CmaCh11G003590 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G003590
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Location	Cma_Chr11: 1786261 .. 1790042 (+)
RNA-Seq Expression	CmaCh11G003590
Synteny	CmaCh11G003590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTATTATTATTATTATTATTTAAAAGAGAAAAAAAAAATTCCTCTCCGTCGAAGCAAGAATCGGAAGACGACGACGTCGCCGCCGCCACTGCCGTGCTAACTACCGTCACCACCGCAGGGAACAAAGAGTATCGAAGAGGATTAAATGAATTACTTGGAGAATGGCGTGTTCATGCCCGAAGATCTCGGCAGGTTTATTTTCTTTTTATTTCTCTATTTTCTGTATCTTTTGAAAATGTTGATCAGCGGGATGAAGGTTTAGGGATTTTTGAATTGGAATTTGACGCTGGAGTTTTGGTGAGGACAGTTGGGGACTTGACGATCTGGTTCCCAGCTACTATGATTCCAGTTCGCCGGAGGGAGTTCTATCGCCATCGGCGGCTTCGAAGAACATAGTATCGGAGAGGAATAGGAGGAGGAAGCTTAATGATAGGCTTTTTGCACTTCGAGCGGTGGTTCCAAATATTAGTAAGGTTAGAATCAAATTTCTGGTGTTCGATTTGATAGTTAATACTTGATAGACCTGTTTTTGTAGTTTTGGAATTTGAAATTAATCGATCGAGAAATGCAATTGAGCAGATGGATAAGGCTTCCATTATTAAAGATGCAATCGATCACATTCAGAAGTTGCGTGAACAAGAGAGGAGGATTGAAACTGAAATTTATGAGCTCGAAGCGGGAAAGTCAAAGAAGAAGATAACGCGGTATGAGTTTGAGCAGGAGGTGCCATTGTTGCATACACCAAAGAGGACTAAAACAGAGCAGTTCAGCTATTACGATTCTTCTGCTACAAGATTTTCTCCCATTGAAGTGCTGGGTGTAAGCTTCCTAATCTCTCTTTTCTTTAAAACCTTCAAGTAATGAATTGATTGGAGATTCTGATGAGATTGGATTGTGAATTGCAGTTAAGTGTAACGTATATGGGGGAAAGAACAATCGTGGTGAGCTTAACATGTTGCAAAAGAGCAGATTCAATGGTTAAACTATGTAAAGTTTTTGAATCACTGAAGCTCAAGATCATCACTGCCAATATCACTGCTGTCTCTGGAAGGCTTTTGAAAACTGTGTTCATCGAGGTAACTAAACTAAACTGAATGAACTATTTTGTTTGATTCTTCCAAAACTAGTCAAATGGGTTCAAAATGCATATAGATGGGACAGTTACATTTTCTCTGAATATAACTATAAGAAGAATGAAATGGACAAAATCTGAAGAGAAAATAAGAAACTCGTGGCCTTGCTACGAAATTGGGTATGTTTCTTTGGTTTTTTCAATCATTGAGATTGAAGACAATTGATCAATTGATCCTCGAAAAAGGAGGAGAGCGAGAGAGATGCTGATTTGTTTTTGCCTTGGTTTCAATATCATGTCTTTTGTTTTGTTTTTGTTTTTGTTTTTGTTTTGTTATAATAATTATGTCGTTTTCTTTGAGCAGTATCTCTGTTATATTGTGCTTTTTGAATATAAAATGTGTTTACCCCATTTTCTTTAAGATATGGAGTATATCAAAATTGTGATATGGCTTTGTGATTGTGTGGGCAGATGAGTGAGACATTTGGGTGCCAAGGGACTGTTTTTGATTGTTTTCAGAAACTGCTTTTTTTTTTTTTATTTTTTTTTTATCACAATTTCTAAAAAGGCATCATTTTTTTTCTTGTGTTACATATTTTGCCAGCAGATTTTTTTTTTTTTAAAGTTTATAACACCATTACTAAATTCAGAGAATATCTGAATTTTATGCAAATTAAACAACAACAACAATAATAATAATAATAAATAATGCTTCGTTTTTAGCAGTTTGGATTTTCATAAATTCTTACTATAATTGGATTATAGTCAAATATTAAAAACACAAATTAGTTTTACTTATATTTTTTTAGTAGAATAAATAAAGTAACCAAGGGCTTAATTTTCAAGAACTAGAAATAAAAGACTATCCTTATGAAATCGGAGTTTATTATTATTATTATAACGTTCTAAACCATTAATGGGCACTCAAATGATAAGCTGTTCAACCAGTTAAGGATAAGATTATAGAGCCATCAAGGAAAGCAAAAGAATGTGTATAATGCAAATAAAGAATTTGTGGGCTCATAGTCAATGGAATCACTTTGTCAAAGTGGAAGATCCACTTGTGATGCAATTTCTGAGGGGTTGGGAGTGATAGCATTTTGGCATTCCATTCTGTGGGTTTTTATCCTTTCTGAAGTTAATTACTTATCTCTCGTAGGCTTTCTTTGTCATGAAGGAGAGATCTATTTAGATATACCAACTCCTATAATAAGCCGAACTCCATGATCTAATTAGAATTATCCTTTGTGGAATTGCAGGCTGGACAAGAGGAGAGAGATCTCTTGAAGATTAAAATAGAAACAGCCCTTGCAGGTCTTAATGATTCCCAAAGCCCCGTGAGTATCTAATCTAAGCCAACAAACCGAAAAACACACACGAGTGAGATCGATGAACACAAACCATCTTAGCCATTTGAAAAATGGTTCCCTCTCCCTGCTCATAGTTTTCCATTTTTGCTCTTTATTGTGGTTGTCAAGTCACATAAAGTGTGTTTCATAGATCAAGAGTTCTTCAAGTGGTTCATAAAATTCTTTTCTTGGTCCTAAGAGGGAACAACCATTTGGTTTGTTGGTTCGAAATCACAAATCTCGAGGTTTTGAAATTCAAGGAGTTAGTATGCTTTTAGATTGCATTTTCACAAATCTCGAGGTTCGAAATTCACAAATCTCGAGGTTTAGGATTAGTATGCTTTTAGATTGCATTTTCCAATCTGTACTTGATAATTTGATTTTGAAGCTTATCAATAGTTTGATCAATTTTGTTTGAAGTAATTTTTCTATGAGATAGATGGCTGAACATACTCCGGAATGAACTGAACTCCTCCTCGTGGTTATCACTCTCATATACTAACATCAAAGCAAGACGGATAAAGAGAATTGAAAAAGAAGATGGAATGATTAATATTGAAGGGGCAGTCAAATGAGAGTTTGAGTATTGAGAACGTGGGTCTGATACCCATGTTCGCAAATCAATCAGAGAAAATGTTCCCCAATTCCCAGCTCCCATTCATATCATGTGTGGCCTCCTGTCTCCCCACCACCTCTCTCTTCCCCTACCACTATCACACCCTCTCGGGTTGCATTTCCTCACTCCCTAAAGTTTCCAAACATGGAGATAGGTAGGGGAGAAAGTTTTTGGATTGAGAGCTTTGCAAATGGGTCACTATTATTGAAAAGCAAAAGCTATTTAGTTTACCAATGCTAAATAGTTCATTGGTGTTGGAATACGTCTTCATCAGACAGAATCATTCCAAAATGTCAGATGAAATACCAACACACGGGAAGGAGATGGATTCTATTGCTTTGAAGTTTTAACTGGTCTTGCTATGGTGACCAACTAAATCAGAATAGAACATTTTCTAATCTTCAAAGAAAAGAGCGCAAGAGTTTGAAACCTATTCACCAAATTGAACCAACATTCCAACTCAATTTTACCAATAAAAAGTAATCTTTACCTGCACTTCAAGCTGTTTAGACCCACCATTACCACCATCCATCAGCATTCCCAACTTTGCTACACCACAGATGTGCGTCAACTCGAAGACACAGAACTAAGATAGCATTGTTGAAACTGCTCATTCTTCAACATAGAAGGAACAGAGTTGCAAAACGTTCTAATGTAGACAGATAAAGCGTACATATATGTATATAAACCATGCAAGTTAGTAGTTTTTAGCATGCTACCTCCGTGGAGCACATGAATTACAT

mRNA sequence

TATTATTATTATTATTATTATTTAAAAGAGAAAAAAAAAATTCCTCTCCGTCGAAGCAAGAATCGGAAGACGACGACGTCGCCGCCGCCACTGCCGTGCTAACTACCGTCACCACCGCAGGGAACAAAGAGTATCGAAGAGGATTAAATGAATTACTTGGAGAATGGCGTGTTCATGCCCGAAGATCTCGGCAGTTGGGGACTTGACGATCTGGTTCCCAGCTACTATGATTCCAGTTCGCCGGAGGGAGTTCTATCGCCATCGGCGGCTTCGAAGAACATAGTATCGGAGAGGAATAGGAGGAGGAAGCTTAATGATAGGCTTTTTGCACTTCGAGCGGTGGTTCCAAATATTAGTAAGATGGATAAGGCTTCCATTATTAAAGATGCAATCGATCACATTCAGAAGTTGCGTGAACAAGAGAGGAGGATTGAAACTGAAATTTATGAGCTCGAAGCGGGAAAGTCAAAGAAGAAGATAACGCGGTATGAGTTTGAGCAGGAGGTGCCATTGTTGCATACACCAAAGAGGACTAAAACAGAGCAGTTCAGCTATTACGATTCTTCTGCTACAAGATTTTCTCCCATTGAAGTGCTGGGTTTAAGTGTAACGTATATGGGGGAAAGAACAATCGTGGTGAGCTTAACATGTTGCAAAAGAGCAGATTCAATGGTTAAACTATGTAAAGTTTTTGAATCACTGAAGCTCAAGATCATCACTGCCAATATCACTGCTGTCTCTGGAAGGCTTTTGAAAACTGTGTTCATCGAGGCTGGACAAGAGGAGAGAGATCTCTTGAAGATTAAAATAGAAACAGCCCTTGCAGGTCTTAATGATTCCCAAAGCCCCGTGAGTATCTAATCTAAGCCAACAAACCGAAAAACACACACGAGTGAGATCGATGAACACAAACCATCTTAGCCATTTGAAAAATGGTTCCCTCTCCCTGCTCATAGTTTTCCATTTTTGCTCTTTATTGTGGTTGTCAAGTCACATAAAGTGTGTTTCATAGATCAAGAGTTCTTCAAGTGGTTCATAAAATTCTTTTCTTGGTCCTAAGAGGGAACAACCATTTGGTTTGTTGGTTCGAAATCACAAATCTCGAGGTTTTGAAATTCAAGGAGTTAGTATGCTTTTAGATTGCATTTTCACAAATCTCGAGGTTCGAAATTCACAAATCTCGAGGTTTAGGATTAGTATGCTTTTAGATTGCATTTTCCAATCTGTACTTGATAATTTGATTTTGAAGCTTATCAATAGTTTGATCAATTTTGTTTGAAGTAATTTTTCTATGAGATAGATGGCTGAACATACTCCGGAATGAACTGAACTCCTCCTCGTGGTTATCACTCTCATATACTAACATCAAAGCAAGACGGATAAAGAGAATTGAAAAAGAAGATGGAATGATTAATATTGAAGGGGCAGTCAAATGAGAGTTTGAGTATTGAGAACGTGGGTCTGATACCCATGTTCGCAAATCAATCAGAGAAAATGTTCCCCAATTCCCAGCTCCCATTCATATCATGTGTGGCCTCCTGTCTCCCCACCACCTCTCTCTTCCCCTACCACTATCACACCCTCTCGGGTTGCATTTCCTCACTCCCTAAAGTTTCCAAACATGGAGATAGGTAGGGGAGAAAGTTTTTGGATTGAGAGCTTTGCAAATGGGTCACTATTATTGAAAAGCAAAAGCTATTTAGTTTACCAATGCTAAATAGTTCATTGGTGTTGGAATACGTCTTCATCAGACAGAATCATTCCAAAATGTCAGATGAAATACCAACACACGGGAAGGAGATGGATTCTATTGCTTTGAAGTTTTAACTGGTCTTGCTATGGTGACCAACTAAATCAGAATAGAACATTTTCTAATCTTCAAAGAAAAGAGCGCAAGAGTTTGAAACCTATTCACCAAATTGAACCAACATTCCAACTCAATTTTACCAATAAAAAGTAATCTTTACCTGCACTTCAAGCTGTTTAGACCCACCATTACCACCATCCATCAGCATTCCCAACTTTGCTACACCACAGATGTGCGTCAACTCGAAGACACAGAACTAAGATAGCATTGTTGAAACTGCTCATTCTTCAACATAGAAGGAACAGAGTTGCAAAACGTTCTAATGTAGACAGATAAAGCGTACATATATGTATATAAACCATGCAAGTTAGTAGTTTTTAGCATGCTACCTCCGTGGAGCACATGAATTACAT

