CmaCh11G003240 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G003240
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	zinc finger CCHC domain-containing protein 7-like isoform X2
Location	Cma_Chr11: 1617572 .. 1624982 (+)
RNA-Seq Expression	CmaCh11G003240
Synteny	CmaCh11G003240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGACTACGGCTTCTTTAACTTGACGGAACGACATGTCGTCGAATTGTTCGAGAGAGAGAGAGAGATAGTAGTAGTATAAACCGATTGTGTGGAAACCCTAGCGCCACCTCAAAGTTGAAGAAAAAGTTGCCAAGTTTGCTTAGTTCTTCTCCTCACCATTCAATTAGGGCTTCTTACCAGATTGCAGTTTGATTCAGTTTCGAATTTGGAGGATGGGGAGGAGAGGCAAGCAGAAGAAGTTCAAGTTCGAGGAAGACGAAGACGAAGACGAACTGAAAGAGAGGGCTTCGAAGACTACCGTTGTGGTGAGCAGTGACGACGAAGAGGCCAATGAAGATTTCAGCCTCAAGATTGTTGAGAAGGCTTTGAGATTGCGCTCCGGAAAGTTGGTCCGCTTTCCCGACCATAATCAGGTTGGTAACCGTGAACGGAGTGGTAATGGAGATGTTGACGGTGTTGGAGTTGTCGAAGTGTCTTCGTCGCCTTTGGGGGATGCTGACACTGGTGCCGGAACTAGCGGAACCAGCGTCGATGTCATCGCTGCTGCTTCTGAGGCGCGGGAATTGGGGAGTAAGAAGTCAGCGAAGAAGAGGAAGAGGAAAGTTAAGAAGCTGGAAACTGAAAAGCCCCCCGTGAGTATTTTTCTACTTCCGCTTTAGTCTTTTTGAAAGAATCTAGTGGGAGGGAATGAGATATAGAAGGATTGTTCATTTTCTAGGACATTTACACGGCTTAAGAGACGGGTTCTTCAGTTCTGTTGATGACACGACGACTGTGGCGAGAAAGAAATACTAAACTCGGTCTAGGAGGGCTCATTGAACTTAAAACTGTGTACTTAGGGAAATTTTGCCTGCTTTTGTGGTTGATGGAAAACAAAATATTTGATAATATTACACGAGTTTCAAAGAACAAACCATCTTAAATTGCTATCCAGATATTGTATTTCCTTTCCTCTAATCTGATAAAAAGGATCGTGGGGTTTGGCTATTTCTCATTGTCTTGCTGCTTCCTTTGATTTTAGGTGGTTGTCACAGAAGGAGAGAAAATCGATACAATTCCATTGATAGATCAAGTTGATTCGGAGGAACCAAAAATTACTGAAATCGAGACAACTCCATTGATAGATCAAGTTGATTCGGAGGAACCAAACATTACTGACACAACTAATAATAACGTGTTTAGGAAACTTCTTGTGAGTCCCTTTAACTTCTCTGAATTACCGTTAAGGAAAACTGATGTTTGTGGAGGCTTAGTTTTGTATCTCTTACATATTATTCTCCCAGCGTGGACCAAGATACTTTGACCCTCCAGATAGTTGGGGAGCGTGCTATAATTGTGGTGAGGAAGGTCATAATGCTGTCAGTTGCACATCAGCTAAACGGAAGAAACCATGCTTTGTCTGTGGAAGTCTGGAGCACAATGCAAGGAGTTGCTTAAAGGTCAGGAAGATACACAATCTATCTGCATCTTACTTCCCTCTGTTCTTCTTTTCTTACACCTGTCCTAGATGCTTCAAACTTTTCATTTGGTGGGTGGGGGTGGGGGGTGTTGTGGAGGGGTGTTCCTCAAACAGTCTGGCGCTTGAAGTGCAAGAATTCTCTTATATGGAGATGTGTTGTTCTCAATGTGGTATCCTTATATCCATGCATACCTTTTTTTTTTTTTTTTTTAATGAAAATTAGAAATTATACTCTTTATCTAATATCTTTGTTGCTGAGGTAAATTCTTTTTACATTTTTAATGTCTCCATAGTCCTCTGGTCTGAAATCCATATTCCTCATTCTGAGGCTAGAATATGTTTATTGGCTTTCTTATGATCAATCTTTATCCAGTTTATTCACAATCAACCCGAGTGTCTCACAGTTTTGTAATATTTTCTTCTTCTATGTTCTCCTGTTTCTTGCTCATTCCGATTTCATTAAAATTAAAAACCTACTCCTTACTATTCCCAGGCACGAGACTGCTATATTTGCAACAAAGTTGGGCATCGTGCAAAAGACTGTCCAGAGAAGCATTTGAAGGTTTCTTCAAGCTCAAAAATATGTTTAAAATGTGGAGATCCTGGGCATGATATGTTTTCTTGCCAAAGTAGTTATCCAGATGATGATCTCAAGGTCCTAATATAGTGTACTTTTTTGGTTCTTTTCCAGAGTTATTTTGCATGCTGTATCATTTTTCTAAACGTGTCTTGTAAAACTTTTTTTTTCCAGAACATACAATGCTACATTTGTAAGAAATTAGGCCACTTATGTTGTGTGAATTCCACCAGCGACACTTCAGTAGACATTTCCTGCTATAAATGTGGACAGGCTGGACATACTGGTCTGGTAAGTCCTCTATGTTCATATGTCCTATCTGACTGTACGATGTTCACATGATACTCGTATCACCTTTCATTTTCCATTTAAGACGTTCTCTTGTTTTGTTTGCGTATTACTTTTGTGTTTTATATATATATATATATATATAAAAGTTTGTCTTGCTTTTATATGCAATTGCCCACTTGTTTTGCTCTCACGCTGGCTGGCAGTAATAATCAGCAAATTTGGCGGCAGTTCTGGATTTTTCTGATTTTTGAGCATTGACAAATTTCTAGATTGCTGGACTTATGTATGACTGTATTTTCTTGCGCAAGTCAAATTATTGGGATTAATGAGTTGCTAATGTATGCTTGTAATTAAAGAGTTCATTGTTTAGTGAGTCAACATGTGAGAAAGTAGGAGAGGGGGCCAATATTGGCAGGGTCTATAGTGTTGCTTTCACTTATTATTGTTGTATGTCTCAGTACATGCGAGCAAAGAATATTTAAATACAGGAACTTGTAATCACTCGAACCTTGTTGACAAGAGAGCTCATTCCTTTTAAATTAAGGTCCTTGCTTCTAAGTTTATTGCACATGGTTGATTAATCTTTTGGGCTGTGTGTATGTGAATCTACAGGCATGCTCGAGATTACGTGGGGAAGCCTCTGCTGCTGTATCAGCCAGCTCATGCTATAGATGTGGTGAAGAAGGGCATTTTGCCCGTGAGTGTACAAGTTCCGCCAAGGTAGATAAAAAAGCTTACATATTGGCTTATATTTTTCAACAAATAATAAGGAGAAAATATTTATTTTGATAGCCATTTGGTTTTTGGTTATGATTATTAATCTTATAAATAATACGTGCACTTGTGAGGTTTTTTGTTTTGTTGTCTATGTTTTATATATGTTTTCAAAAACCAAGCCTAAGCTTTGAAAACTTAAAAAAGTTGTTTCACAAACTTATTTTTGTTTTGGAATTTGACTAAGAATTTTAAGGATTTCTTAAGGAAGATGAAACCCCCTTATAGAGAAATGGTGATAAAACAAGCACAATTTTTAAAAATAAAAAACCAAGGACTAAGGCCTTGTTTGACAACCATTTAGCTTTTGGTTTTTGGCATTTGAAAATTGAGCTTATAAATACTATTCCCATTTATCGGATTTGTTGATTTTTAAGAATCCAGACAATGTTTGAAAACTTAACATAATAGTTTTCAAAAAATTGTATTTTTGTAGTATTTGGATAAGAAAAGTAAGAAAGATTAAATCCATTGTAGAGAAATGATAAGATAATAAGCACAATTTTAAAAGTCCAGAGGCAAAAATAAATGTTTTTATAAACAGTGTCTATACTGAATTTATATACTTCATGGACCTTGCTCAGGGTGGCAAGAAGAATCGTGAGGAAGCCTCTGGTGCTGCATCACCTAGCCCATGCTATAGATGTGGTGAAGAAGGGCATTTTGCCCGTGAATGCATTAGTTCCGCCAAGGTAGACAAAAAAGCAGGGCCTTTTGTCCGTGAATGCACAATTTCTGCCAAGGTAGATAAAAAAAGCTTACATATCGGTTTTTGTTTTTTGGTTTTTGGTTTATGATAATTTAGCTTATGAATAGTACTTTATGAGGTTTTTTGTTTTGTTGTCTAACTTTTTACTTATGTTATAAAAAACCAAGCCTAAGTTTTTAAAACTAAAAAAAACAGTTTTAAAAACTTATTTTTTGGAATGTGACTAAGAATTCAAATAATTTCTTAAGAAAGATAAAACCCCCTTATAGAGAAATGATGTAAAATAAGCACAATTTTCAAAAACCAAAAACAAAAGTCCCATTCACAACAATTTAGTTCATGGTTTTTTGTATTTGAAACTTGAGCCTATAAATACTATTTCCATTTATGGGTTTGGTTGTTTACTTTTTATGTGTTTTAAAAAATCAAGTCAACTTTTAAAAACGTAATACAAAAGTTTTCAAAAACTTTGTTAGAATTTGAAAACTTAAAACAGTAGTTTAAAGAACTCTTGAAGCCTTAATACTACAGTAACAAAGATGAAATCCATTGTAGAGAAATGATAAGAAAACAAGCACAATTTTAAAAAATCAGAAATAATAAACTAAATGATTATTGAACAGTTCCATATACTGAATTTATACTTTATGGAGCTTGCTCAGGGCGGCAAGAAGAATCGGGAGGATGCCTCTGGTGCTGCATCACCCAACCCATGCTATAGATGTGGTGAAGATGGGCATTTTTCCCGTGAGTGCCCAAGTTCCACCAAGGTAGATAAAAAAAACCCTATACATCGGCCTGTTTTATTAGGGAAAAGTTATGAGGAGAGCATGTTCAGTTTGATGCATTTACTTATATTTCCTGTCAACATGTGATTTTAAACTTGTACTTTATGGAACTTGCTCAGGGTAGCAAGAGGAATATTGAAGTAGCTTCTGGCGCTGAGTCAACTAACTCATGCTATAGATGTGGTGGAGAAGGGCATTTTGCCCGAGAGTGCACAAGTTCCACCAAGGTAGATAAAAGATCCTACATTTTGGCATGTTTTATCAGATGAAAATTAGGAGTTCTTTTTATTATGCATACTTATATATCTTGTGAGAATGTGATTCTAACATTTTATTTCATGGAGCATTCACAGGGTTGCAAGAAGAAACGTGATTTATCGAACCCTAAATCGAGGTCAAAAACAGAAATGTACCATATGGGGTCAAAATCTGCACCTCATAATCTTGCAAAGGCTCATAGCAAGAAGAAAAAGATAAACTATGAAGAAAAATACACTAACCTGCCTAGGAAGTCAGGACAAAAGGGTCGCTGGATGATGGAGGATCCGGGTTCTCGCAACTTCTTCAATGGCACATCCATGAATAATAACTGGAATTCTCCCGTTACACCATCTCGGTGGGATCATGGTTATTATACGGAATACCCTGGTCAATATGCAAGCCCTCAATTTTCTGGTCGCTATGCAAGCCCTCCTCGATCTTCCGGTTACTATGCAAGTCCTCAATCTCTCACAAGGGAGCGCACATTACATCCAGGGACTCCAATGTCATTCCAATCCAGTATAGCGCCTCAGAACGGATTCTCGGCATCTAGATTTGGGGGCTTTAGCAATGAAGGAAGAAGGAAAAGCTATGGATGGTGGTAGAAAGTCTTATTTGATTAGAGTGATTGGTAGCTGTGGGAAAGATATACTGCTCAAAGATTTGTTATTTTGTCTAGTGATTTCATCGCATAATATAAGATAATTGTAAGTTATTTCTTCATTCGTGATAGTACCAGATTACACTTATTGAGTTTAGTTGATGACATGATTCCTACTGCTCTTGGCCTGCAGGTTTCTTCATTTGCAGTTTTATAATTTTAAACATCTATCAATTTCTCTGAATCATATTCCTTGATTTTTCTTTCGTGTGAACAGTTCGACTACGTTGTCGGGTTTGTGTTGTTTAGCGATGAATTATGCTGGTTATGGTTACACCTCTCTATGCATGTTGATTCAGCATGCGAGTATTATTATCAGAAAAGTTCCAATATCTTAGGTGGAAATGAAAATGACTTCTTACTTCAGATATTACCATATTGGCAGAGGTTCTATCAGGCTAACGATAGTTTTCAAATGATTCAAATTCCAAATTTCTAGTCTACAGATTTTCACTGGGATTCAATTTCTGTATTGAGCTTGATTCTCACATTGTCATTTCTTCTTCATTGCAGATGTCTTGGACGGTGACATCGTGACATCGAACACGAGCGACATGGAGCAGGCTCAACACTCTTCTGCATTGTTGTTGTACATTGCTATGAAAATCTGAAAGGCAAATAGCTTCTGCTCTGTTATTACTTGGCGTTCCCATGGCTCTTCTTCTGTTTCTTGTAGATGATTGAACTTGAGCTACATCCTAGATGTCAATAGTTTATTTTAGTTAGTGTGAATTCCAGTAATTTAAAGTACTAGTTTGTGTAATGTACAATTTCTGAATTCTCCAAGGAAAGTTACAAATTTGATTTTTTATTTTTTTTTTATACTAGAAGAAACCAAGCATTAAGTAACTCAAAGTTCCAAATCTGATCAAGAACAAAAAACTAACAATATAGAAGTCAGGTGGATTTATTTTCAGTTGAAATGTGTATGAACTGACAGATACCACAAATGATCAATCTTTGATTTATTGAAGGGTTAGATTATAATATGGTAAATTTTTGAAAAATTATAATATGTTCGATTTTTCTTAAATATTTCAAAACCTCGTTACTTTAAAAATTTTAAAAATTTAGACGAGAATGACTAAGATACTCATTTGAATTAAGATACAAATAACTAAATTTATATTTATTATGAATAATATGGTAACTAATTTATTAGTCAACTAGGTGCAAAATGGAACAAATATGTTATATTTTATTATCATCATGTTTGATTTTAATAAAGAATCCTGTTTCTTTTAGATTTATATTTGGTTGATGCTTTGGTGGTAAGCATTTTATAGTGTGGTTGTTTGCTTCCTTTCTTTTGTGAATTGAACTTTATTGGAAGAGGTCAATTGTTTAGGCCACATGAGAATTGCCTTCTCTAACTCATCCATCTAAACAAAAAGTGTTCATTTCTTCATTAGGGTTTTTGATTGTTTGGGGCATTTCACACAAGCATTGCAATTTGCAAAGATGAAGTCTAAAGGTTAAATCCTCTGTTCTTATCAACTCTTCGTTTTCCCTCTTTCTCTCTCTCTCTCTTTTCTCTCTCCTCCATGGTCTTGGAGTCATATATGCTGTTGATTATATTCCTTCATACAAAACCTTGCTTGTGACTCTCTTAAGCATTCAAGTTAGTTGTATCACCATAGATTTGTTTTTGCTGATCTTATTGCTTCCCTTCATTGGTTTCTATCCTAATTGTGAAAACCCTAATTTCCTTTTCACTTTTTCTGTCTCAATTTTGTTCTTACTCAGTTGGGTTTTGTACTGGGACGACTTTTTGAACTTGTTCTCGATTTCTTTGATTGGTTGTTGCAGTTTGTCTATGCACCCAGTTCCACAAGAGCTTCATTTTCTACACAGCATGATTATGGCTGTAAGGGTGTTCTTTCGTAAGTAA

mRNA sequence

GGACTACGGCTTCTTTAACTTGACGGAACGACATGTCGTCGAATTGTTCGAGAGAGAGAGAGAGATAGTAGTAGTATAAACCGATTGTGTGGAAACCCTAGCGCCACCTCAAAGTTGAAGAAAAAGTTGCCAAGTTTGCTTAGTTCTTCTCCTCACCATTCAATTAGGGCTTCTTACCAGATTGCAGTTTGATTCAGTTTCGAATTTGGAGGATGGGGAGGAGAGGCAAGCAGAAGAAGTTCAAGTTCGAGGAAGACGAAGACGAAGACGAACTGAAAGAGAGGGCTTCGAAGACTACCGTTGTGGTGAGCAGTGACGACGAAGAGGCCAATGAAGATTTCAGCCTCAAGATTGTTGAGAAGGCTTTGAGATTGCGCTCCGGAAAGTTGGTCCGCTTTCCCGACCATAATCAGGTTGGTAACCGTGAACGGAGTGGTAATGGAGATGTTGACGGTGTTGGAGTTGTCGAAGTGTCTTCGTCGCCTTTGGGGGATGCTGACACTGGTGCCGGAACTAGCGGAACCAGCGTCGATGTCATCGCTGCTGCTTCTGAGGCGCGGGAATTGGGGAGTAAGAAGTCAGCGAAGAAGAGGAAGAGGAAAGTTAAGAAGCTGGAAACTGAAAAGCCCCCCGTGGTTGTCACAGAAGGAGAGAAAATCGATACAATTCCATTGATAGATCAAGTTGATTCGGAGGAACCAAAAATTACTGAAATCGAGACAACTCCATTGATAGATCAAGTTGATTCGGAGGAACCAAACATTACTGACACAACTAATAATAACGTGTTTAGGAAACTTCTTGTGAGTCCCTTTAACTTCTCTGAATTACCGTTAAGGAAAACTGATCGTGGACCAAGATACTTTGACCCTCCAGATAGTTGGGGAGCGTGCTATAATTGTGGTGAGGAAGGTCATAATGCTGTCAGTTGCACATCAGCTAAACGGAAGAAACCATGCTTTGTCTGTGGAAGTCTGGAGCACAATGCAAGGAGTTGCTTAAAGAAATTATACTCTTTATCTAATATCTTTGTTGCTGAGGCACGAGACTGCTATATTTGCAACAAAGTTGGGCATCGTGCAAAAGACTGTCCAGAGAAGCATTTGAAGAACATACAATGCTACATTTGTAAGAAATTAGGCCACTTATGTTGTGTGAATTCCACCAGCGACACTTCAGTAGACATTTCCTGCTATAAATGTGGACAGGCTGGACATACTGGTCTGGCATGCTCGAGATTACGTGGGGAAGCCTCTGCTGCTGTATCAGCCAGCTCATGCTATAGATGTGGTGAAGAAGGGCATTTTGCCCGTGAGTGTACAAGTTCCGCCAAGGGTGGCAAGAAGAATCGTGAGGAAGCCTCTGGTGCTGCATCACCTAGCCCATGCTATAGATGTGGTGAAGAAGGGCATTTTGCCCGTGAATGCATTAGTTCCGCCAAGGGTAGCAAGAGGAATATTGAAGTAGCTTCTGGCGCTGAGTCAACTAACTCATGCTATAGATGTGGTGGAGAAGGGCATTTTGCCCGAGAGTGCACAAGTTCCACCAAGGGTTGCAAGAAGAAACGTGATTTATCGAACCCTAAATCGAGGTCAAAAACAGAAATGTACCATATGGGGTCAAAATCTGCACCTCATAATCTTGCAAAGGCTCATAGCAAGAAGAAAAAGATAAACTATGAAGAAAAATACACTAACCTGCCTAGGAAGTCAGGACAAAAGGGTCGCTGGATGATGGAGGATCCGGGTTCTCGCAACTTCTTCAATGGCACATCCATGAATAATAACTGGAATTCTCCCGTTACACCATCTCGGTGGGATCATGGTTATTATACGGAATACCCTGGTCAATATGCAAGCCCTCAATTTTCTGGTCGCTATGCAAGCCCTCCTCGATCTTCCGGTTACTATGCAAGTCCTCAATCTCTCACAAGGGAGCGCACATTACATCCAGGGACTCCAATGTCATTCCAATCCAGTATAGCGCCTCAGAACGGATTCTCGGCATCTAGATTTGGGGGCTTTAGCAATGAAGGAAGAAGGAAAAGCTATGGATGTTCGACTACGTTGTCGGATGTCTTGGACGGTGACATCGTGACATCGAACACGAGCGACATGGAGCAGGCTCAACACTCTTCTGCATTGTTGTTTTTGTCTATGCACCCAGTTCCACAAGAGCTTCATTTTCTACACAGCATGATTATGGCTGTAAGGGTGTTCTTTCGTAAGTAA

Coding sequence (CDS)

ATGGGGAGGAGAGGCAAGCAGAAGAAGTTCAAGTTCGAGGAAGACGAAGACGAAGACGAACTGAAAGAGAGGGCTTCGAAGACTACCGTTGTGGTGAGCAGTGACGACGAAGAGGCCAATGAAGATTTCAGCCTCAAGATTGTTGAGAAGGCTTTGAGATTGCGCTCCGGAAAGTTGGTCCGCTTTCCCGACCATAATCAGGTTGGTAACCGTGAACGGAGTGGTAATGGAGATGTTGACGGTGTTGGAGTTGTCGAAGTGTCTTCGTCGCCTTTGGGGGATGCTGACACTGGTGCCGGAACTAGCGGAACCAGCGTCGATGTCATCGCTGCTGCTTCTGAGGCGCGGGAATTGGGGAGTAAGAAGTCAGCGAAGAAGAGGAAGAGGAAAGTTAAGAAGCTGGAAACTGAAAAGCCCCCCGTGGTTGTCACAGAAGGAGAGAAAATCGATACAATTCCATTGATAGATCAAGTTGATTCGGAGGAACCAAAAATTACTGAAATCGAGACAACTCCATTGATAGATCAAGTTGATTCGGAGGAACCAAACATTACTGACACAACTAATAATAACGTGTTTAGGAAACTTCTTGTGAGTCCCTTTAACTTCTCTGAATTACCGTTAAGGAAAACTGATCGTGGACCAAGATACTTTGACCCTCCAGATAGTTGGGGAGCGTGCTATAATTGTGGTGAGGAAGGTCATAATGCTGTCAGTTGCACATCAGCTAAACGGAAGAAACCATGCTTTGTCTGTGGAAGTCTGGAGCACAATGCAAGGAGTTGCTTAAAGAAATTATACTCTTTATCTAATATCTTTGTTGCTGAGGCACGAGACTGCTATATTTGCAACAAAGTTGGGCATCGTGCAAAAGACTGTCCAGAGAAGCATTTGAAGAACATACAATGCTACATTTGTAAGAAATTAGGCCACTTATGTTGTGTGAATTCCACCAGCGACACTTCAGTAGACATTTCCTGCTATAAATGTGGACAGGCTGGACATACTGGTCTGGCATGCTCGAGATTACGTGGGGAAGCCTCTGCTGCTGTATCAGCCAGCTCATGCTATAGATGTGGTGAAGAAGGGCATTTTGCCCGTGAGTGTACAAGTTCCGCCAAGGGTGGCAAGAAGAATCGTGAGGAAGCCTCTGGTGCTGCATCACCTAGCCCATGCTATAGATGTGGTGAAGAAGGGCATTTTGCCCGTGAATGCATTAGTTCCGCCAAGGGTAGCAAGAGGAATATTGAAGTAGCTTCTGGCGCTGAGTCAACTAACTCATGCTATAGATGTGGTGGAGAAGGGCATTTTGCCCGAGAGTGCACAAGTTCCACCAAGGGTTGCAAGAAGAAACGTGATTTATCGAACCCTAAATCGAGGTCAAAAACAGAAATGTACCATATGGGGTCAAAATCTGCACCTCATAATCTTGCAAAGGCTCATAGCAAGAAGAAAAAGATAAACTATGAAGAAAAATACACTAACCTGCCTAGGAAGTCAGGACAAAAGGGTCGCTGGATGATGGAGGATCCGGGTTCTCGCAACTTCTTCAATGGCACATCCATGAATAATAACTGGAATTCTCCCGTTACACCATCTCGGTGGGATCATGGTTATTATACGGAATACCCTGGTCAATATGCAAGCCCTCAATTTTCTGGTCGCTATGCAAGCCCTCCTCGATCTTCCGGTTACTATGCAAGTCCTCAATCTCTCACAAGGGAGCGCACATTACATCCAGGGACTCCAATGTCATTCCAATCCAGTATAGCGCCTCAGAACGGATTCTCGGCATCTAGATTTGGGGGCTTTAGCAATGAAGGAAGAAGGAAAAGCTATGGATGTTCGACTACGTTGTCGGATGTCTTGGACGGTGACATCGTGACATCGAACACGAGCGACATGGAGCAGGCTCAACACTCTTCTGCATTGTTGTTTTTGTCTATGCACCCAGTTCCACAAGAGCTTCATTTTCTACACAGCATGATTATGGCTGTAAGGGTGTTCTTTCGTAAGTAA

Protein sequence

MGRRGKQKKFKFEEDEDEDELKERASKTTVVVSSDDEEANEDFSLKIVEKALRLRSGKLVRFPDHNQVGNRERSGNGDVDGVGVVEVSSSPLGDADTGAGTSGTSVDVIAAASEARELGSKKSAKKRKRKVKKLETEKPPVVVTEGEKIDTIPLIDQVDSEEPKITEIETTPLIDQVDSEEPNITDTTNNNVFRKLLVSPFNFSELPLRKTDRGPRYFDPPDSWGACYNCGEEGHNAVSCTSAKRKKPCFVCGSLEHNARSCLKKLYSLSNIFVAEARDCYICNKVGHRAKDCPEKHLKNIQCYICKKLGHLCCVNSTSDTSVDISCYKCGQAGHTGLACSRLRGEASAAVSASSCYRCGEEGHFARECTSSAKGGKKNREEASGAASPSPCYRCGEEGHFARECISSAKGSKRNIEVASGAESTNSCYRCGGEGHFARECTSSTKGCKKKRDLSNPKSRSKTEMYHMGSKSAPHNLAKAHSKKKKINYEEKYTNLPRKSGQKGRWMMEDPGSRNFFNGTSMNNNWNSPVTPSRWDHGYYTEYPGQYASPQFSGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRRKSYGCSTTLSDVLDGDIVTSNTSDMEQAQHSSALLFLSMHPVPQELHFLHSMIMAVRVFFRK

Homology

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BLAST of CmaCh11G003240 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.6e-22
Identity = 74/231 (32.03%), Postives = 97/231 (41.99%), Query Frame = 0


Query: 227 CYNCGEEGHNAVSC----------TSAKRKKPCFVCGSLEHNARSCLKKLYSLSNIFVAE 286
           CYNCGE GH +  C            ++  + C+ CG   H AR C              
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161

Query: 287 ARD-CYICNKVGHRAKDCPEKHLKNIQCYICKKLGHLCCVNSTSDTSVDISCYKCGQAGH 346
             D CY C  VGH A+DC +K + N       K G             +  CY CG  GH
Sbjct: 162 GNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGG-------------NDGCYTCGDVGH 221

Query: 347 TGLACSR---LRGEASAAVSASSCYRCGEEGHFARECTSSAKGGKKNREEASGAASPSPC 406
               C++        S    + +CY CG  GH AR+C +        R+ + G      C
Sbjct: 222 FARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCAT-------KRQPSRG------C 281

Query: 407 YRCGEEGHFARECISSAKGSKRNIEVASGAESTNSCYRCGGEGHFARECTS 444
           Y+CG  GH AR+C     G         G  + N+CY+CG EGHFAREC+S
Sbjct: 282 YQCGGSGHLARDCDQRGSG---------GGGNDNACYKCGKEGHFARECSS 297

[Close]

BLAST of CmaCh11G003240 vs. ExPASy Swiss-Prot
Match: P36627 (Cellular nucleic acid-binding protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=byr3 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.0e-20
Identity = 51/155 (32.90%), Postives = 70/155 (45.16%), Query Frame = 0


Query: 227 CYNCGEEGHNAVSCTSAKRKKPCFVCGSLEHNARSCLKKLYSLSNIFVAEARDCYICNKV 286
           CYNC + GH A  CT  +++K C+ CG+  H  R C       S+    +  +CY C +V
Sbjct: 38  CYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDC------PSSPNPRQGAECYKCGRV 97

Query: 287 GHRAKDCPEK----------HLKNIQCYICKKLGHLCCVNSTSDTSVDISCYKCGQAGHT 346
           GH A+DC             H  N+ CY C   GH        D ++ + CY CG+ GH 
Sbjct: 98  GHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGH-----QARDCTMGVKCYSCGKIGHR 157

Query: 347 GLACSRLRGEASAAVSASSCYRCGEEGHFARECTS 372
              C +       A     CY+C + GH A  CTS
Sbjct: 158 SFECQQ-------ASDGQLCYKCNQPGHIAVNCTS 174

[Close]

BLAST of CmaCh11G003240 vs. ExPASy Swiss-Prot
Match: Q04832 (DNA-binding protein HEXBP OS=Leishmania major OX=5664 GN=HEXBP PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.8e-20
Identity = 63/182 (34.62%), Postives = 93/182 (51.10%), Query Frame = 0


Query: 280 CYICNKVGHRAKDCPEKHLK----NIQCYICKKLGHL---CCVNSTSDTSVDISCYKCGQ 339
           C  C K GH A++CPE   K    +  C+ C + GH+   C   + S  +  ++C++CG+
Sbjct: 18  CRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGE 77

Query: 340 AGHTGLACSRLRGEASAAVSASSCYRCGEEGHFARECTSS---AKGG---KKNREEASGA 399
           AGH    C         A     CY+CG+EGH +R+C SS   ++GG   K+ R  A G 
Sbjct: 78  AGHMSRDCP--NSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGG 137

Query: 400 AS-PSPCYRCGEEGHFARECISSAKGSKRNIEVASGAESTNSCYRCGGEGHFARECTSST 448
            S    CY+CG+ GH +R+C +   G        SGA    +CY+CG  GH +R+C +  
Sbjct: 138 YSGDRTCYKCGDAGHISRDCPNGQGG-------YSGA-GDRTCYKCGDAGHISRDCPNGQ 189

[Close]

BLAST of CmaCh11G003240 vs. ExPASy Swiss-Prot
Match: Q3T0Q6 (Cellular nucleic acid-binding protein OS=Bos taurus OX=9913 GN=CNBP PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.5e-17
Identity = 69/217 (31.80%), Postives = 83/217 (38.25%), Query Frame = 0


Query: 227 CYNCGEEGHNAVSC-TSAKRKKPCFVCGSLEHNARSCLKKLYSLSNIFVAEARDCYICNK 286
           C+ CG  GH A  C T   R +       +    R       SL +I       CY C +
Sbjct: 6   CFKCGRSGHWARECPTGGGRGR------GMRSRGRGFQFVSSSLPDI-------CYRCGE 65

Query: 287 VGHRAKDCPEKHLKNIQCYICKKLGHLCCVNSTSDTSVDISCYKCGQAGHTGLACSRLRG 346
            GH AKDC    L+   CY C + GH+           +  CY CG+ GH    C     
Sbjct: 66  SGHLAKDC---DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDH--- 125

Query: 347 EASAAVSASSCYRCGEEGHFARECTSSAKGGKKNREEASGAASPSPCYRCGEEGHFAREC 406
                     CY CGE GH  ++CT                     CYRCGE GH A  C
Sbjct: 126 -----ADEQKCYSCGEFGHIQKDCTK------------------VKCYRCGETGHVAINC 165

Query: 407 ISSAKGSKRNIEVASGAESTNSCYRCGGEGHFARECT 443
              +K S+ N            CYRCG  GH ARECT
Sbjct: 186 ---SKTSEVN------------CYRCGESGHLARECT 165

[Close]

BLAST of CmaCh11G003240 vs. ExPASy Swiss-Prot
Match: P62633 (Cellular nucleic acid-binding protein OS=Homo sapiens OX=9606 GN=CNBP PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.0e-17
Identity = 66/217 (30.41%), Postives = 81/217 (37.33%), Query Frame = 0


Query: 227 CYNCGEEGHNAVSC-TSAKRKKPCFVCGSLEHNARSCLKKLYSLSNIFVAEARDCYICNK 286
           C+ CG  GH A  C T   R +       +    R           +  +    CY C +
Sbjct: 6   CFKCGRSGHWARECPTGGGRGR------GMRSRGRGGFTSDRGFQFVSSSLPDICYRCGE 65

Query: 287 VGHRAKDCPEKHLKNIQCYICKKLGHLCCVNSTSDTSVDISCYKCGQAGHTGLACSRLRG 346
            GH AKDC    L+   CY C + GH+           +  CY CG+ GH    C     
Sbjct: 66  SGHLAKDC---DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDH--- 125

Query: 347 EASAAVSASSCYRCGEEGHFARECTSSAKGGKKNREEASGAASPSPCYRCGEEGHFAREC 406
                     CY CGE GH  ++CT                     CYRCGE GH A  C
Sbjct: 126 -----ADEQKCYSCGEFGHIQKDCTK------------------VKCYRCGETGHVAINC 172

Query: 407 ISSAKGSKRNIEVASGAESTNSCYRCGGEGHFARECT 443
              +K S+ N            CYRCG  GH ARECT
Sbjct: 186 ---SKTSEVN------------CYRCGESGHLARECT 172

[Close]

BLAST of CmaCh11G003240 vs. TAIR 10
Match: AT3G43590.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 265.8 bits (678), Expect = 9.6e-71
Identity = 224/658 (34.04%), Postives = 300/658 (45.59%), Query Frame = 0


Query: 1   MGRRGKQKKFKFEEDEDEDELKERASKTTVV---VSSDDEEANEDFSLKIVEKALRLRSG 60
           M R+ K +KF F++ EDED  +E     T V      DD+EANED SLKI+EKAL  R  
Sbjct: 1   MPRQNKDEKFVFDDGEDED--REDPVAITEVDNGEEEDDDEANEDLSLKILEKALSRR-- 60

Query: 61  KLVRFPDHNQVGNRERSGNGDVDGVGVVEVSSSPLGDADTGAGTSGTSVDVIAAASEARE 120
                     VGN+  S                   D  + +G   T V V    S+   
Sbjct: 61  ---------DVGNKLDS-------------------DLSSDSGVVST-VMVNGVKSKV-- 120

Query: 121 LGSKKSAKKRKRKVKKLETEKPPVVVTEGEKIDTIPLIDQVDSEEPKITEIETTPLIDQV 180
              KKS   +K K  KLE +    +V   +  D   +++++   E +  E+E        
Sbjct: 121 ---KKSESSKKMKRNKLEADHEIPIVWNDQ--DEEKVVEEIVKGEGEDDEVER------- 180

Query: 181 DSEEPNITDTTNNNVFRKLLVSPFNFSELPLRKTDRGPRYFDPPDS-WGACYNCGEEGHN 240
            S+EP   +T +N V +KLL               RG RYFDPPD+ W +CY+CGE+GH 
Sbjct: 181 -SDEPKTEETASNLVLKKLL---------------RGARYFDPPDAGWVSCYSCGEQGHT 240

Query: 241 AVSC-TSAKRKKPCFVCGSLEHNARSCLKKLYSLSNIFVAEARDCYICNKVGHRAKDCPE 300
           + +C T  KR+KPCF+CGSLEH A+ C K              DCYIC K GHRAKDCP+
Sbjct: 241 SFNCPTPTKRRKPCFICGSLEHGAKQCSK------------GHDCYICKKTGHRAKDCPD 300

Query: 301 KH------------------------------LKNIQCYICKKLGHLCCVNSTSDTSVDI 360
           K+                              LK++QCYICK  GHLCCV   +  S  +
Sbjct: 301 KYKNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSFGHLCCVEPGNSLSWAV 360

Query: 361 SCYKCGQAGHTGLACSRLRGEASAAVSASSCYRCGEEGHFARECTSSAKGGKKNREEASG 420
           SCY+CGQ GH+GLAC R   E++   SA+                          E    
Sbjct: 361 SCYRCGQLGHSGLACGRHYEESNENDSATP-------------------------ERLFN 420

Query: 421 AASPSPCYRCGEEGHFARECISSAKGSKRNIEVASGAESTNSCYRCGGEGHFARECTSST 480
           +   S CYRCGEEGHFAREC +S+     +I  + G ES   CYRC G GHFAREC +S+
Sbjct: 421 SREASECYRCGEEGHFARECPNSS-----SISTSHGRESQTLCYRCNGSGHFARECPNSS 480

Query: 481 KGCKKKRDLSNPKSRS-KTEMYHMGSKSAPH--NLAKAHSKKKKINYEEKYTNLPRKSGQ 540
           +  K+ R+ S    +S K    +    S PH  N      KKKK + EE+    PRK   
Sbjct: 481 QVSKRDRETSTTSHKSRKKNKENSEHDSTPHESNGKTKKKKKKKTHKEEQPQTSPRKRKH 540

Query: 541 KGRWMMEDPGSRNFFNGTSMNNNWNSPVTPSRWDHGYYTEYPGQYASPQF---------- 600
           +G W+ E+P   +F  G        SP+TPS ++    T     Y SP+F          
Sbjct: 541 RGGWITEEPEEESFQRGKMRRP--KSPITPSGYNRSPSTHIGHNYRSPKFNSGGHYPGSQ 550

Query: 601 SGRYASPPRSSGYYASPQSLTRERTLHPGTPMSFQSSIAPQNGFSASRFGGFSNEGRR 611
           S R+ S P  S +  S Q     + LH            P++G  A+R+  F+    R
Sbjct: 601 SSRHHSGPSPSRWQPSHQHHHHHQHLHHHHQNHSYEPAPPRHG-RANRYSEFAGNYER 550

[Close]

BLAST of CmaCh11G003240 vs. TAIR 10
Match: AT5G36240.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 112.8 bits (281), Expect = 1.0e-24
Identity = 72/196 (36.73%), Postives = 96/196 (48.98%), Query Frame = 0


Query: 276 EARDCYICNKVGHRAKDCPEKH----LKNIQCYICKKLGHLCCVNSTSDTSVDISCYKCG 335
           EA  C  C   GH    C  ++    LKNI+CY+C  LGHLCC+      S  +SCY+CG
Sbjct: 24  EAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLCCIEPGHTQSWTVSCYRCG 83

Query: 336 QAGHTGLACSRLRGEASAAVSASSCYRCGEEGHFARECTSSAK---GGKKNREEASGAAS 395
           Q GHTGLAC R   ++     + SC+ CG EGHF  +C +S         + +E  G  S
Sbjct: 84  QLGHTGLACGRHYDDS----VSPSCFICGREGHFEHQCHNSFSVCFPEDSSEDECQGPDS 143

Query: 396 PSPCY----RCGEEGHFARECISSAKGSKRNIEVASGAESTNS--------------CYR 447
            S  +    R  EEGHF  +C  S+    + I    G  S NS              CY 
Sbjct: 144 SSVRFQENTREEEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKSTSKGRETRRLCYE 203

[Close]

BLAST of CmaCh11G003240 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-23
Identity = 74/231 (32.03%), Postives = 97/231 (41.99%), Query Frame = 0


Query: 227 CYNCGEEGHNAVSC----------TSAKRKKPCFVCGSLEHNARSCLKKLYSLSNIFVAE 286
           CYNCGE GH +  C            ++  + C+ CG   H AR C              
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161

Query: 287 ARD-CYICNKVGHRAKDCPEKHLKNIQCYICKKLGHLCCVNSTSDTSVDISCYKCGQAGH 346
             D CY C  VGH A+DC +K + N       K G             +  CY CG  GH
Sbjct: 162 GNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGG-------------NDGCYTCGDVGH 221

Query: 347 TGLACSR---LRGEASAAVSASSCYRCGEEGHFARECTSSAKGGKKNREEASGAASPSPC 406
               C++        S    + +CY CG  GH AR+C +        R+ + G      C
Sbjct: 222 FARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCAT-------KRQPSRG------C 281

Query: 407 YRCGEEGHFARECISSAKGSKRNIEVASGAESTNSCYRCGGEGHFARECTS 444
           Y+CG  GH AR+C     G         G  + N+CY+CG EGHFAREC+S
Sbjct: 282 YQCGGSGHLARDCDQRGSG---------GGGNDNACYKCGKEGHFARECSS 297

[Close]

BLAST of CmaCh11G003240 vs. TAIR 10
Match: AT3G42860.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 90.5 bits (223), Expect = 5.5e-18
Identity = 41/119 (34.45%), Postives = 68/119 (57.14%), Query Frame = 0


Query: 327 CYKCGQAGHTGLACS--RLRGEASAAVSASSCYRCGEEGHFARECTSSAKGGKKNREEAS 386
           CYKCG+ GH    C+     G   +  +A  C++CG+ GH++R+CT+ +   K    +  
Sbjct: 239 CYKCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMK 298

Query: 387 GAASPSPCYRCGEEGHFARECISSAKGSKRNIEVASGAESTNSCYRCGGEGHFARECTS 444
            ++S   CY+CG++GH++R+C   +   +     A    ST  CY+CG  GH++R+CTS
Sbjct: 299 SSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTS 357

[Close]

BLAST of CmaCh11G003240 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 79.7 bits (195), Expect = 9.8e-15
Identity = 55/167 (32.93%), Postives = 70/167 (41.92%), Query Frame = 0


Query: 279 DCYICNKVGHRAKDCPEKHLKNIQCYICKKLGHLCCVNSTSDTSVDISCYKCGQAGHTGL 338
           +C+ C +VGH AKDC                G          +  +  CY CG  GH   
Sbjct: 95  NCFNCGEVGHMAKDCDG-----------GSGGKSFGGGGGRRSGGEGECYMCGDVGHFAR 154

Query: 339 ACSRLRGEASAAVSASS--CYRCGEEGHFARECTSSAKGGKKNREEASGAASPSPCYRCG 398
            C +  G  S         CY CGE GH A++C   + G +       G+     CY CG
Sbjct: 155 DCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDG-CYMCG 214

Query: 399 EEGHFARECISSAKGSKRNIEVASGAESTNSCYRCGGEGHFARECTS 444
             GHFAR+C  +  G+        G  ST  CY CGG GH A+ CTS
Sbjct: 215 GVGHFARDCRQNGGGN------VGGGGST--CYTCGGVGHIAKVCTS 241

The following BLAST results are available for this feature:

BLAST of CmaCh11G003240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65639	1.6e-22	32.03	Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1	[more]
P36627	2.0e-20	32.90	Cellular nucleic acid-binding protein homolog OS=Schizosaccharomyces pombe (stra...	[more]
Q04832	5.8e-20	34.62	DNA-binding protein HEXBP OS=Leishmania major OX=5664 GN=HEXBP PE=4 SV=1	[more]
Q3T0Q6	3.5e-17	31.80	Cellular nucleic acid-binding protein OS=Bos taurus OX=9913 GN=CNBP PE=2 SV=1	[more]
P62633	6.0e-17	30.41	Cellular nucleic acid-binding protein OS=Homo sapiens OX=9606 GN=CNBP PE=1 SV=1	[more]

BLAST of CmaCh11G003240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G43590.1	9.6e-71	34.04	zinc knuckle (CCHC-type) family protein	[more]
AT5G36240.1	1.0e-24	36.73	zinc knuckle (CCHC-type) family protein	[more]
AT4G36020.1	1.2e-23	32.03	cold shock domain protein 1	[more]
AT3G42860.1	5.5e-18	34.45	zinc knuckle (CCHC-type) family protein	[more]
AT2G17870.1	9.8e-15	32.93	cold shock domain protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 279..295 e-value: 8.3E-5 score: 32.0 coord: 248..264 e-value: 0.18 score: 15.8 coord: 355..371 e-value: 8.1E-6 score: 35.3 coord: 226..242 e-value: 0.0019 score: 27.5 coord: 302..315 e-value: 57.0 score: 0.4 coord: 427..443 e-value: 2.7E-5 score: 33.6 coord: 326..342 e-value: 0.37 score: 13.9 coord: 391..407 e-value: 7.1E-5 score: 32.2
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 226..242 e-value: 4.0E-4 score: 20.3 coord: 427..443 e-value: 1.0E-6 score: 28.5 coord: 280..295 e-value: 8.5E-6 score: 25.6 coord: 391..405 e-value: 1.9E-6 score: 27.7 coord: 355..371 e-value: 1.3E-7 score: 31.4
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 392..405 score: 11.053757
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 227..242 score: 9.850513
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 428..443 score: 10.608721
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 327..340 score: 9.059338
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 280..295 score: 10.246099
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 356..371 score: 11.086722
None	No IPR available	GENE3D	4.10.60.10		coord: 222..269 e-value: 5.8E-11 score: 44.0
None	No IPR available	GENE3D	4.10.60.10		coord: 299..343 e-value: 8.8E-6 score: 27.5
None	No IPR available	GENE3D	4.10.60.10		coord: 344..383 e-value: 3.8E-7 score: 31.6 coord: 275..298 e-value: 1.4E-5 score: 26.6 coord: 422..462 e-value: 5.1E-6 score: 28.0 coord: 386..415 e-value: 3.5E-6 score: 28.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 371..391
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 447..482
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..31
None	No IPR available	PANTHER	PTHR46978	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 296..382
None	No IPR available	PANTHER	PTHR46978	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 419..609
None	No IPR available	PANTHER	PTHR46978:SF1	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 1..298 coord: 419..609
None	No IPR available	PANTHER	PTHR46978	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 378..418
None	No IPR available	PANTHER	PTHR46978:SF1	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 296..382
None	No IPR available	PANTHER	PTHR46978	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 1..298
None	No IPR available	PANTHER	PTHR46978:SF1	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 378..418
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 383..444
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 277..313
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 319..372
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 220..265

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G003240.1	CmaCh11G003240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding