CmaCh11G002600 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G002600
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description40S ribosomal protein S28
LocationCma_Chr11: 1316375 .. 1317959 (-)
RNA-Seq ExpressionCmaCh11G002600
SyntenyCmaCh11G002600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAATGCTAGGTATTTTTTCCCTCCATTTGCTTTGGTCGATCCTGCAGTCCGGCGGCTTGTCTTCAATTCTCACGTCCTCTTTCGTGTAAGGTATCTATCCAATTCCTTCTTCGATCCATGGTGATCTCTTTGGTTCTTTGCTCTGTTCAGATCCGCAGCATTTAAGGCAGTTCTTATTTGACTTCTCTGCGAGATTTTTGGTTCTTTGTATTTTTCTGTTTCTTTTGCCTTTATTCATTACTGTTTTTCATCTGCTGCTGAGAATCACTCGGTCGTTGCTTGTCGAATACCCTGCATAAAATTTTCGAGTACTAATTTAATAAAGACCGTCGTGATTGAAATGATCAAATTAGGGGTGTTTAGCGTTGAAGTTCTTATTCTTGCAGGAGATTGTTTATGAGTTGAAAAACTTGCCATGCTATGCTGATATCTTCCTCGATGCCTTGGTTTAAATATTGAAGTGATTGGAATTTTAACTCGCATGTGCTTTCTTAAAGTTGGGCTCTTTTACTTTACTTTTATAGTTTTATAGAACATTCTGGACTGATATTCATAAGCAATTCTGTTTGCCATCAGTTTTACTTGTTCCTACATTTAATGACTCGTTGGATTGTTCAAAATGGGAACTTGAAGCTGCATAACCAGTAATTTTTGGTAGTTTGTCTTGGAAATTGCTGCTTAGGAGTAATTATTAGGGAAAATATTCGCTTTGGTATTGGTTTTCTAAGATTTGTTTTTCGTGTGTTTGTTTAGGAATGGAATCGCAGATCAAGCATGCTGTGGTGGTCAAAGTGATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTTAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTCAAGGGGCCAGTGAGGGAAGGAGACATTCTTACCCTGTTGGAGTCAGAGAGGGAAGCTAGAAGATTGCGTTGATGGGGATCAAGTTCCCAGTTCTCCGGTTTGCAGTTGCTAAATGTTATCCTTTTATCATACCTACAAATAGAATGCTTTACATCATTTTTCCCTTTTGAAGTGTGATTTTAGTGACTAGCTTCTCCAAGGCTTTGCTTCCATGGCAGAATATGTGAACTGGATGAGTAATTTAATTGAGTTCTGAAACGATAATTTTGTGTTTATTTACCAACTGCTTAATATTTTTGGTGTTACTTCGGTCATGCAAGACTGTTAAGTTTTAAATGATGGTTTCAATAATATGCAATTTAGTCTTATCCAAGAAAATATGTAAATTAGGTGATATAGGATCATAAAATGTATCTCTTTTCTTACACCCTTCATCCTTTTCCCCAGTTCTTGTTCATGGAGTCATGCCCTGTCTAGTCATAATCACCGAGTCTTCCCTCTAGCATCAAAAAGAAGAGAATCCAAGGAAAACCTTATGAAGGCAAGAGCAAGAAAATTCTTTATGTTCATCGACCTATTATATTTATACACGACATTTTAAAAAGTTATGTTATCATTTATTCAGGTCATTTTTCATCATGGATTTTTTAATTGAACTATACTCATATACTCAAATCTATTGAACTATACTCAAGTTGAC

mRNA sequence

ATGCAAATGCTAGGAATGGAATCGCAGATCAAGCATGCTGTGGTGGTCAAAGTGATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTTAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTCAAGGGGCCAGTGAGGGAAGGAGACATTCTTACCCTGTTGGAGTCAGAGAGGGAAGCTAGAAGATTGCGTTGATGGGGATCAAGTTCCCAGTTCTCCGGTTTGCAGTTGCTAAATGTTATCCTTTTATCATACCTACAAATAGAATGCTTTACATCATTTTTCCCTTTTGAAGTGTGATTTTAGTGACTAGCTTCTCCAAGGCTTTGCTTCCATGGCAGAATATGTGAACTGGATGAGTAATTTAATTGAGTTCTGAAACGATAATTTTGTGTTTATTTACCAACTGCTTAATATTTTTGGTGTTACTTCGGTCATGCAAGACTGTTAAGTTTTAAATGATGGTTTCAATAATATGCAATTTAGTCTTATCCAAGAAAATATGTAAATTAGGTGATATAGGATCATAAAATGTATCTCTTTTCTTACACCCTTCATCCTTTTCCCCAGTTCTTGTTCATGGAGTCATGCCCTGTCTAGTCATAATCACCGAGTCTTCCCTCTAGCATCAAAAAGAAGAGAATCCAAGGAAAACCTTATGAAGGCAAGAGCAAGAAAATTCTTTATGTTCATCGACCTATTATATTTATACACGACATTTTAAAAAGTTATGTTATCATTTATTCAGGTCATTTTTCATCATGGATTTTTTAATTGAACTATACTCATATACTCAAATCTATTGAACTATACTCAAGTTGAC

Coding sequence (CDS)

ATGCAAATGCTAGGAATGGAATCGCAGATCAAGCATGCTGTGGTGGTCAAAGTGATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTTAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTCAAGGGGCCAGTGAGGGAAGGAGACATTCTTACCCTGTTGGAGTCAGAGAGGGAAGCTAGAAGATTGCGTTGA

Protein sequence

MQMLGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Homology
[Close]
BLAST of CmaCh11G002600 vs. ExPASy Swiss-Prot
Match: P46302 (40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 8.9e-25
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 6  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 65
          M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1  MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 66 ARRLR 71
          ARRLR
Sbjct: 61 ARRLR 65

[Close]
BLAST of CmaCh11G002600 vs. ExPASy Swiss-Prot
Match: Q9SR73 (40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.5e-24
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 6  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 65
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 66 ARRLR 71
          ARRLR
Sbjct: 61 ARRLR 64

[Close]
BLAST of CmaCh11G002600 vs. ExPASy Swiss-Prot
Match: P34789 (40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.8e-24
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 6  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 65
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 66 ARRLR 71
          ARRLR
Sbjct: 61 ARRLR 64

[Close]
BLAST of CmaCh11G002600 vs. ExPASy Swiss-Prot
Match: Q6PBK3 (40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.7e-20
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0 

Query: 10 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 69
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 70 R 71
          R
Sbjct: 69 R 69

[Close]
BLAST of CmaCh11G002600 vs. ExPASy Swiss-Prot
Match: Q90YP3 (40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.7e-20
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0 

Query: 10 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 69
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 70 R 71
          R
Sbjct: 69 R 69

[Close]
BLAST of CmaCh11G002600 vs. TAIR 10
Match: AT3G10090.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 6  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 65
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 66 ARRLR 71
          ARRLR
Sbjct: 61 ARRLR 64

[Close]
BLAST of CmaCh11G002600 vs. TAIR 10
Match: AT5G03850.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 6  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 65
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 66 ARRLR 71
          ARRLR
Sbjct: 61 ARRLR 64

[Close]
BLAST of CmaCh11G002600 vs. TAIR 10
Match: AT5G64140.1 (ribosomal protein S28 )

HSP 1 Score: 110.9 bits (276), Expect = 4.1e-25
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 6  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 65
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 66 ARRLR 71
          ARRLR
Sbjct: 61 ARRLR 64

The following BLAST results are available for this feature:
BLAST of CmaCh11G002600 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P463028.9e-2590.7740S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1[more]
Q9SR731.5e-2492.3140S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1[more]
P347895.8e-2489.2340S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1[more]
Q6PBK38.7e-2080.3340S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1[more]
Q90YP38.7e-2080.3340S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1[more]
BLAST of CmaCh11G002600 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G10090.11.1e-2592.31Nucleic acid-binding, OB-fold-like protein [more]
AT5G03850.11.1e-2592.31Nucleic acid-binding, OB-fold-like protein [more]
AT5G64140.14.1e-2589.23ribosomal protein S28 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 3..70
e-value: 7.3E-37
score: 127.0
NoneNo IPR availablePANTHERPTHR10769:SF340S RIBOSOMAL PROTEIN S28coord: 6..70
IPR000289Ribosomal protein S28ePFAMPF01200Ribosomal_S28ecoord: 9..69
e-value: 1.5E-32
score: 111.4
IPR000289Ribosomal protein S28ePANTHERPTHR1076940S RIBOSOMAL PROTEIN S28coord: 6..70
IPR000289Ribosomal protein S28eHAMAPMF_00292Ribosomal_S28ecoord: 6..70
score: 21.430906
IPR000289Ribosomal protein S28eCDDcd04457S1_S28Ecoord: 11..70
e-value: 1.34518E-30
score: 99.6319
IPR028626Ribosomal protein S28e conserved sitePROSITEPS00961RIBOSOMAL_S28Ecoord: 61..69
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 6..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G002600.1CmaCh11G002600.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030490 maturation of SSU-rRNA
biological_process GO:0006508 proteolysis
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0003735 structural constituent of ribosome