Coding sequence (CDS)

ATGAATTACTTGGAGAATGGCGTGTTCATGCCCGAAGATCTCGGCAGTTGGGGACTTGACGATCTGGTTCCCAGCTACTATGATTCCAGTTCGCCGGAGGGAGTTCTATCGCCATCGGCGGCTTCGAAGAACATAGTATCGGAGAGGAATAGGAGGAGGAAGCTTAATGATAGGCTTTTTGCACTTCGAGCGGTGGTTCCAAATATTAGTAAGATGGATAAGGCTTCCATTATTAAAGATGCAATCGATCACATTCAGAAGTTGCGTGAACAAGAGAGGAGGATTGAAACTGAAATTTATGAGCTCGAAGCGGGAAAGTCAAAGAAGAAGATAACGCGGTATGAGTTTGAGCAGGAGGTGCCATTGTTGCATACACCAAAGAGGACTAAAACAGAGCAGTTCAGCTATTACGATTCTTCTGCTACAAGATTTTCTCCCATTGAAGTGCTGGGTTTAAGTGTAACGTATATGGGGGAAAGAACAATCGTGGTGAGCTTAACATGTTGCAAAAGAGCAGATTCAATGGTTAAACTATGTAAAGTTTTTGAATCACTGAAGCTCAAGATCATCACTGCCAATATCACTGCTGTCTCTGGAAGGCTTTTGAAAACTGTGTTCATCGAGGCTGGACAAGAGGAGAGAGATCTCTTGAAGATTAAAATAGAAACAGCCCTTGCAGGTCTTAATGATTCCCAAAGCCCCGTGAGTATCTAA

Protein sequence

MNYLENGVFMPEDLGSWGLDDLVPSYYDSSSPEGVLSPSAASKNIVSERNRRRKLNDRLFALRAVVPNISKMDKASIIKDAIDHIQKLREQERRIETEIYELEAGKSKKKITRYEFEQEVPLLHTPKRTKTEQFSYYDSSATRFSPIEVLGLSVTYMGERTIVVSLTCCKRADSMVKLCKVFESLKLKIITANITAVSGRLLKTVFIEAGQEERDLLKIKIETALAGLNDSQSPVSI

Homology

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BLAST of CmaCh11G003590 vs. ExPASy Swiss-Prot
Match: Q2HIV9 (Transcription factor bHLH35 OS=Arabidopsis thaliana OX=3702 GN=BHLH35 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 9.6e-55
Identity = 126/237 (53.16%), Postives = 169/237 (71.31%), Query Frame = 0


Query: 2   NYLENGVFMP-EDL---GSWGLDDLVPSYYDSSSPEGVLSPSAASKNIVSERNRRRKLND 61
           NY E   F+  ED     SW L++ +   YDSSSP+G  S S ASKNIVSERNRR+KLN 
Sbjct: 11  NYWEPSSFLQNEDFEYDRSWPLEEAISGSYDSSSPDGAAS-SPASKNIVSERNRRQKLNQ 70

Query: 62  RLFALRAVVPNISKMDKASIIKDAIDHIQKLREQERRIETEIYELEAGKSKKKITRYEFE 121
           RLFALR+VVPNI+KMDKASIIKDAI +I+ L+ +E+++E EI ELE+          +F+
Sbjct: 71  RLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLEAEIRELESTPKSSLSFSKDFD 130

Query: 122 QEVPLLHTPKRTKTEQFSYYDSSATRFSPIEVLGLSVTYMGERTIVVSLTCCKRADSMVK 181
           +++ +  T K+ K         S +  S IEVL L VT+MGERT+VVS+TC KR D+MVK
Sbjct: 131 RDLLVPVTSKKMKQL------DSGSSTSLIEVLELKVTFMGERTMVVSVTCNKRTDTMVK 190

Query: 182 LCKVFESLKLKIITANITAVSGRLLKTVFIEAGQEERDLLKIKIETALAGLNDSQSP 235
           LC+VFESL LKI+T+N+T+ SG +  TVFIEA +EE+++L++KIET +   N++QSP
Sbjct: 191 LCEVFESLNLKILTSNLTSFSGMIFHTVFIEADEEEQEVLRLKIETGIGAYNETQSP 240

[Close]

BLAST of CmaCh11G003590 vs. ExPASy Swiss-Prot
Match: Q700E3 (Transcription factor bHLH27 OS=Arabidopsis thaliana OX=3702 GN=BHLH27 PE=2 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 8.8e-40
Identity = 95/216 (43.98%), Postives = 144/216 (66.67%), Query Frame = 0


Query: 2   NYLENGVFMPE---DLGSWGLDDLVPSYYDSSSPEGVLSPSAASKNIVSERNRRRKLNDR 61
           NY E  +F      +  SW +++      +SSSP+G  +  A+SKN+VSERNRR+KLN R
Sbjct: 10  NYWETTMFFQNQELEFDSWPMEEAFSGSGESSSPDGAATSPASSKNVVSERNRRQKLNQR 69

Query: 62  LFALRAVVPNISKMDKASIIKDAIDHIQKLREQERRIETEIYELEAGKS--KKKITRYE- 121
           LFALR+VVPNISK+DKAS+IKD+ID++Q+L +QE+ +E EI ELE+  +  +  +  Y+ 
Sbjct: 70  LFALRSVVPNISKLDKASVIKDSIDYMQELIDQEKTLEAEIRELESRSTLLENPVRDYDC 129

Query: 122 --FEQEVPLLHTPKRTKTEQFSYYD-SSATRFSPIEVLGLSVTYMGERTIVVSLTCCKRA 181
              E  +         ++++F   D S+  +  PIEVL + VT+MGE+T+VV +TC K+ 
Sbjct: 130 NFAETHLQDFSDNNDMRSKKFKQMDYSTRVQHYPIEVLEMKVTWMGEKTVVVCITCSKKR 189

Query: 182 DSMVKLCKVFESLKLKIITANITAVSGRLLKTVFIE 209
           ++MV+LCKV ESL L I+T N ++ + RL  T+F++
Sbjct: 190 ETMVQLCKVLESLNLNILTTNFSSFTSRLSTTLFLQ 225

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BLAST of CmaCh11G003590 vs. ExPASy Swiss-Prot
Match: Q0JEB7 (Transcription factor BHLH6 OS=Oryza sativa subsp. japonica OX=39947 GN=BHLH6 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.3e-32
Identity = 101/292 (34.59%), Postives = 156/292 (53.42%), Query Frame = 0


Query: 3   YLENGVFMPEDLGSWGLDDLVPSYYDSSSPEGVLSPSA---------------------- 62
           YLE+     E+L S  L     S Y+SSSP+G  S SA                      
Sbjct: 20  YLES-----EELDSMYLPTQDDSNYESSSPDGSHSSSAPAPAAVGGDAAAAVAGSGGGMT 79

Query: 63  ----------------ASKNIVSERNRRRKLNDRLFALRAVVPNISKMDKASIIKDAIDH 122
                           A+KNI+ ER+RRRKLN++L+ALR+VVPNI+KMDKASIIKDAI++
Sbjct: 80  TMMMGGGGGGGDDAGGANKNILMERDRRRKLNEKLYALRSVVPNITKMDKASIIKDAIEY 139

Query: 123 IQKLREQERRIETEIYELEAGKSKKKI-------------TRYEFEQEVPLLHTPKRTKT 182
           IQ+L+ +E+++  E+  LE+  +                   +E+    P   + +  K 
Sbjct: 140 IQRLQAEEQQMLREVAALESAAAASAAPAAANPFAGLGADEEHEYGHHHPSSSSERTKKV 199

Query: 183 EQFSYYDS-------SATRFSPIEVLGLSVTYMGERTIVVSLTCCKRADSMVKLCKVFES 237
           ++     S       +A    P+E+  L V+ +G+R +VVS+TC KR D+M ++C+  E 
Sbjct: 200 KRALSVSSISDALLAAAAPAPPVEIQELRVSEVGDRVLVVSVTCSKRRDAMARVCRALEE 259

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BLAST of CmaCh11G003590 vs. ExPASy Swiss-Prot
Match: Q0V7X4 (Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR OS=Arabidopsis thaliana OX=3702 GN=FIT PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.5e-12
Identity = 52/158 (32.91%), Postives = 91/158 (57.59%), Query Frame = 0


Query: 42  SKNIVSERNRRRKLNDRLFALRAVVPNISKMDKASIIKDAIDHIQKLREQERRIETEIYE 101
           S+ ++SER RR ++ D+L+ALR++VPNI+KMDKASI+ DA+ ++Q+L+ Q ++++++I  
Sbjct: 130 SRTLISERRRRGRMKDKLYALRSLVPNITKMDKASIVGDAVLYVQELQSQAKKLKSDIAG 189

Query: 102 LEAGKSKKKITRYEFEQEVPLLHTPKRTKTEQFSYYDSSATRFSPIEVLGLSVTYMGERT 161
           LEA  S      Y+        H P   KT+ F   +  A++    +++ + V  + E+ 
Sbjct: 190 LEA--SLNSTGGYQ-------EHAPDAQKTQPFRGINPPASK----KIIQMDVIQVEEKG 249

Query: 162 IVVSLTCCKRADSMVKLCKVFESL-KLKIITANITAVS 199
             V L C K       L K  ESL   ++  +N+++ S
Sbjct: 250 FYVRLVCNKGEGVAPSLYKSLESLTSFQVQNSNLSSPS 274

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BLAST of CmaCh11G003590 vs. ExPASy Swiss-Prot
Match: Q9LSE2 (Transcription factor ICE1 OS=Arabidopsis thaliana OX=3702 GN=SCRM PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.7e-12
Identity = 54/184 (29.35%), Postives = 93/184 (50.54%), Query Frame = 0


Query: 42  SKNIVSERNRRRKLNDRLFALRAVVPNISKMDKASIIKDAIDHIQKLREQERRIETEIYE 101
           +KN+++ER RR+KLNDRL+ LR+VVP ISKMD+ASI+ DAID++++L ++   +  E+  
Sbjct: 306 AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELES 365

Query: 102 LEAGKSKKKITRYEFEQEVPLLHTPKRTKTEQFSYYDSSATRFSPIEVLGLSVTYMGERT 161
              G      + +      PL  TP+            S+      +   + V     R 
Sbjct: 366 TPPGSLPPTSSSFH-----PLTPTPQTLSCRVKEELCPSSLPSPKGQQARVEVRLREGRA 425

Query: 162 IVVSLTCCKRADSMVKLCKVFESLKLKIITANITAVSGRLLKTVFIEAGQEERDLLKIKI 221
           + + + C +R   ++   K  ++L L +  A I+  +G  L     E  QE +++L  +I
Sbjct: 426 VNIHMFCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALDVFRAEQCQEGQEILPDQI 484

Query: 222 ETAL 226
           +  L
Sbjct: 486 KAVL 484

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BLAST of CmaCh11G003590 vs. TAIR 10
Match: AT5G57150.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 216.1 bits (549), Expect = 3.1e-56
Identity = 124/236 (52.54%), Postives = 168/236 (71.19%), Query Frame = 0


Query: 2   NYLENGVFMPE---DLGSWGLDDLVPSYYDSSSPEGVLSPSAASKNIVSERNRRRKLNDR 61
           NY E   F+     +  SW L++ +   YDSSSP+G  S S ASKNIVSERNRR+KLN R
Sbjct: 11  NYWEPSSFLQNEDFEYDSWPLEEAISGSYDSSSPDGAAS-SPASKNIVSERNRRQKLNQR 70

Query: 62  LFALRAVVPNISKMDKASIIKDAIDHIQKLREQERRIETEIYELEAGKSKKKITRYEFEQ 121
           LFALR+VVPNI+KMDKASIIKDAI +I+ L+ +E+++E EI ELE+          +F++
Sbjct: 71  LFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLEAEIRELESTPKSSLSFSKDFDR 130

Query: 122 EVPLLHTPKRTKTEQFSYYDSSATRFSPIEVLGLSVTYMGERTIVVSLTCCKRADSMVKL 181
           ++ +  T K+ K         S +  S IEVL L VT+MGERT+VVS+TC KR D+MVKL
Sbjct: 131 DLLVPVTSKKMKQL------DSGSSTSLIEVLELKVTFMGERTMVVSVTCNKRTDTMVKL 190

Query: 182 CKVFESLKLKIITANITAVSGRLLKTVFIEAGQEERDLLKIKIETALAGLNDSQSP 235
           C+VFESL LKI+T+N+T+ SG +  TVFIEA +EE+++L++KIET +   N++QSP
Sbjct: 191 CEVFESLNLKILTSNLTSFSGMIFHTVFIEADEEEQEVLRLKIETGIGAYNETQSP 239

[Close]

BLAST of CmaCh11G003590 vs. TAIR 10
Match: AT5G57150.3 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 187.2 bits (474), Expect = 1.5e-47
Identity = 114/211 (54.03%), Postives = 148/211 (70.14%), Query Frame = 0


Query: 2   NYLENGVFMP-EDL---GSWGLDDLVPSYYDSSSPEGVLSPSAASKNIVSERNRRRKLND 61
           NY E   F+  ED     SW L++ +   YDSSSP+G  S S ASKNIVSERNRR+KLN 
Sbjct: 11  NYWEPSSFLQNEDFEYDRSWPLEEAISGSYDSSSPDGAAS-SPASKNIVSERNRRQKLNQ 70

Query: 62  RLFALRAVVPNISKMDKASIIKDAIDHIQKLREQERRIETEIYELEAGKSKKKITRYEFE 121
           RLFALR+VVPNI+KMDKASIIKDAI +I+ L+ +E+++E EI ELE+          +F+
Sbjct: 71  RLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLEAEIRELESTPKSSLSFSKDFD 130

Query: 122 QEVPLLHTPKRTKTEQFSYYDSSATRFSPIEVLGLSVTYMGERTIVVSLTCCKRADSMVK 181
           +++ +  T K+ K         S +  S IEVL L VT+MGERT+VVS+TC KR D+MVK
Sbjct: 131 RDLLVPVTSKKMKQL------DSGSSTSLIEVLELKVTFMGERTMVVSVTCNKRTDTMVK 190

Query: 182 LCKVFESLKLKIITANITAVSGRLLKTVFIE 209
           LC+VFESL LKI+T+N+T+ SG +  TVFIE
Sbjct: 191 LCEVFESLNLKILTSNLTSFSGMIFHTVFIE 214

[Close]

BLAST of CmaCh11G003590 vs. TAIR 10
Match: AT5G57150.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 187.2 bits (474), Expect = 1.5e-47
Identity = 114/211 (54.03%), Postives = 148/211 (70.14%), Query Frame = 0


Query: 2   NYLENGVFMP-EDL---GSWGLDDLVPSYYDSSSPEGVLSPSAASKNIVSERNRRRKLND 61
           NY E   F+  ED     SW L++ +   YDSSSP+G  S S ASKNIVSERNRR+KLN 
Sbjct: 11  NYWEPSSFLQNEDFEYDRSWPLEEAISGSYDSSSPDGAAS-SPASKNIVSERNRRQKLNQ 70

Query: 62  RLFALRAVVPNISKMDKASIIKDAIDHIQKLREQERRIETEIYELEAGKSKKKITRYEFE 121
           RLFALR+VVPNI+KMDKASIIKDAI +I+ L+ +E+++E EI ELE+          +F+
Sbjct: 71  RLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLEAEIRELESTPKSSLSFSKDFD 130

Query: 122 QEVPLLHTPKRTKTEQFSYYDSSATRFSPIEVLGLSVTYMGERTIVVSLTCCKRADSMVK 181
           +++ +  T K+ K         S +  S IEVL L VT+MGERT+VVS+TC KR D+MVK
Sbjct: 131 RDLLVPVTSKKMKQL------DSGSSTSLIEVLELKVTFMGERTMVVSVTCNKRTDTMVK 190

Query: 182 LCKVFESLKLKIITANITAVSGRLLKTVFIE 209
           LC+VFESL LKI+T+N+T+ SG +  TVFIE
Sbjct: 191 LCEVFESLNLKILTSNLTSFSGMIFHTVFIE 214

[Close]

BLAST of CmaCh11G003590 vs. TAIR 10
Match: AT5G57150.4 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 187.2 bits (474), Expect = 1.5e-47
Identity = 114/211 (54.03%), Postives = 148/211 (70.14%), Query Frame = 0


Query: 2   NYLENGVFMP-EDL---GSWGLDDLVPSYYDSSSPEGVLSPSAASKNIVSERNRRRKLND 61
           NY E   F+  ED     SW L++ +   YDSSSP+G  S S ASKNIVSERNRR+KLN 
Sbjct: 11  NYWEPSSFLQNEDFEYDRSWPLEEAISGSYDSSSPDGAAS-SPASKNIVSERNRRQKLNQ 70

Query: 62  RLFALRAVVPNISKMDKASIIKDAIDHIQKLREQERRIETEIYELEAGKSKKKITRYEFE 121
           RLFALR+VVPNI+KMDKASIIKDAI +I+ L+ +E+++E EI ELE+          +F+
Sbjct: 71  RLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLEAEIRELESTPKSSLSFSKDFD 130

Query: 122 QEVPLLHTPKRTKTEQFSYYDSSATRFSPIEVLGLSVTYMGERTIVVSLTCCKRADSMVK 181
           +++ +  T K+ K         S +  S IEVL L VT+MGERT+VVS+TC KR D+MVK
Sbjct: 131 RDLLVPVTSKKMKQL------DSGSSTSLIEVLELKVTFMGERTMVVSVTCNKRTDTMVK 190

Query: 182 LCKVFESLKLKIITANITAVSGRLLKTVFIE 209
           LC+VFESL LKI+T+N+T+ SG +  TVFIE
Sbjct: 191 LCEVFESLNLKILTSNLTSFSGMIFHTVFIE 214

[Close]

BLAST of CmaCh11G003590 vs. TAIR 10
Match: AT4G29930.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 182.6 bits (462), Expect = 3.8e-46
Identity = 104/238 (43.70%), Postives = 158/238 (66.39%), Query Frame = 0


Query: 2   NYLENGVFMPE---DLGSWGLDDLVPSYYDSSSPEGVLSPSAASKNIVSERNRRRKLNDR 61
           NY E  +F      +  SW +++      +SSSP+G  +  A+SKN+VSERNRR+KLN R
Sbjct: 10  NYWETTMFFQNQELEFDSWPMEEAFSGSGESSSPDGAATSPASSKNVVSERNRRQKLNQR 69

Query: 62  LFALRAVVPNISKMDKASIIKDAIDHIQKLREQERRIETEIYELEAGKS--KKKITRYE- 121
           LFALR+VVPNISK+DKAS+IKD+ID++Q+L +QE+ +E EI ELE+  +  +  +  Y+ 
Sbjct: 70  LFALRSVVPNISKLDKASVIKDSIDYMQELIDQEKTLEAEIRELESRSTLLENPVRDYDC 129

Query: 122 --FEQEVPLLHTPKRTKTEQFSYYD-SSATRFSPIEVLGLSVTYMGERTIVVSLTCCKRA 181
              E  +         ++++F   D S+  +  PIEVL + VT+MGE+T+VV +TC K+ 
Sbjct: 130 NFAETHLQDFSDNNDMRSKKFKQMDYSTRVQHYPIEVLEMKVTWMGEKTVVVCITCSKKR 189

Query: 182 DSMVKLCKVFESLKLKIITANITAVSGRLLKTVFIEAGQEERDLLKIKIETALAGLND 231
           ++MV+LCKV ESL L I+T N ++ + RL  T+F++A +EE   ++ KI+ A+A  ND
Sbjct: 190 ETMVQLCKVLESLNLNILTTNFSSFTSRLSTTLFLQADEEESSAVEAKIQMAIAAYND 247

The following BLAST results are available for this feature:

BLAST of CmaCh11G003590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2HIV9	9.6e-55	53.16	Transcription factor bHLH35 OS=Arabidopsis thaliana OX=3702 GN=BHLH35 PE=2 SV=1	[more]
Q700E3	8.8e-40	43.98	Transcription factor bHLH27 OS=Arabidopsis thaliana OX=3702 GN=BHLH27 PE=2 SV=1	[more]
Q0JEB7	2.3e-32	34.59	Transcription factor BHLH6 OS=Oryza sativa subsp. japonica OX=39947 GN=BHLH6 PE=...	[more]
Q0V7X4	4.5e-12	32.91	Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR OS=Ar...	[more]
Q9LSE2	7.7e-12	29.35	Transcription factor ICE1 OS=Arabidopsis thaliana OX=3702 GN=SCRM PE=1 SV=1	[more]

BLAST of CmaCh11G003590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57150.1	3.1e-56	52.54	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G57150.3	1.5e-47	54.03	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G57150.2	1.5e-47	54.03	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G57150.4	1.5e-47	54.03	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G29930.1	3.8e-46	43.70	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 78..105
None	No IPR available	PANTHER	PTHR31945:SF26	TRANSCRIPTION FACTOR BHLH35	coord: 8..231
None	No IPR available	PANTHER	PTHR31945	TRANSCRIPTION FACTOR SCREAM2-RELATED	coord: 8..231
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 45..94 e-value: 2.3E-14 score: 63.7
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 46..88 e-value: 2.9E-10 score: 40.0
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 39..88 score: 16.26585
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 37..104 e-value: 4.2E-15 score: 57.4
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 40..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G003590.1	CmaCh11G003590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding