identity = 176/212 (83.02%), Postives = 197/212 (92.92%), Query Frame = 0 

Query: 134 PKKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAA 193
           P+++++TFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAA
Sbjct: 177 PRRTLETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAA 236

Query: 194 RAYDLAALKYWGPTTTTNFPVSDYEKDLENMKNMTRQEFVASLRRKSSGFSRGASIYRGV 253
           RAYDLAALKYWGP+TTTNFP+++YEK++E MKNMTRQEFVAS+RRKSSGFSRGAS+YRGV
Sbjct: 237 RAYDLAALKYWGPSTTTNFPITNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGV 296

Query: 254 TRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDV 313
           TRHHQHGRWQARIGRVAGNKDLYLGTFST+EEAAEAYDIAAIKFRGLNAVTNF+I+RYDV
Sbjct: 297 TRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRYDV 356

Query: 314 KSIASSN-LPIGGMSATKSKPTTDSSASEDRD 345
           K+I  SN LPIGG +A + K      +S  R+
Sbjct: 357 KAILESNTLPIGGGAAKRLKEAQALESSRKRE 388

[Close]
BLAST of CmaCh11G003880 vs. ExPASy Swiss-Prot
Match: Q5YGP8 (AP2-like ethylene-responsive transcription factor PLT1 OS=Arabidopsis thaliana OX=3702 GN=PLT1 PE=2 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 3.0e-97
Identity = 174/221 (78.73%), Postives = 200/221 (90.50%), Query Frame = 0 

Query: 134 PKKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAA 193
           P++++DTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKE+KAA
Sbjct: 168 PRRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAA 227

Query: 194 RAYDLAALKYWGPTTTTNFPVSDYEKDLENMKNMTRQEFVASLRRKSSGFSRGASIYRGV 253
           R+YDLAALKYWGP+TTTNFP+++YEK++E MK+MTRQEFVA++RRKSSGFSRGAS+YRGV
Sbjct: 228 RSYDLAALKYWGPSTTTNFPITNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGV 287

Query: 254 TRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDV 313
           TRHHQHGRWQARIGRVAGNKDLYLGTFST+EEAAEAYDIAAIKFRGLNAVTNF+I+RYDV
Sbjct: 288 TRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRYDV 347

Query: 314 KSI-ASSNLPIGGMSATKSKPTTDSSASEDRDVHHSPVSST 354
           K+I  SS LPIGG +A + K      +S  R+     + S+
Sbjct: 348 KAILESSTLPIGGGAAKRLKEAQALESSRKREAEMIALGSS 388

[Close]
BLAST of CmaCh11G003880 vs. ExPASy Swiss-Prot
Match: Q6J9N8 (AP2-like ethylene-responsive transcription factor AIL7 OS=Arabidopsis thaliana OX=3702 GN=AIL7 PE=2 SV=2)

HSP 1 Score: 347.8 bits (891), Expect = 1.8e-94
Identity = 181/278 (65.11%), Postives = 220/278 (79.14%), Query Frame = 0 

Query: 135 KKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAAR 194
           KK V+T GQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQ+RKGRQVYLGGYDKE++AAR
Sbjct: 219 KKIVETLGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDRAAR 278

Query: 195 AYDLAALKYWGPTTTTNFPVSDYEKDLENMKNMTRQEFVASLRRKSSGFSRGASIYRGVT 254
           AYDLAALKYWG T TTNFPVS Y K+LE M +MT+QEF+ASLRRKSSGFSRGASIYRGVT
Sbjct: 279 AYDLAALKYWGSTATTNFPVSSYSKELEEMNHMTKQEFIASLRRKSSGFSRGASIYRGVT 338

Query: 255 RHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVK 314
           RHHQ GRWQARIGRVAGNKDLYLGTF+T+EEAAEAYDIAAIKFRG+NAVTNF+++RYD++
Sbjct: 339 RHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGINAVTNFEMNRYDIE 398

Query: 315 SIASSNLPIGGMSATKSK----PTTDSSASEDRDVHHSPVSSTATLLPSHPNTSTLTFGM 374
           ++ +S+LP+GG +A + K      + SS+S D ++    +  +++  PS  N +++  G+
Sbjct: 399 AVMNSSLPVGGAAAKRHKLKLALESPSSSSSDHNLQQQQLLPSSS--PSDQNPNSIPCGI 458

Query: 375 PPIKQDPSDQYWSMFGYNVPPPTSSSSFTMFQQPSNTA 409
           P    +PS  Y+    +   P  S S+    Q P N A
Sbjct: 459 P---FEPSVLYYHQNFFQHYPLVSDST---IQAPMNQA 488

[Close]
BLAST of CmaCh11G003880 vs. ExPASy Swiss-Prot
Match: Q8LSN2 (AP2-like ethylene-responsive transcription factor BBM2 OS=Brassica napus OX=3708 GN=BBM2 PE=2 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 1.8e-94
Identity = 169/201 (84.08%), Postives = 188/201 (93.53%), Query Frame = 0 

Query: 125 TLTNPPPPPPKKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLG 184
           T+ +     PKK++++FGQRTSIYRGVTRHRWTGRYEAHLWDNSC+REGQ+RKGRQVYLG
Sbjct: 188 TIDDSVEATPKKTIESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLG 247

Query: 185 GYDKEEKAARAYDLAALKYWGPTTTTNFPVSDYEKDLENMKNMTRQEFVASLRRKSSGFS 244
           GYDKEEKAARAYDLAALKYWG TTTTNFP+S+YEK++E MK+MTRQE+VASLRRKSSGFS
Sbjct: 248 GYDKEEKAARAYDLAALKYWGTTTTTNFPMSEYEKEIEEMKHMTRQEYVASLRRKSSGFS 307

Query: 245 RGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVT 304
           RGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTF TQEEAAEAYDIAAIKFRGL AVT
Sbjct: 308 RGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLTAVT 367

Query: 305 NFDISRYDVKSIASS-NLPIG 325
           NFD++RY+VK+I  S +LPIG
Sbjct: 368 NFDMNRYNVKAILESPSLPIG 388

[Close]
BLAST of CmaCh11G003880 vs. TAIR 10
Match: AT5G57390.1 (AINTEGUMENTA-like 5 )

HSP 1 Score: 419.1 bits (1076), Expect = 4.6e-117
Identity = 278/515 (53.98%), Postives = 315/515 (61.17%), Query Frame = 0 

Query: 2   NSSSSSNS-----SSSSSSSSSSNWLAFSLSNNPN------------SLSLFHHPNPPDL 61
           N SSSS+S     S SSSSSS  NWL+FSLSNN N            S S  HHP+P  L
Sbjct: 6   NKSSSSSSYDSSLSPSSSSSSHQNWLSFSLSNNNNNFNSSSNPNLTSSTSDHHHPHPSHL 65

Query: 62  SIF-------------------------------SPKLEDFL-RGASTPPPLPSPYQ--- 121
           S+F                                PKLE+FL  GAST    P       
Sbjct: 66  SLFQAFSTSPVERQDGSPGVSPSDATAVLSVYPGGPKLENFLGGGASTTTTRPMQQVQSL 125

Query: 122 -----FSPHQTPLTFCEESEICDSDLKTIAASFL----RGSPSQFPEQHLQQHLHAPPPH 181
                 S  Q PL     +EI DS+LK+IAASFL     G  S+    H QQ      P+
Sbjct: 126 GGVVFSSDLQPPLHPPSAAEIYDSELKSIAASFLGNYSGGHSSEVSSVHKQQ------PN 185

Query: 182 PLPDTLTNPPPPPPKKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQ 241
           PL     +   P PKK+V++FGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQ
Sbjct: 186 PL---AVSEASPTPKKNVESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQ 245

Query: 242 VYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSDYEKDLENMKNMTRQEFVASLRRKS 301
           VYLGGYDKE+KAARAYDLAALKYWGPTTTTNFP+S+YE +LE MK+MTRQEFVASLRRKS
Sbjct: 246 VYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYESELEEMKHMTRQEFVASLRRKS 305

Query: 302 SGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGL 361
           SGFSRGAS+YRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGL
Sbjct: 306 SGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGL 365

Query: 362 NAVTNFDISRYDVKSIASSNLPIGGMSATKSKPTTDSSASEDRDVHHSPVSSTATL---- 421
           NAVTNFDISRYDVKSIAS NLP+GG+    S  T  +  + D     SP  +T +L    
Sbjct: 366 NAVTNFDISRYDVKSIASCNLPVGGLMPKPSPATAAADKTVDLSPSDSPSLTTPSLTFNV 425

Query: 422 -LPSHPNTSTLTFGMPPIKQDPSDQYWS-MFGYNVPPPTSSSSFTMFQQPSNTASTTFPA 444
             P + +  T      PIK DP+D YWS +FG+   P         F    +  S   P 
Sbjct: 426 ATPVNDHGGTFYHTGIPIKPDPADHYWSNIFGFQANPKAEMRPLANFGSDLHNPS---PG 485

[Close]
BLAST of CmaCh11G003880 vs. TAIR 10
Match: AT1G51190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 362.5 bits (929), Expect = 5.1e-100
Identity = 176/212 (83.02%), Postives = 197/212 (92.92%), Query Frame = 0 

Query: 134 PKKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAA 193
           P+++++TFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAA
Sbjct: 177 PRRTLETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAA 236

Query: 194 RAYDLAALKYWGPTTTTNFPVSDYEKDLENMKNMTRQEFVASLRRKSSGFSRGASIYRGV 253
           RAYDLAALKYWGP+TTTNFP+++YEK++E MKNMTRQEFVAS+RRKSSGFSRGAS+YRGV
Sbjct: 237 RAYDLAALKYWGPSTTTNFPITNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGV 296

Query: 254 TRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDV 313
           TRHHQHGRWQARIGRVAGNKDLYLGTFST+EEAAEAYDIAAIKFRGLNAVTNF+I+RYDV
Sbjct: 297 TRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRYDV 356

Query: 314 KSIASSN-LPIGGMSATKSKPTTDSSASEDRD 345
           K+I  SN LPIGG +A + K      +S  R+
Sbjct: 357 KAILESNTLPIGGGAAKRLKEAQALESSRKRE 388

[Close]
BLAST of CmaCh11G003880 vs. TAIR 10
Match: AT3G20840.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 357.1 bits (915), Expect = 2.2e-98
Identity = 174/221 (78.73%), Postives = 200/221 (90.50%), Query Frame = 0 

Query: 134 PKKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAA 193
           P++++DTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKE+KAA
Sbjct: 168 PRRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAA 227

Query: 194 RAYDLAALKYWGPTTTTNFPVSDYEKDLENMKNMTRQEFVASLRRKSSGFSRGASIYRGV 253
           R+YDLAALKYWGP+TTTNFP+++YEK++E MK+MTRQEFVA++RRKSSGFSRGAS+YRGV
Sbjct: 228 RSYDLAALKYWGPSTTTNFPITNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGV 287

Query: 254 TRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDV 313
           TRHHQHGRWQARIGRVAGNKDLYLGTFST+EEAAEAYDIAAIKFRGLNAVTNF+I+RYDV
Sbjct: 288 TRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRYDV 347

Query: 314 KSI-ASSNLPIGGMSATKSKPTTDSSASEDRDVHHSPVSST 354
           K+I  SS LPIGG +A + K      +S  R+     + S+
Sbjct: 348 KAILESSTLPIGGGAAKRLKEAQALESSRKREAEMIALGSS 388

[Close]
BLAST of CmaCh11G003880 vs. TAIR 10
Match: AT5G17430.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 347.8 bits (891), Expect = 1.3e-95
Identity = 169/201 (84.08%), Postives = 189/201 (94.03%), Query Frame = 0 

Query: 125 TLTNPPPPPPKKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLG 184
           T+ +     PKK++++FGQRTSIYRGVTRHRWTGRYEAHLWDNSC+REGQ+RKGRQVYLG
Sbjct: 188 TIVDVVETTPKKTIESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLG 247

Query: 185 GYDKEEKAARAYDLAALKYWGPTTTTNFPVSDYEKDLENMKNMTRQEFVASLRRKSSGFS 244
           GYDKEEKAARAYDLAALKYWG TTTTNFP+S+YEK++E MK+MTRQE+VASLRRKSSGFS
Sbjct: 248 GYDKEEKAARAYDLAALKYWGTTTTTNFPLSEYEKEVEEMKHMTRQEYVASLRRKSSGFS 307

Query: 245 RGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVT 304
           RGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTF TQEEAAEAYDIAAIKFRGL+AVT
Sbjct: 308 RGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLSAVT 367

Query: 305 NFDISRYDVKSIASS-NLPIG 325
           NFD++RY+VK+I  S +LPIG
Sbjct: 368 NFDMNRYNVKAILESPSLPIG 388

[Close]
BLAST of CmaCh11G003880 vs. TAIR 10
Match: AT5G65510.1 (AINTEGUMENTA-like 7 )

HSP 1 Score: 347.8 bits (891), Expect = 1.3e-95
Identity = 181/278 (65.11%), Postives = 220/278 (79.14%), Query Frame = 0 

Query: 135 KKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAAR 194
           KK V+T GQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQ+RKGRQVYLGGYDKE++AAR
Sbjct: 219 KKIVETLGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDRAAR 278

Query: 195 AYDLAALKYWGPTTTTNFPVSDYEKDLENMKNMTRQEFVASLRRKSSGFSRGASIYRGVT 254
           AYDLAALKYWG T TTNFPVS Y K+LE M +MT+QEF+ASLRRKSSGFSRGASIYRGVT
Sbjct: 279 AYDLAALKYWGSTATTNFPVSSYSKELEEMNHMTKQEFIASLRRKSSGFSRGASIYRGVT 338

Query: 255 RHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVK 314
           RHHQ GRWQARIGRVAGNKDLYLGTF+T+EEAAEAYDIAAIKFRG+NAVTNF+++RYD++
Sbjct: 339 RHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGINAVTNFEMNRYDIE 398

Query: 315 SIASSNLPIGGMSATKSK----PTTDSSASEDRDVHHSPVSSTATLLPSHPNTSTLTFGM 374
           ++ +S+LP+GG +A + K      + SS+S D ++    +  +++  PS  N +++  G+
Sbjct: 399 AVMNSSLPVGGAAAKRHKLKLALESPSSSSSDHNLQQQQLLPSSS--PSDQNPNSIPCGI 458

Query: 375 PPIKQDPSDQYWSMFGYNVPPPTSSSSFTMFQQPSNTA 409
           P    +PS  Y+    +   P  S S+    Q P N A
Sbjct: 459 P---FEPSVLYYHQNFFQHYPLVSDST---IQAPMNQA 488

The following BLAST results are available for this feature:
BLAST of CmaCh11G003880 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6PQQ36.5e-11653.98AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana O... [more]
Q5YGP77.2e-9983.02AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana O... [more]
Q5YGP83.0e-9778.73AP2-like ethylene-responsive transcription factor PLT1 OS=Arabidopsis thaliana O... [more]
Q6J9N81.8e-9465.11AP2-like ethylene-responsive transcription factor AIL7 OS=Arabidopsis thaliana O... [more]
Q8LSN21.8e-9484.08AP2-like ethylene-responsive transcription factor BBM2 OS=Brassica napus OX=3708... [more]
BLAST of CmaCh11G003880 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G57390.14.6e-11753.98AINTEGUMENTA-like 5 [more]
AT1G51190.15.1e-10083.02Integrase-type DNA-binding superfamily protein [more]
AT3G20840.12.2e-9878.73Integrase-type DNA-binding superfamily protein [more]
AT5G17430.11.3e-9584.08Integrase-type DNA-binding superfamily protein [more]
AT5G65510.11.3e-9565.11AINTEGUMENTA-like 7 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 148..159
score: 45.3
coord: 289..309
score: 51.69
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 147..219
e-value: 3.3E-30
score: 116.4
coord: 249..313
e-value: 7.9E-34
score: 128.4
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 249..299
e-value: 2.9E-10
score: 40.2
coord: 147..205
e-value: 3.2E-13
score: 49.7
IPR001471AP2/ERF domainPROSITEPS51032AP2_ERFcoord: 147..213
score: 19.22967
IPR001471AP2/ERF domainPROSITEPS51032AP2_ERFcoord: 249..307
score: 19.045208
IPR001471AP2/ERF domainCDDcd00018AP2coord: 146..215
e-value: 1.89411E-23
score: 91.1791
IPR001471AP2/ERF domainCDDcd00018AP2coord: 248..309
e-value: 2.52203E-26
score: 98.883
IPR036955AP2/ERF domain superfamilyGENE3D3.30.730.10AP2/ERF domaincoord: 147..215
e-value: 5.0E-28
score: 99.0
coord: 249..309
e-value: 1.9E-22
score: 81.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 349..371
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 322..372
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..140
NoneNo IPR availablePANTHERPTHR32467AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTORcoord: 131..353
NoneNo IPR availablePANTHERPTHR32467:SF72AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBMcoord: 131..353
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 146..215
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 248..309

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G003880.1CmaCh11G003880.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity