CmaCh11G003100 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G003100
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	pentatricopeptide repeat-containing protein At3g18020
Location	Cma_Chr11: 1540498 .. 1541024 (-)
RNA-Seq Expression	CmaCh11G003100
Synteny	CmaCh11G003100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCGGACGGCCGAAAATTGGTACTGGAAGAGAGCTTCGCCGACGGCCCTTGCTAGACGAAGAAGATTCATGGACGCTGTACCAAGTAGCGAAATGTCGATGAAATGTTCCGGTTTCTCGACGCCCTCCGCCTCCATGGAAATCAATTGCATTCTCTTAATCTCGGTAATGTAATCCATGGCCTCTGTCATTCCCCCCGATTTATGCTCTCCTTTGCTTCCCGGTGTGTATTGGATGAACAGATGTGTAATGTTCTTCTTGCTTGTTTGCTTGATTATCGATCGCCGTATTGTGCTTTGCGTTTGTCTGTTTGTTTGTTTTGTTTGATGCTTTGCCGGAGTTTGTTCATTCTGTAGTGTATTATAATCGCTTGATCGATCAGTTTTTGTTCGTTTTCACTACCGAATGTAGCTCATAGGGTTTTATTTGATATGAAGAGTGAAAGACAGTGTCCAAATGTTGTTACCTGTTCAACCTTGATCGATGGATACTGCTGTGTTCGTAACGTATCTGCTGCCGAGTAA

mRNA sequence

ATGGATCGGACGGCCGAAAATTGGTACTGGAAGAGAGCTTCGCCGACGGCCCTTGCTAGACGAAGAAGATTCATGGACGCTGTACCAAGTAGCGAAATGTCGATGAAATGTTCCGGTTTCTCGACGCCCTCCGCCTCCATGGAAATCAATTGCATTCTCTTAATCTCGGTAATTTTTTGTTCGTTTTCACTACCGAATGTAGCTCATAGGGTTTTATTTGATATGAAGAGTGAAAGACAGTGTCCAAATGTTGTTACCTGTTCAACCTTGATCGATGGATACTGCTGTGTTCGTAACGTATCTGCTGCCGAGTAA

Coding sequence (CDS)

ATGGATCGGACGGCCGAAAATTGGTACTGGAAGAGAGCTTCGCCGACGGCCCTTGCTAGACGAAGAAGATTCATGGACGCTGTACCAAGTAGCGAAATGTCGATGAAATGTTCCGGTTTCTCGACGCCCTCCGCCTCCATGGAAATCAATTGCATTCTCTTAATCTCGGTAATTTTTTGTTCGTTTTCACTACCGAATGTAGCTCATAGGGTTTTATTTGATATGAAGAGTGAAAGACAGTGTCCAAATGTTGTTACCTGTTCAACCTTGATCGATGGATACTGCTGTGTTCGTAACGTATCTGCTGCCGAGTAA

Protein sequence

MDRTAENWYWKRASPTALARRRRFMDAVPSSEMSMKCSGFSTPSASMEINCILLISVIFCSFSLPNVAHRVLFDMKSERQCPNVVTCSTLIDGYCCVRNVSAAE

Homology

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BLAST of CmaCh11G003100 vs. TAIR 10
Match: AT3G18020.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 3.5e-04
Identity = 17/36 (47.22%), Postives = 26/36 (72.22%), Query Frame = 0


Query: 68  AHRVLFDMKSERQCPNVVTCSTLIDGYCCVRNVSAA 104
           AH+++FDM++    P+VVT +TLI GYC +R +  A
Sbjct: 181 AHKLVFDMRNRGHLPDVVTFTTLIGGYCEIRELEVA 216

The following BLAST results are available for this feature:

BLAST of CmaCh11G003100 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh11G003100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18020.1	3.5e-04	47.22	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 16..104 e-value: 2.1E-7 score: 32.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G003100.1	CmaCh11G003100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding