CmaCh11G002610 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G002610
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	transcription factor MYBS1-like
Location	Cma_Chr11: 1319866 .. 1321536 (+)
RNA-Seq Expression	CmaCh11G002610
Synteny	CmaCh11G002610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGGGGGATGAAGATGACAAAGAACATGTCACTTCAACTCCCCAAATAGTGGTCCTCTCTTAATTGAGAGTTTCACCACTCACCTCCTTCCCTTGCCCTACACCACATCCTTCACTCTTCTCTCTCCTCTATCCTTTGCCCTCCAAAAACCAGACTCTTCCCCCAGAAAACTGAACAATCCAGCATGCTTTAATCCATTACCATTTCCACTCCTGGGTTTACCAAACATCGCTGCACCATGTCAACTGGATCAGCTGCCTGGACCAAAGAAGAAGATAAAGCATTTGAAAATGCCATAGCTACGCATTGGGATGCTCCAGAATTGGAAGGGAAGGAGTCTGAAGAGATGTGGGAAAAGATTGCTTCAATGCTTCCAACCAAGAACATGGAAGACTTGAAACAACACTACCAAATGCTGGTTGAAGATGTCGGTGCCATTGAGGCCGGCCAAGTTCCCATTCCAAATTATGCTTCTGTTGGAGAAGAAACAACTAATGCTTCTACTAAGGACAAGGATCGTCATCTTCATCCTCATGGGGCCACTGGCTCTGATACTAATAAAAGACCCAATTCAGGTTTTGGAAGTGGGTTTTCTGGGCTCTCCCACGACTCGTCTTCCCATGCCACAAAGGGCGGATCCAGGTCCGAACAAGAAAGAAGGAAAGGGATCCCATGGACGGAGGAAGAACACAGGTTTGTGTATTTTCAACAACTTCGAATATTGGGTGATTTCCTTGAGAGCTATATAATTTATCAATTTAGATCCAAAAAGGAGAAAGGTGTATCCGGATATTTGTTCTTCTGGTCTGTGAGATCTGGACTAGCAATGGAATCATTCTCCCTCCTTTTTTCATACAGAGATTTCTTAAGCTGAACAGAATTGAGATAGATAGATTCTTAACTATTGCTATTTTCAGGTTATTTCTACTGGGTCTAGACAAGTTTGGGAAAGGGGATTGGAGAAGCATTTCAAGAAACTTTGTTATATCCAGGACACCGACACAAGTGGCAAGTCATGCACAGAAATATTTCATTCGATTGAACTCAATGAACAGAGATAGAAGAAGATCAAGCATTCATGACATTACCTCAGTTAATAACGGTGGTGGCGACGTCATGGCCCATCAAGCTCCGATCACCGGCCACCAGACGAACGGCATGAACCAGAATAATCCACCGGCTTTGGGGCCACCAGGGAAGCACCGCCCTCAGCAACATCTGCCCGGAATAGGGATGTACGGGGCACCAGTTGGGCATCCAGTAGCGACTCCTCCGGGGCACATGGCATCGGCAGTTGGCACTCCGGTGATGCTTCCTCATGGGATCCATCCCCATCCTCCTTATGTAATGCCAGTAGCTTATCCAATGGCTCCTCCACCAATGCACCAATGACAATTCTTTTTTCCATCTTTCCTTTCTGTAGTTAGATTTTTGTATTCATGGATCAAAATAAGAAAGTTGAGGCATAACAAAGAAGAACAAAGGGAAAGTTCACTACTTTTCAACTTTTACCTTCACTATGATCCATCCCCAACCATGTTGTGGAGAGAATACAACAGTATAGAGATTTGAGAAACGCCCTTTTTCAGCCTCTTAAGGATAAATATGAATATGGAATCCAATTTCATTTTCATCATGTATATGATAGTATAACTGCAATGAAATATGAG

mRNA sequence

GGGGGGGGATGAAGATGACAAAGAACATGTCACTTCAACTCCCCAAATAGTGGTCCTCTCTTAATTGAGAGTTTCACCACTCACCTCCTTCCCTTGCCCTACACCACATCCTTCACTCTTCTCTCTCCTCTATCCTTTGCCCTCCAAAAACCAGACTCTTCCCCCAGAAAACTGAACAATCCAGCATGCTTTAATCCATTACCATTTCCACTCCTGGGTTTACCAAACATCGCTGCACCATGTCAACTGGATCAGCTGCCTGGACCAAAGAAGAAGATAAAGCATTTGAAAATGCCATAGCTACGCATTGGGATGCTCCAGAATTGGAAGGGAAGGAGTCTGAAGAGATGTGGGAAAAGATTGCTTCAATGCTTCCAACCAAGAACATGGAAGACTTGAAACAACACTACCAAATGCTGGTTGAAGATGTCGGTGCCATTGAGGCCGGCCAAGTTCCCATTCCAAATTATGCTTCTGTTGGAGAAGAAACAACTAATGCTTCTACTAAGGACAAGGATCGTCATCTTCATCCTCATGGGGCCACTGGCTCTGATACTAATAAAAGACCCAATTCAGGTTTTGGAAGTGGGTTTTCTGGGCTCTCCCACGACTCGTCTTCCCATGCCACAAAGGGCGGATCCAGGTCCGAACAAGAAAGAAGGAAAGGGATCCCATGGACGGAGGAAGAACACAGGTTATTTCTACTGGGTCTAGACAAGTTTGGGAAAGGGGATTGGAGAAGCATTTCAAGAAACTTTGTTATATCCAGGACACCGACACAAGTGGCAAGTCATGCACAGAAATATTTCATTCGATTGAACTCAATGAACAGAGATAGAAGAAGATCAAGCATTCATGACATTACCTCAGTTAATAACGGTGGTGGCGACGTCATGGCCCATCAAGCTCCGATCACCGGCCACCAGACGAACGGCATGAACCAGAATAATCCACCGGCTTTGGGGCCACCAGGGAAGCACCGCCCTCAGCAACATCTGCCCGGAATAGGGATGTACGGGGCACCAGTTGGGCATCCAGTAGCGACTCCTCCGGGGCACATGGCATCGGCAGTTGGCACTCCGGTGATGCTTCCTCATGGGATCCATCCCCATCCTCCTTATGTAATGCCAGTAGCTTATCCAATGGCTCCTCCACCAATGCACCAATGACAATTCTTTTTTCCATCTTTCCTTTCTGTAGTTAGATTTTTGTATTCATGGATCAAAATAAGAAAGTTGAGGCATAACAAAGAAGAACAAAGGGAAAGTTCACTACTTTTCAACTTTTACCTTCACTATGATCCATCCCCAACCATGTTGTGGAGAGAATACAACAGTATAGAGATTTGAGAAACGCCCTTTTTCAGCCTCTTAAGGATAAATATGAATATGGAATCCAATTTCATTTTCATCATGTATATGATAGTATAACTGCAATGAAATATGAG

Coding sequence (CDS)

ATGTCAACTGGATCAGCTGCCTGGACCAAAGAAGAAGATAAAGCATTTGAAAATGCCATAGCTACGCATTGGGATGCTCCAGAATTGGAAGGGAAGGAGTCTGAAGAGATGTGGGAAAAGATTGCTTCAATGCTTCCAACCAAGAACATGGAAGACTTGAAACAACACTACCAAATGCTGGTTGAAGATGTCGGTGCCATTGAGGCCGGCCAAGTTCCCATTCCAAATTATGCTTCTGTTGGAGAAGAAACAACTAATGCTTCTACTAAGGACAAGGATCGTCATCTTCATCCTCATGGGGCCACTGGCTCTGATACTAATAAAAGACCCAATTCAGGTTTTGGAAGTGGGTTTTCTGGGCTCTCCCACGACTCGTCTTCCCATGCCACAAAGGGCGGATCCAGGTCCGAACAAGAAAGAAGGAAAGGGATCCCATGGACGGAGGAAGAACACAGGTTATTTCTACTGGGTCTAGACAAGTTTGGGAAAGGGGATTGGAGAAGCATTTCAAGAAACTTTGTTATATCCAGGACACCGACACAAGTGGCAAGTCATGCACAGAAATATTTCATTCGATTGAACTCAATGAACAGAGATAGAAGAAGATCAAGCATTCATGACATTACCTCAGTTAATAACGGTGGTGGCGACGTCATGGCCCATCAAGCTCCGATCACCGGCCACCAGACGAACGGCATGAACCAGAATAATCCACCGGCTTTGGGGCCACCAGGGAAGCACCGCCCTCAGCAACATCTGCCCGGAATAGGGATGTACGGGGCACCAGTTGGGCATCCAGTAGCGACTCCTCCGGGGCACATGGCATCGGCAGTTGGCACTCCGGTGATGCTTCCTCATGGGATCCATCCCCATCCTCCTTATGTAATGCCAGTAGCTTATCCAATGGCTCCTCCACCAATGCACCAATGA

Protein sequence

MSTGSAAWTKEEDKAFENAIATHWDAPELEGKESEEMWEKIASMLPTKNMEDLKQHYQMLVEDVGAIEAGQVPIPNYASVGEETTNASTKDKDRHLHPHGATGSDTNKRPNSGFGSGFSGLSHDSSSHATKGGSRSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGGGDVMAHQAPITGHQTNGMNQNNPPALGPPGKHRPQQHLPGIGMYGAPVGHPVATPPGHMASAVGTPVMLPHGIHPHPPYVMPVAYPMAPPPMHQ

Homology

[Close]

BLAST of CmaCh11G002610 vs. ExPASy Swiss-Prot
Match: B8A9B2 (Transcription factor MYBS1 OS=Oryza sativa subsp. indica OX=39946 GN=MYBS1 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.1e-71
Identity = 177/326 (54.29%), Postives = 208/326 (63.80%), Query Frame = 0


Query: 2   STGSAAWTKEEDKAFENAIATHWDAPELEGKESEEMW-EKIASMLP-TKNMEDLKQHYQM 61
           +  +AAWT+E+DKAFENA+A     P  +G   ++ W   +A+ +P  ++ E++++HY+ 
Sbjct: 12  AAAAAAWTREDDKAFENALAACAAPPPADGGAPDDDWFAALAASVPGARSAEEVRRHYEA 71

Query: 62  LVEDVGAIEAGQVPIPNYASVGEETT-------NASTKDKDRHLHPHGATGSDTNKRPNS 121
           LVEDV AI+AG+VP+P YA  GEE+         A+   KD      G    D  K    
Sbjct: 72  LVEDVAAIDAGRVPLPRYA--GEESAAPPDGAGAAAAASKD------GGHRRDERK---- 131

Query: 122 GFGSGFSGLSHDSSSHATKGGSRSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRN 181
           G G G+ G          K  S++EQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRN
Sbjct: 132 GGGGGYDG---------GKSCSKAEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRN 191

Query: 182 FVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGGGDVMAHQAPITGHQTNG 241
           FVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSV  G        APITGHQ  G
Sbjct: 192 FVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVTAGDQVAAQQGAPITGHQATG 251

Query: 242 MNQNNP--PALGPPGKHRPQQHLPG-----IGMY-GAPVGHPVATPPGHMA-SAVGTPVM 301
               NP   ALGPPG      H PG     + MY  AP+GHPVA   GHM  +AVGTPV+
Sbjct: 252 ----NPAAAALGPPGMKHHHHHHPGGAPPPMPMYSAAPMGHPVA---GHMVPAAVGTPVV 306

Query: 302 LPHGIHPHPPYVMPVAYPMAPPPMHQ 310
            P G   H PYV+PV YP  P  MHQ
Sbjct: 312 FPPG---HAPYVVPVGYPAPPAKMHQ 306

[Close]

BLAST of CmaCh11G002610 vs. ExPASy Swiss-Prot
Match: Q8LH59 (Transcription factor MYBS1 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBS1 PE=1 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.1e-71
Identity = 177/326 (54.29%), Postives = 208/326 (63.80%), Query Frame = 0


Query: 2   STGSAAWTKEEDKAFENAIATHWDAPELEGKESEEMW-EKIASMLP-TKNMEDLKQHYQM 61
           +  +AAWT+E+DKAFENA+A     P  +G   ++ W   +A+ +P  ++ E++++HY+ 
Sbjct: 12  AAAAAAWTREDDKAFENALAACAAPPPADGGAPDDDWFAALAASVPGARSAEEVRRHYEA 71

Query: 62  LVEDVGAIEAGQVPIPNYASVGEETT-------NASTKDKDRHLHPHGATGSDTNKRPNS 121
           LVEDV AI+AG+VP+P YA  GEE+         A+   KD      G    D  K    
Sbjct: 72  LVEDVAAIDAGRVPLPRYA--GEESAAPPDGAGAAAAASKD------GGHRRDERK---- 131

Query: 122 GFGSGFSGLSHDSSSHATKGGSRSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRN 181
           G G G+ G          K  S++EQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRN
Sbjct: 132 GGGGGYDG---------GKSCSKAEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRN 191

Query: 182 FVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGGGDVMAHQAPITGHQTNG 241
           FVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSV  G        APITGHQ  G
Sbjct: 192 FVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVTAGDQVAAQQGAPITGHQATG 251

Query: 242 MNQNNP--PALGPPGKHRPQQHLPG-----IGMY-GAPVGHPVATPPGHMA-SAVGTPVM 301
               NP   ALGPPG      H PG     + MY  AP+GHPVA   GHM  +AVGTPV+
Sbjct: 252 ----NPAAAALGPPGMKHHHHHHPGGAPPPMPMYSAAPMGHPVA---GHMVPAAVGTPVV 306

Query: 302 LPHGIHPHPPYVMPVAYPMAPPPMHQ 310
            P G   H PYV+PV YP  P  MHQ
Sbjct: 312 FPPG---HAPYVVPVGYPAPPAKMHQ 306

[Close]

BLAST of CmaCh11G002610 vs. ExPASy Swiss-Prot
Match: Q9FNN6 (Transcription factor SRM1 OS=Arabidopsis thaliana OX=3702 GN=SRM1 PE=1 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 6.9e-61
Identity = 159/317 (50.16%), Postives = 192/317 (60.57%), Query Frame = 0


Query: 1   MSTGSAAWTKEEDKAFENAIATHWDAPELEGKESEEMWEKIASMLPTKNMEDLKQHYQML 60
           +S GS  W++E+D AFE A+A + D       ESEE WEKIA+ +P K++E +K+HY++L
Sbjct: 6   VSDGS-VWSREDDIAFERALANNTD-------ESEERWEKIAADVPGKSVEQIKEHYELL 65

Query: 61  VEDVGAIEAGQVPIPNYASVGEETTNASTKDKDRHLHPHGATGSDTNKRPNSGFGSGFSG 120
           VEDV  IE+G VP+P Y S                  P G+ G       + G  S   G
Sbjct: 66  VEDVTRIESGCVPLPAYGS------------------PEGSNG----HAGDEGASSKKGG 125

Query: 121 LSHDSSSHATKGGSRSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPT 180
            SH   S+   G S+S+QERRKGI WTE+EHRLFLLGLDK+GKGDWRSISRNFV++RTPT
Sbjct: 126 NSHAGESNQA-GKSKSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPT 185

Query: 181 QVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGGGDVMAHQAPITG-----HQTNGMNQ 240
           QVASHAQKYFIRLNSMN+DRRRSSIHDITSV  G  DV   Q PITG     +  N  N 
Sbjct: 186 QVASHAQKYFIRLNSMNKDRRRSSIHDITSV--GNADVSTPQGPITGQNNSNNNNNNNNN 245

Query: 241 NNPPALGPPG----KHRPQQHLPGIGMYGAP-VGHPVATPPGHMASAVGTPVMLP----- 300
           N+ PA+   G    K    Q  PG  MYG P +G P          AVGTPV LP     
Sbjct: 246 NSSPAVAGGGNKSAKQAVSQAPPGPPMYGTPAIGQP----------AVGTPVNLPAPPHM 279

[Close]

BLAST of CmaCh11G002610 vs. ExPASy Swiss-Prot
Match: Q8S9H7 (Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 5.5e-42
Identity = 106/263 (40.30%), Postives = 144/263 (54.75%), Query Frame = 0


Query: 2   STGSAAWTKEEDKAFENAIATHWDAPELEGKESEEMWEKIASMLPTKNMEDLKQHYQMLV 61
           S  +  WT  E+KAFENA+A          + +   WE++A  +P K + D+ + Y+ L 
Sbjct: 20  SRSTTRWTAAENKAFENALAVF-------DENTPNRWERVAERVPGKTVGDVMRQYKELE 79

Query: 62  EDVGAIEAGQVPIPNYASVGEETTNASTKDKDRHLHPHGATGSDTNKRPNSGFGSGFSGL 121
           +DV +IEAG VP+P Y++    T                            G G GF G 
Sbjct: 80  DDVSSIEAGFVPVPGYSTSSPFTL-------------------------EWGSGHGFDGF 139

Query: 122 --SHDSSSHATKGGSRSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTP 181
             S+ +    +  G  SEQER+KG+PWTEEEH+LFL+GL K+GKGDWR+ISRNFVI+RTP
Sbjct: 140 KQSYGTGGRKSSSGRPSEQERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTP 199

Query: 182 TQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGGGDVMAHQAPITGHQTNGMNQNNPP 241
           TQVASHAQKYFIR  S  +D+RR+SIHDIT+VN            ++ +QT   +   PP
Sbjct: 200 TQVASHAQKYFIRQLSGGKDKRRASIHDITTVN------------LSDNQTPSPDNKKPP 236

Query: 242 ALGPPGKHRPQQHLPGIGMYGAP 263
           +   P     QQ      ++  P
Sbjct: 260 S--SPDHSMAQQQTSSTSIHKLP 236

[Close]

BLAST of CmaCh11G002610 vs. ExPASy Swiss-Prot
Match: Q2V9B0 (Transcription factor MYB1R1 OS=Solanum tuberosum OX=4113 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.5e-27
Identity = 66/128 (51.56%), Postives = 87/128 (67.97%), Query Frame = 0


Query: 86  NASTKDKDRHLHP---HGATGSDTNKRPNSGFGSGFSGLSHDSSSHATKGGSRSEQERRK 145
           + S  D  ++ HP   +   G D N+        G++     S+  A +  S S +ER++
Sbjct: 39  SVSLNDLSQYEHPNANNNNNGGDNNESSKVAQDEGYA-----SADDAVQHQSNSGRERKR 98

Query: 146 GIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRR 205
           G+PWTEEEH+LFLLGL K GKGDWR ISRNFV +RTPTQVASHAQKYF+R +++NR RRR
Sbjct: 99  GVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSNLNRRRRR 158

Query: 206 SSIHDITS 211
           SS+ DIT+
Sbjct: 159 SSLFDITT 161

[Close]

BLAST of CmaCh11G002610 vs. TAIR 10
Match: AT1G49010.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 292.0 bits (746), Expect = 5.8e-79
Identity = 182/327 (55.66%), Postives = 221/327 (67.58%), Query Frame = 0


Query: 1   MSTGSAAWTKEEDKAFENAIATHWDAPELEGKESEEMWEKIASMLPTKNMEDLKQHYQML 60
           M +  A W++EE+KAFENAIA H     +E + +E+ W K++SM+P+K +E++K+HYQ+L
Sbjct: 1   MESVVATWSREEEKAFENAIALHC----VEEEITEDQWNKMSSMVPSKALEEVKKHYQIL 60

Query: 61  VEDVGAIEAGQVPIPNY----ASVGEETTNASTKDKDRHLHPHGATGSDTNKRPNSGFGS 120
           +EDV AIE GQVP+P Y      + +E   A+T   +R  H  G+    + K+PN     
Sbjct: 61  LEDVKAIENGQVPLPRYHHRKGLIVDEAAAAATSPANRDSHSSGS----SEKKPN----P 120

Query: 121 GFSGLSHDSSSHATKGGSRSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVIS 180
           G SG+S  SS+    GGSR+EQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVIS
Sbjct: 121 GTSGIS--SSNGGRSGGSRAEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVIS 180

Query: 181 RTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGGGDVMAHQAPIT--GHQTNGMN 240
           RTPTQVASHAQKYFIRLNSMNRDRRRSSIHDIT+VNN        QAP    G Q   + 
Sbjct: 181 RTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITTVNN--------QAPAVTGGGQQPQVV 240

Query: 241 QNNPPALGPPGKHRPQQHLP----GIGMY-GAPVGHPVATPPGHMASAVGTPVMLP---- 300
           ++ P    P  + +PQQH P    G+GMY GAPVG P+  PP HM SAVGTPVMLP    
Sbjct: 241 KHRPAQPQPQPQPQPQQHHPPTMAGLGMYGGAPVGQPIIAPPDHMGSAVGTPVMLPPPMG 300

Query: 301 ---HGIHPH---PPYVMPVAYPMAPPP 307
              H  H H    PY +P AYP+ P P
Sbjct: 301 THHHHHHHHLGVAPYAVP-AYPVPPLP 304

[Close]

BLAST of CmaCh11G002610 vs. TAIR 10
Match: AT5G08520.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 235.7 bits (600), Expect = 4.9e-62
Identity = 159/317 (50.16%), Postives = 192/317 (60.57%), Query Frame = 0


Query: 1   MSTGSAAWTKEEDKAFENAIATHWDAPELEGKESEEMWEKIASMLPTKNMEDLKQHYQML 60
           +S GS  W++E+D AFE A+A + D       ESEE WEKIA+ +P K++E +K+HY++L
Sbjct: 6   VSDGS-VWSREDDIAFERALANNTD-------ESEERWEKIAADVPGKSVEQIKEHYELL 65

Query: 61  VEDVGAIEAGQVPIPNYASVGEETTNASTKDKDRHLHPHGATGSDTNKRPNSGFGSGFSG 120
           VEDV  IE+G VP+P Y S                  P G+ G       + G  S   G
Sbjct: 66  VEDVTRIESGCVPLPAYGS------------------PEGSNG----HAGDEGASSKKGG 125

Query: 121 LSHDSSSHATKGGSRSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPT 180
            SH   S+   G S+S+QERRKGI WTE+EHRLFLLGLDK+GKGDWRSISRNFV++RTPT
Sbjct: 126 NSHAGESNQA-GKSKSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPT 185

Query: 181 QVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGGGDVMAHQAPITG-----HQTNGMNQ 240
           QVASHAQKYFIRLNSMN+DRRRSSIHDITSV  G  DV   Q PITG     +  N  N 
Sbjct: 186 QVASHAQKYFIRLNSMNKDRRRSSIHDITSV--GNADVSTPQGPITGQNNSNNNNNNNNN 245

Query: 241 NNPPALGPPG----KHRPQQHLPGIGMYGAP-VGHPVATPPGHMASAVGTPVMLP----- 300
           N+ PA+   G    K    Q  PG  MYG P +G P          AVGTPV LP     
Sbjct: 246 NSSPAVAGGGNKSAKQAVSQAPPGPPMYGTPAIGQP----------AVGTPVNLPAPPHM 279

[Close]

BLAST of CmaCh11G002610 vs. TAIR 10
Match: AT2G38090.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 171.4 bits (433), Expect = 1.1e-42
Identity = 101/208 (48.56%), Postives = 136/208 (65.38%), Query Frame = 0


Query: 8   WTKEEDKAFENAIATHWDAPELEGKESEEMWEKIASMLPTKNMEDLKQHYQMLVEDVGAI 67
           WT EE+K FENA+A +        K++ + W ++A+MLP K + D+ + Y+ L EDV  I
Sbjct: 29  WTAEENKKFENALAFY-------DKDTPDRWSRVAAMLPGKTVGDVIKQYRELEEDVSDI 88

Query: 68  EAGQVPIPNYASVGEETTNASTKDKDRHLHPHGATGSDTNKRPNSGFGSGFSGLSHDSSS 127
           EAG +PIP YAS      ++ T D   +    GA+G+           +GF+   +  S+
Sbjct: 89  EAGLIPIPGYAS------DSFTLDWGGY---DGASGN-----------NGFNMNGYYFSA 148

Query: 128 HATKGGS---RSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVAS 187
              K GS    +E ER+KG+PWTEEEHR FL+GL K+GKGDWR+I+RNFV +RTPTQVAS
Sbjct: 149 AGGKRGSAARTAEHERKKGVPWTEEEHRQFLMGLKKYGKGDWRNIARNFVTTRTPTQVAS 208

Query: 188 HAQKYFIRLNSMNRDRRRSSIHDITSVN 213
           HAQKYFIR  +  +D+RRSSIHDIT+VN
Sbjct: 209 HAQKYFIRQVNGGKDKRRSSIHDITTVN 209

[Close]

BLAST of CmaCh11G002610 vs. TAIR 10
Match: AT5G58900.1 (Homeodomain-like transcriptional regulator )

HSP 1 Score: 171.4 bits (433), Expect = 1.1e-42
Identity = 97/209 (46.41%), Postives = 130/209 (62.20%), Query Frame = 0


Query: 6   AAWTKEEDKAFENAIATHWDAPELEGKESEEMWEKIASMLPTKNMEDLKQHYQMLVEDVG 65
           A WT  E+KAFENA+A + D        + + W+K+A+++P K + D+ + Y  L  DV 
Sbjct: 32  ATWTAAENKAFENALAVYDD-------NTPDRWQKVAAVIPGKTVSDVIRQYNDLEADVS 91

Query: 66  AIEAGQVPIPNYASVGEETTNASTKDKDRHLHPHGATGSDTNKRPNSGFGSGFSGL--SH 125
           +IEAG +P+P Y      T+   T D                    +G G G +G    H
Sbjct: 92  SIEAGLIPVPGYI-----TSPPFTLDW-------------------AGGGGGCNGFKPGH 151

Query: 126 DSSSHATKGGSRSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVA 185
              +  ++ G   E ER+KG+PWTEEEH+LFL+GL K+GKGDWR+ISRNFVI+RTPTQVA
Sbjct: 152 QVCNKRSQAGRSPELERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVA 209

Query: 186 SHAQKYFIRLNSMNRDRRRSSIHDITSVN 213
           SHAQKYFIR  S  +D+RR+SIHDIT+VN
Sbjct: 212 SHAQKYFIRQLSGGKDKRRASIHDITTVN 209

[Close]

BLAST of CmaCh11G002610 vs. TAIR 10
Match: AT3G11280.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 167.9 bits (424), Expect = 1.3e-41
Identity = 97/211 (45.97%), Postives = 125/211 (59.24%), Query Frame = 0


Query: 2   STGSAAWTKEEDKAFENAIATHWDAPELEGKESEEMWEKIASMLPTKNMEDLKQHYQMLV 61
           S+ S +WTKEE+K FE A+A +        ++S + W K+ASM+P K + D+ + Y  L 
Sbjct: 27  SSSSGSWTKEENKMFERALAIY-------AEDSPDRWFKVASMIPGKTVFDVMKQYSKLE 86

Query: 62  EDVGAIEAGQVPIPNYASVGEETTNASTKDKDRHLHPHGATGSDTNKRPNSGFGSGFSGL 121
           EDV  IEAG+VPIP Y +                  P G       KRP+          
Sbjct: 87  EDVFDIEAGRVPIPGYPAASS---------------PLGFDTDMCRKRPS---------- 146

Query: 122 SHDSSSHATKGGSRSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQ 181
                     G   S+Q+R+KG+PWTEEEHR FLLGL K+GKGDWR+ISRNFV+S+TPTQ
Sbjct: 147 ----------GARGSDQDRKKGVPWTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQ 195

Query: 182 VASHAQKYFIRLNSMNRDRRRSSIHDITSVN 213
           VASHAQKY+ R  S  +D+RR SIHDIT+ N
Sbjct: 207 VASHAQKYYQRQLSGAKDKRRPSIHDITTGN 195

The following BLAST results are available for this feature:

BLAST of CmaCh11G002610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B8A9B2	1.1e-71	54.29	Transcription factor MYBS1 OS=Oryza sativa subsp. indica OX=39946 GN=MYBS1 PE=3 ...	[more]
Q8LH59	1.1e-71	54.29	Transcription factor MYBS1 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBS1 PE=...	[more]
Q9FNN6	6.9e-61	50.16	Transcription factor SRM1 OS=Arabidopsis thaliana OX=3702 GN=SRM1 PE=1 SV=1	[more]
Q8S9H7	5.5e-42	40.30	Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 ...	[more]
Q2V9B0	8.5e-27	51.56	Transcription factor MYB1R1 OS=Solanum tuberosum OX=4113 PE=2 SV=1	[more]

BLAST of CmaCh11G002610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49010.1	5.8e-79	55.66	Duplicated homeodomain-like superfamily protein	[more]
AT5G08520.1	4.9e-62	50.16	Duplicated homeodomain-like superfamily protein	[more]
AT2G38090.1	1.1e-42	48.56	Duplicated homeodomain-like superfamily protein	[more]
AT5G58900.1	1.1e-42	46.41	Homeodomain-like transcriptional regulator	[more]
AT3G11280.1	1.3e-41	45.97	Duplicated homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 4..63 e-value: 9.5E-7 score: 38.4 coord: 142..192 e-value: 2.3E-10 score: 50.4
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 1..61 score: 6.875948
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 138..190 score: 7.537855
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 7..61 e-value: 7.04773E-10 score: 51.8074
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 145..190 e-value: 5.08515E-10 score: 52.1926
None	No IPR available	GENE3D	1.10.10.60		coord: 2..74 e-value: 2.1E-18 score: 67.9
None	No IPR available	GENE3D	1.10.10.60		coord: 144..196 e-value: 5.4E-15 score: 57.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..132
None	No IPR available	PANTHER	PTHR44191:SF2	TRANSCRIPTION FACTOR MYBS1	coord: 1..307
None	No IPR available	PANTHER	PTHR44191	TRANSCRIPTION FACTOR KUA1	coord: 1..307
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 142..192 e-value: 4.4E-17 score: 60.1
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 7..60 e-value: 1.0E-7 score: 32.0 coord: 145..189 e-value: 1.5E-10 score: 41.1
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 138..194 score: 16.873135
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 146..194 score: 11.682213
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 140..195
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 7..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G002610.1	CmaCh11G002610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009739	response to gibberellin
biological_process	GO:0009751	response to salicylic acid
biological_process	GO:0009744	response to sucrose
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0042803	protein homodimerization activity