CmaCh11G003820 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G003820
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	myb-related transcription factor, partner of profilin-like
Location	Cma_Chr11: 1902525 .. 1905186 (+)
RNA-Seq Expression	CmaCh11G003820
Synteny	CmaCh11G003820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGACTGAGTTTTTGAGTGGGCAAAAATCAAGGCACCCTCTCAAAATTAAAGCTAAGGTAAAGCAAAATTCCCACTCCCAATTTTCTCTGCAACTCCTTAAAGCTTCTTCTTCTTTCTTCAAAATCTTCGCCCTCAAGATCTCCCTCTCTTCCTTTTTCCAATCACAACAATGCCTATCAATACCGAATCTACGCCGCCTCCCTTGATCGGAAAAATTGGCCCTTACACCGTGTTCATGACCCCGCCGTCCACTCCTTCGCCCGCCTCTCCGCCGCAGCCGGTTTTCGAGTCCCCTAAGAAGGTCATTCAGCCGCCTCCTGTTCAGCCTCCGCCTCAGCAGTTCGATAAGTCTGTTTCTGTTGATACTGTGGCTAATGGGAATGCCTCCGTCGCTGGATTCTTTCGAAATGCGGTCTCGAAAGTGCAGAATGGTAATTCTTATTATTTGAAGTTAATGTTGCGATATTGAAGGTCCAGGAGACGGAATTTAGAGTATGATTTTTATGTTTTTGCTTGTGGAGGTACACAAGAACTCCTCTAGGGAAATTGATGAGTTCTTGAATGATGGAGTTTCGTGATTTCAGCAGTGTTTTAGCCCTATTGCTTGATGTGTTGCCATTGTTCCTTGTCTTTTTTGTTGTTGCCATTATTGGTAACAAGGGGAGACATGTTTATGAATCTTAGTATTCTCACTGTCTTGTCTTGTGAATTTCTTCTCTAATATAATGTTCTTCTGTATTTGCTTCTTCAAAGTTGGTTTTCTTTAAAATTTAACGACGGCAAATATTGTCTTGTCCTCTTTCGACTTTCCCTTCCAAGCTTTCCTTCGAGGTTTTTAAACGCGTATATTAAGAAGAGGTTTCTACACCCTCATAAGAAATGCTTTGGGACTTTCCCTTTCAAGCTTATTGTCTTCTTTGAGCTTTCTTTTCCAGGTTTCCCCTCAAAGTTCTAAAACATGTCTGCTAGGGAGAGGTCTACACCCTTATAAGAAATATTTTGTTCCCCTCACTGACCGATGTTAGACCTCACAATTCTGCTGGAGAGAGATTTCTACACCCTTATAAAAAATGCTTCGTTCCTCTCTCCAACCGATATGGGATCTCACAATCCACCCTCTTGGGGGCCAGAGTCCTCGCTAGCACACCTTTCGGTGTCTGGCTCTGATAACATTTGTAATAGTCCGAGGCTACTCCGTCTCTATTAGGGAGTCTTATAAGGAATGCTCTATTCCCCTCTTCAACCGATGTGGGGTCTCACAATCTCTTTTGTATGCTCTCCACATGAATATGTGCAAAATGTTTACTCATTTGTTAGTGAGAATTGTGTTCTTGGTTGGGACATTGAGGGAAAGAACAGAACAAAAAGAATAAAATTAGTGGCAAACCTTTGCTTCAGAGCTTAAATATTTCTTCCATGCATCTTTTTTTTTTCTGTAAACAATCAAAACATAAAGTTTTTGGTGCAATTTTGCAGCACATTCAAGCTTGGATGACCATTTGGCTCGCTGGTTCGGGTTAAATCAATCCAAGTACCAGTGGGCGCTAGATGACTATTACGAGAGCAAGGGAATGGTATGCATCTGCTCAAATTCATTAGTCCTTCAAGTACATATTCTTGTGTGTTCTTTTCTGAAATTTAGTGTTATTTCCCCAAATGTTAACAATGATTGTTCATTTCACTTATCTTTGCTCATCCATAGTCTATTATTTTGGCCTTTTCATAATTGAAACAACCACAATAATTTATTGAAACTGCATACACGAAGTAACTTTGAAGCGAACTTTCACTACTATTTCATGACGTAACTTTGAAGTCAAGTGTCTCTGTAACCGCCCAAGTTCACCATTAGCAGATATGGTTCTATTTGGACTTTCCTTTCTGAGGTTTCCCTCAAAGTTTTTAAAACGCATCTAGTAGGGAGAGGTTTCTACACCCTTATAAAGAATGTTTCGTTCTCCTCTTCAACCAATGTGAAATCTAATAGTCTCCCTAACTTGTTCACTTTTTATCATTGAGTACATTTATTTTCATCGAATACATAGGGTTAACTTGTGGAACCTATCTGTTGAGAAAGAAAAGTAGGGTGAAGAGGCTAACTGTGCTGCGGACGTGTGATCGAAGTTAGCACTTATGCTTCTATAGAGTAAAGGGAAACAATAATATATACATTTCTTGCTTGCCTTTGCTGAATTCTATGATTTAGTGCTTGAACATGCTTGGAGAGGGGAACGAAGTATTCTTTATAAGAGTGTGGAAACCTCTCCCTAGCAAATACGTTTTAAAACTGAGGGGAAGTCCAGAACGAAAAACCCAAAAAGGACAAAATTTGTTAGTGGTGGGCGTGGGCTGTTACAAATGATATTAGAGCTAGATACCAAGCGGTGTGTTAGTGAGAATATTGGGCTTCCAATGGGGGTGGATTGTGAGATCCCACGTTAGTTGGAGAGGGGAATGAAGCATTCTTTAAAAAGATGTGGAAACCTCTCCCTAGCAGACACGTTTTAAAACTAAGCCCAAATGAAATGTGGTTGTACATTTAATTCTATATTGAATTCAACTATGTGTATATGAGATGTTGAATCATAGCATTCTTCTGTTACTGCAGGAAAATGGGGACATGAAAGCGAAGGAACCGTCGAGCAAAGCCCAGAGCGTGTAA

mRNA sequence

AGACTGAGTTTTTGAGTGGGCAAAAATCAAGGCACCCTCTCAAAATTAAAGCTAAGGTAAAGCAAAATTCCCACTCCCAATTTTCTCTGCAACTCCTTAAAGCTTCTTCTTCTTTCTTCAAAATCTTCGCCCTCAAGATCTCCCTCTCTTCCTTTTTCCAATCACAACAATGCCTATCAATACCGAATCTACGCCGCCTCCCTTGATCGGAAAAATTGGCCCTTACACCGTGTTCATGACCCCGCCGTCCACTCCTTCGCCCGCCTCTCCGCCGCAGCCGGTTTTCGAGTCCCCTAAGAAGGTCATTCAGCCGCCTCCTGTTCAGCCTCCGCCTCAGCAGTTCGATAAGTCTGTTTCTGTTGATACTGTGGCTAATGGGAATGCCTCCGTCGCTGGATTCTTTCGAAATGCGGTCTCGAAAGTGCAGAATGCACATTCAAGCTTGGATGACCATTTGGCTCGCTGGTTCGGGTTAAATCAATCCAAGTACCAGTGGGCGCTAGATGACTATTACGAGAGCAAGGGAATGGAAAATGGGGACATGAAAGCGAAGGAACCGTCGAGCAAAGCCCAGAGCGTGTAA

Coding sequence (CDS)

ATGCCTATCAATACCGAATCTACGCCGCCTCCCTTGATCGGAAAAATTGGCCCTTACACCGTGTTCATGACCCCGCCGTCCACTCCTTCGCCCGCCTCTCCGCCGCAGCCGGTTTTCGAGTCCCCTAAGAAGGTCATTCAGCCGCCTCCTGTTCAGCCTCCGCCTCAGCAGTTCGATAAGTCTGTTTCTGTTGATACTGTGGCTAATGGGAATGCCTCCGTCGCTGGATTCTTTCGAAATGCGGTCTCGAAAGTGCAGAATGCACATTCAAGCTTGGATGACCATTTGGCTCGCTGGTTCGGGTTAAATCAATCCAAGTACCAGTGGGCGCTAGATGACTATTACGAGAGCAAGGGAATGGAAAATGGGGACATGAAAGCGAAGGAACCGTCGAGCAAAGCCCAGAGCGTGTAA

Protein sequence

MPINTESTPPPLIGKIGPYTVFMTPPSTPSPASPPQPVFESPKKVIQPPPVQPPPQQFDKSVSVDTVANGNASVAGFFRNAVSKVQNAHSSLDDHLARWFGLNQSKYQWALDDYYESKGMENGDMKAKEPSSKAQSV

Homology

[Close]

BLAST of CmaCh11G003820 vs. TAIR 10
Match: AT2G18910.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 157.9 bits (398), Expect = 5.7e-39
Identity = 88/138 (63.77%), Postives = 100/138 (72.46%), Query Frame = 0


Query: 1   MPINTE-STPPPLIGKIGPYTVFMTPPSTPSPASPPQPVFESPKKVIQPPPVQPPPQQFD 60
           MPIN + STPPP+IGKIGPYTVFMTPP+TP P   P  V + P   +  PPV PPPQQF 
Sbjct: 1   MPINKDPSTPPPVIGKIGPYTVFMTPPATPKPPESPSAVSQKP---VMAPPVLPPPQQFK 60

Query: 61  KSVSVDTVANGNASVAGFFRNAVSKVQNAHSSLDDHLARWFGLNQSKYQWALDDYYESKG 120
              S D     + SV GFF+NAV+KVQNAHSS+DDHL RWFGLNQSKYQWALD+YYESK 
Sbjct: 61  SVASSDQ----DGSVLGFFKNAVTKVQNAHSSVDDHLVRWFGLNQSKYQWALDEYYESKE 120

Query: 121 MENGDMKAKEPSSKAQSV 138
            +   +KAKE   K QSV
Sbjct: 121 SDMKTVKAKEMPGKVQSV 131

The following BLAST results are available for this feature:

BLAST of CmaCh11G003820 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh11G003820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18910.1	5.7e-39	63.77	hydroxyproline-rich glycoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	PANTHER	PTHR37376	EXPRESSED PROTEIN	coord: 1..125
None	No IPR available	PANTHER	PTHR37376:SF6	BNACNNG30510D PROTEIN	coord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G003820.1	CmaCh11G003820.1	mRNA