CmaCh11G002830 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G002830
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionProtein of unknown function (DUF1639)
LocationCma_Chr11: 1407135 .. 1408048 (-)
RNA-Seq ExpressionCmaCh11G002830
SyntenyCmaCh11G002830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGTTGTTCTTCCTTATTCCCCCGAAAAAACCAAAACCTTCCGACTCTGCCAACGTTTTACTCCAAGCCACGCCAAAGCCTTCACCCCTCACCTTTAAACCACCGACCCACCTCCTCTCGTAATCTGAAGCTCATGGCTATGGAGCCTGAAAGATCAAAGCCACTGCACAACTTCTCCATGCCCTATCTCACATGGGGTTCACAAAGATTCCTCAAGTGTATCAACCTTCCTTCCAACTCCAATAAATCCAACCCCCCGAACTTCACCAACCTTTCTTCTCCGATGAATCATGTAACACACAAACCAAGTAACGGGAACAACCATCGAACCAGTTCCATCCAGGAATCGAAGAAACCCAAATTTTCAATCGTTGATGAAGCGGGCGGAGACGAATCCGCTGCGGCCAGGCCGTGGAATTTGAGGACTCGCAGAGCAGCTTGTAAGGGTCCTCAAGATGAGAGGAATTTGGAATTGGGTTCATCTAAGAATGAGAAGGAGAAGAATCGGAGTGCGTTAATTGTATCCCTATCGAAAGAGGAGATCGAAGAGGACTTTGGGGTGCTGGTCGCTAGGCTACCGAGGAGGCCAAAGAAGAGGCCTAGAGCTGTACAGAAGCAATTGGATGTAAGAACATGGAATCCCAGTTGTTTCATGAGGTTTGAATGCTTAATGATTTTACTCATCATTTTGATTTTTTGCAGACGCTTTTTCCTGGGCTGTTTCTTACTCAAATTACTCCGGATTCCTATAAACTTGCTGATTAAAAGCTTCGAATTGTTTTCTGTTACAATAATGGAAGTGTAAATAATTACCAAAATCAAATCTGAAGTTACTTTAAATTTTGTTTGCCAAGTTTCTTGGGTGTTCTGTTCGCTGTATAATTCTTCAACTATCTGAAATGCAATGCAAGGC

mRNA sequence

AATGTTGTTCTTCCTTATTCCCCCGAAAAAACCAAAACCTTCCGACTCTGCCAACGTTTTACTCCAAGCCACGCCAAAGCCTTCACCCCTCACCTTTAAACCACCGACCCACCTCCTCTCGTAATCTGAAGCTCATGGCTATGGAGCCTGAAAGATCAAAGCCACTGCACAACTTCTCCATGCCCTATCTCACATGGGGTTCACAAAGATTCCTCAAGTGTATCAACCTTCCTTCCAACTCCAATAAATCCAACCCCCCGAACTTCACCAACCTTTCTTCTCCGATGAATCATGTAACACACAAACCAAGTAACGGGAACAACCATCGAACCAGTTCCATCCAGGAATCGAAGAAACCCAAATTTTCAATCGTTGATGAAGCGGGCGGAGACGAATCCGCTGCGGCCAGGCCGTGGAATTTGAGGACTCGCAGAGCAGCTTGTAAGGGTCCTCAAGATGAGAGGAATTTGGAATTGGGTTCATCTAAGAATGAGAAGGAGAAGAATCGGAGTGCGTTAATTGTATCCCTATCGAAAGAGGAGATCGAAGAGGACTTTGGGGTGCTGGTCGCTAGGCTACCGAGGAGGCCAAAGAAGAGGCCTAGAGCTGTACAGAAGCAATTGGATACGCTTTTTCCTGGGCTGTTTCTTACTCAAATTACTCCGGATTCCTATAAACTTGCTGATTAAAAGCTTCGAATTGTTTTCTGTTACAATAATGGAAGTGTAAATAATTACCAAAATCAAATCTGAAGTTACTTTAAATTTTGTTTGCCAAGTTTCTTGGGTGTTCTGTTCGCTGTATAATTCTTCAACTATCTGAAATGCAATGCAAGGC

Coding sequence (CDS)

ATGGCTATGGAGCCTGAAAGATCAAAGCCACTGCACAACTTCTCCATGCCCTATCTCACATGGGGTTCACAAAGATTCCTCAAGTGTATCAACCTTCCTTCCAACTCCAATAAATCCAACCCCCCGAACTTCACCAACCTTTCTTCTCCGATGAATCATGTAACACACAAACCAAGTAACGGGAACAACCATCGAACCAGTTCCATCCAGGAATCGAAGAAACCCAAATTTTCAATCGTTGATGAAGCGGGCGGAGACGAATCCGCTGCGGCCAGGCCGTGGAATTTGAGGACTCGCAGAGCAGCTTGTAAGGGTCCTCAAGATGAGAGGAATTTGGAATTGGGTTCATCTAAGAATGAGAAGGAGAAGAATCGGAGTGCGTTAATTGTATCCCTATCGAAAGAGGAGATCGAAGAGGACTTTGGGGTGCTGGTCGCTAGGCTACCGAGGAGGCCAAAGAAGAGGCCTAGAGCTGTACAGAAGCAATTGGATACGCTTTTTCCTGGGCTGTTTCTTACTCAAATTACTCCGGATTCCTATAAACTTGCTGATTAA

Protein sequence

MAMEPERSKPLHNFSMPYLTWGSQRFLKCINLPSNSNKSNPPNFTNLSSPMNHVTHKPSNGNNHRTSSIQESKKPKFSIVDEAGGDESAAARPWNLRTRRAACKGPQDERNLELGSSKNEKEKNRSALIVSLSKEEIEEDFGVLVARLPRRPKKRPRAVQKQLDTLFPGLFLTQITPDSYKLAD
Homology
BLAST of CmaCh11G002830 vs. TAIR 10
Match: AT3G18295.1 (Protein of unknown function (DUF1639) )

HSP 1 Score: 146.4 bits (368), Expect = 2.3e-35
Identity = 91/209 (43.54%), Postives = 125/209 (59.81%), Query Frame = 0

Query: 5   PERSKPLHNFSMPYLTWGSQRFLKCINLPSNSNKSNPPNFTNLSSPMNHVTHKPSNGNNH 64
           PERSK LHNF++PYL WG QRFL+C+ LP ++   + P+ ++  SP +H +H        
Sbjct: 7   PERSKRLHNFTLPYLRWGQQRFLRCVKLPHHNRSPSFPSSSSSPSP-DHRSHNGGLSGEL 66

Query: 65  RTSSIQESKKPKFSIVDEAG----GDESAAARPWNLRTRRAACKGPQDE----------- 124
           R   + ++ +PK S++   G    GD  AAARPWNLRTRRAAC  P  +           
Sbjct: 67  RLDLVYDANRPKLSVLGNGGDNNNGDVVAAARPWNLRTRRAACNEPPGDDSTRIIESSSS 126

Query: 125 -RNLELG-----------SSKNEKEKNRSALIVSLSKEEIEEDFGVLVA-RLPRRPKKRP 184
            R  E+G           S +N+ EK + +  VSL +EEIE+DF  L+  R PRRPKKRP
Sbjct: 127 LRRHEIGVKRGGSEDGGDSQQNKNEKVKFS--VSLLREEIEQDFSALIGKRPPRRPKKRP 186

BLAST of CmaCh11G002830 vs. TAIR 10
Match: AT1G48770.1 (Protein of unknown function (DUF1639) )

HSP 1 Score: 124.4 bits (311), Expect = 9.5e-29
Identity = 83/196 (42.35%), Postives = 113/196 (57.65%), Query Frame = 0

Query: 3   MEP--ERSKPLHNFSMPYLTWGSQRFLKCINLPSNSNKSNPPNF--TNLSSPMNHVTHKP 62
           MEP  ERSK LHNFS+P L WG QRFL+C+NLPS    S+ P+   TN S  +  V+   
Sbjct: 1   MEPPFERSKRLHNFSLPQLRWGQQRFLRCVNLPSPPPSSSSPDHAATNRSVSIAGVSLTR 60

Query: 63  SNGNNHRTSSIQESKKPKFSIVDEAGGDESAAARPWNLRTRRAACKGPQDERNLELGSSK 122
             G   +                   G+  AAA+PWNLR RRAAC  P +E  +E+G +K
Sbjct: 61  GGGGGAK------------------NGEVVAAAKPWNLRMRRAACSEPGEE--IEIGVNK 120

Query: 123 -----------NEKEKNRSALIVSLSKEEIEEDFG-VLVARLPRRPKKRPRAVQKQLDTL 181
                       +K+  +S   ++LS++EIE+DF  V   + P+RPKKRPR VQK+L+T+
Sbjct: 121 RRSIIDNEDGGGDKKNEKSKFSIALSRDEIEQDFSFVFGKKPPKRPKKRPRLVQKKLNTI 176

BLAST of CmaCh11G002830 vs. TAIR 10
Match: AT1G25370.1 (Protein of unknown function (DUF1639) )

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-19
Identity = 82/249 (32.93%), Postives = 112/249 (44.98%), Query Frame = 0

Query: 6   ERSKPLHNFSMPYLTWGSQRFLKCINLPSNSNKSN------------------------- 65
           +RSK LHNF +P L WG+QR LKC  + S SN +N                         
Sbjct: 16  QRSKTLHNFPLPNL-WGNQRQLKCTKIDSISNNNNNGGGPGGDHRLRRRSPPLEFADSPV 75

Query: 66  --PPNFTN---------------------LSSPMNHVTHKPSNGNNHRTSSIQESKKPKF 125
             P  F N                     L S +   T K +    ++  + +E ++   
Sbjct: 76  SMPFRFGNSDHRRPFKSGSEEGIEEFRVKLMSDLKTETDKITQSMFNKGVTEEEEEQIDG 135

Query: 126 SIVDEAGGDES---AAARPWNLRTRR-AACKGPQDERNLELGSSKNEK------------ 185
           S      G E       +PWNLR RR AACK P+    +  G    EK            
Sbjct: 136 SGSGSGSGQEKEMIPPVKPWNLRKRRAAACKEPESNSLINKGIVIEEKVVKNPSPVRGGG 195

BLAST of CmaCh11G002830 vs. TAIR 10
Match: AT1G68340.1 (Protein of unknown function (DUF1639) )

HSP 1 Score: 81.3 bits (199), Expect = 9.2e-16
Identity = 73/233 (31.33%), Postives = 104/233 (44.64%), Query Frame = 0

Query: 6   ERSKPLHNFSMPYLTWGSQRFLKCINLPSNSNKSNPPNFTNLSSPMNHVTHKPSNGNNHR 65
           ERSK L NFS+P L WG+QR L+C     +       + +     +   +    + + +R
Sbjct: 8   ERSKTLINFSLPKL-WGTQRLLRCGKGDDSDGDGGEGSSSGGDQRIRRRSSNFESDHQNR 67

Query: 66  TSSIQESKKP--------------------KFSIV-----------------------DE 125
              ++ S+K                     K SI                         E
Sbjct: 68  RLKVESSEKEGIEEFREKIMLDLRNVADKMKESIFRQQVLLGEEEEDKEIEIERDDSPPE 127

Query: 126 AGGDESAAARPWNLRTRRAACKGP----QDERN------LELGSSKNEKEKNRSALIVSL 185
           A G  +   RPWNLR RRAACK       D +N      +      NE  K+RS L+ +L
Sbjct: 128 ATGAATVEVRPWNLRKRRAACKASISLGIDSKNQCKESVMNPSMLGNELGKDRSRLLYTL 187

BLAST of CmaCh11G002830 vs. TAIR 10
Match: AT3G60410.1 (Protein of unknown function (DUF1639) )

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-09
Identity = 34/95 (35.79%), Postives = 55/95 (57.89%), Query Frame = 0

Query: 91  ARPWNLRTRRAACKGPQDERNLELGSSKNEKEKNRSALIVSLSKEEIEEDFGVLVARLP- 150
           A P N        +  +    ++   +  E+++ +  L +SLSK EI+ED   L    P 
Sbjct: 228 ALPENKSLGTVRTESIRSRNGVDAKMATTERKEKKPRLSISLSKLEIDEDIYALTGSKPS 287

Query: 151 RRPKKRPRAVQKQLDTLFPGLFLTQITPDSYKLAD 185
           RRPKKR + VQKQLD LFPGL++  ++ ++YK+++
Sbjct: 288 RRPKKRAKNVQKQLDVLFPGLWMGNVSSEAYKVSE 322

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT3G18295.12.3e-3543.54Protein of unknown function (DUF1639) [more]
AT1G48770.19.5e-2942.35Protein of unknown function (DUF1639) [more]
AT1G25370.11.0e-1932.93Protein of unknown function (DUF1639) [more]
AT1G68340.19.2e-1631.33Protein of unknown function (DUF1639) [more]
AT3G60410.11.3e-0935.79Protein of unknown function (DUF1639) [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012438Protein of unknown function DUF1639PFAMPF07797DUF1639coord: 132..180
e-value: 8.5E-23
score: 80.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..124
NoneNo IPR availablePANTHERPTHR33130PUTATIVE (DUF1639)-RELATEDcoord: 2..182
NoneNo IPR availablePANTHERPTHR33130:SF43OS01G0688600 PROTEINcoord: 2..182

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G002830.1CmaCh11G002830.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding