CmaCh11G002290 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G002290
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionSAM domain-containing protein
LocationCma_Chr11: 1158837 .. 1159670 (-)
RNA-Seq ExpressionCmaCh11G002290
SyntenyCmaCh11G002290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGTTATGAATGTGATGAACTCGAAGAGACAGAGGCGTCCAAATGTTAGGCTTGGGGAAATTGGGGACATATCTGCAGCTTGGGCCTGTGGGTTTTCTCATAGCAATAGGGGAAAGTTAGCTCATAAGGAGTGGAATAGTGATTTGGACCAAACTATGGGTTATGAAGATCATAACCCCATTGTTTTTGGAGATTTGAATCCATTATCTCCCAAGCTCACAATCTCCCCACAAACTTCAACAGAGTTGCAGCACAATGAAGAGGACACCAATAACCCCAAATCTTCTGAATTGGTTTTGGAATGTCCCATGAAGTTTAGTGATGTGACTAGGAAGTGTAGAGATATGAAGCGTCGGGGGCGTAGCAAGAACAGCTACGCCATTCTCGGTGGTAGTTGGAGCTCGAAACATAGCTCCGATGACTTCTCGATGGATGAGAAGGAATGTGAGGGGACAGGTAATTCTGCTAATGGTTTTGGTGACTCCTCTGATCATCAAACACCAACGACTAGCAAAGAGTACGGTATTGACCAACCGTCGATGCATCGAGAGCTTAAGTCAAACAACAATGCGCAATTTACCAGTGAGAAAGCTCGGGCGCAAGAAAGAATGAGATTAGAAGATGAGAATACAAATGCTGTTAGTAGATGGTTAGAGGAGGTTGGATTTGGGAAGTATGCTGGTGTGTTCGAGATGCACGAGGTAGACGAGGAGGCTTTGCCGCTGCTGACCATTGAAGATCTCAAAGAGATCGGCGTATTGTCTGTCGGGTCTCGAAGGAAACTGTACAATGCAATCCAACGGTTAAGAGGAGAGGAAGAAGGTGTTTGA

mRNA sequence

ATGTTGGTTATGAATGTGATGAACTCGAAGAGACAGAGGCGTCCAAATGTTAGGCTTGGGGAAATTGGGGACATATCTGCAGCTTGGGCCTGTGGGTTTTCTCATAGCAATAGGGGAAAGTTAGCTCATAAGGAGTGGAATAGTGATTTGGACCAAACTATGGGTTATGAAGATCATAACCCCATTGTTTTTGGAGATTTGAATCCATTATCTCCCAAGCTCACAATCTCCCCACAAACTTCAACAGAGTTGCAGCACAATGAAGAGGACACCAATAACCCCAAATCTTCTGAATTGGTTTTGGAATGTCCCATGAAGTTTAGTGATGTGACTAGGAAGTGTAGAGATATGAAGCGTCGGGGGCGTAGCAAGAACAGCTACGCCATTCTCGGTGGTAGTTGGAGCTCGAAACATAGCTCCGATGACTTCTCGATGGATGAGAAGGAATGTGAGGGGACAGGTAATTCTGCTAATGGTTTTGGTGACTCCTCTGATCATCAAACACCAACGACTAGCAAAGAGTACGGTATTGACCAACCGTCGATGCATCGAGAGCTTAAGTCAAACAACAATGCGCAATTTACCAGTGAGAAAGCTCGGGCGCAAGAAAGAATGAGATTAGAAGATGAGAATACAAATGCTGTTAGTAGATGGTTAGAGGAGGTTGGATTTGGGAAGTATGCTGGTGTGTTCGAGATGCACGAGGTAGACGAGGAGGCTTTGCCGCTGCTGACCATTGAAGATCTCAAAGAGATCGGCGTATTGTCTGTCGGGTCTCGAAGGAAACTGTACAATGCAATCCAACGGTTAAGAGGAGAGGAAGAAGGTGTTTGA

Coding sequence (CDS)

ATGTTGGTTATGAATGTGATGAACTCGAAGAGACAGAGGCGTCCAAATGTTAGGCTTGGGGAAATTGGGGACATATCTGCAGCTTGGGCCTGTGGGTTTTCTCATAGCAATAGGGGAAAGTTAGCTCATAAGGAGTGGAATAGTGATTTGGACCAAACTATGGGTTATGAAGATCATAACCCCATTGTTTTTGGAGATTTGAATCCATTATCTCCCAAGCTCACAATCTCCCCACAAACTTCAACAGAGTTGCAGCACAATGAAGAGGACACCAATAACCCCAAATCTTCTGAATTGGTTTTGGAATGTCCCATGAAGTTTAGTGATGTGACTAGGAAGTGTAGAGATATGAAGCGTCGGGGGCGTAGCAAGAACAGCTACGCCATTCTCGGTGGTAGTTGGAGCTCGAAACATAGCTCCGATGACTTCTCGATGGATGAGAAGGAATGTGAGGGGACAGGTAATTCTGCTAATGGTTTTGGTGACTCCTCTGATCATCAAACACCAACGACTAGCAAAGAGTACGGTATTGACCAACCGTCGATGCATCGAGAGCTTAAGTCAAACAACAATGCGCAATTTACCAGTGAGAAAGCTCGGGCGCAAGAAAGAATGAGATTAGAAGATGAGAATACAAATGCTGTTAGTAGATGGTTAGAGGAGGTTGGATTTGGGAAGTATGCTGGTGTGTTCGAGATGCACGAGGTAGACGAGGAGGCTTTGCCGCTGCTGACCATTGAAGATCTCAAAGAGATCGGCGTATTGTCTGTCGGGTCTCGAAGGAAACTGTACAATGCAATCCAACGGTTAAGAGGAGAGGAAGAAGGTGTTTGA

Protein sequence

MLVMNVMNSKRQRRPNVRLGEIGDISAAWACGFSHSNRGKLAHKEWNSDLDQTMGYEDHNPIVFGDLNPLSPKLTISPQTSTELQHNEEDTNNPKSSELVLECPMKFSDVTRKCRDMKRRGRSKNSYAILGGSWSSKHSSDDFSMDEKECEGTGNSANGFGDSSDHQTPTTSKEYGIDQPSMHRELKSNNNAQFTSEKARAQERMRLEDENTNAVSRWLEEVGFGKYAGVFEMHEVDEEALPLLTIEDLKEIGVLSVGSRRKLYNAIQRLRGEEEGV
Homology
BLAST of CmaCh11G002290 vs. ExPASy Swiss-Prot
Match: Q9H694 (Protein bicaudal C homolog 1 OS=Homo sapiens OX=9606 GN=BICC1 PE=1 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 3.7e-05
Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 0

Query: 221 EVGFGKYAGVFEMHEVDEEALPLLTIEDLKEIGVLSVGSRRKLYNAIQRL 271
           ++G GKY  VF+  E+D +    LT +DLKE+G+ + G+RRK+  AI  L
Sbjct: 884 KLGLGKYTDVFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAISEL 933

BLAST of CmaCh11G002290 vs. ExPASy Swiss-Prot
Match: Q99MQ1 (Protein bicaudal C homolog 1 OS=Mus musculus OX=10090 GN=Bicc1 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.7e-05
Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 0

Query: 221 EVGFGKYAGVFEMHEVDEEALPLLTIEDLKEIGVLSVGSRRKLYNAIQRL 271
           ++G GKY  VF+  E+D +    LT +DLKE+G+ + G+RRK+  AI  L
Sbjct: 886 KLGLGKYTDVFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAISEL 935

BLAST of CmaCh11G002290 vs. ExPASy Swiss-Prot
Match: Q4ACU6 (SH3 and multiple ankyrin repeat domains protein 3 OS=Mus musculus OX=10090 GN=Shank3 PE=1 SV=3)

HSP 1 Score: 50.4 bits (119), Expect = 3.7e-05
Identity = 24/58 (41.38%), Postives = 34/58 (58.62%), Query Frame = 0

Query: 215  VSRWLEEVGFGKYAGVFEMHEVDEEALPLLTIEDLKEIGVLSVGSRRKLYNAIQRLRG 273
            V  WLE +  G++   FE HE++   LP LT ED  E+GV  VG R  +  A+++L G
Sbjct: 1672 VGDWLESIHLGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRMNIERALRQLDG 1729

BLAST of CmaCh11G002290 vs. ExPASy Swiss-Prot
Match: Q9JLU4 (SH3 and multiple ankyrin repeat domains protein 3 OS=Rattus norvegicus OX=10116 GN=Shank3 PE=1 SV=3)

HSP 1 Score: 50.4 bits (119), Expect = 3.7e-05
Identity = 24/58 (41.38%), Postives = 34/58 (58.62%), Query Frame = 0

Query: 215  VSRWLEEVGFGKYAGVFEMHEVDEEALPLLTIEDLKEIGVLSVGSRRKLYNAIQRLRG 273
            V  WLE +  G++   FE HE++   LP LT ED  E+GV  VG R  +  A+++L G
Sbjct: 1682 VGDWLESIHLGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRMNIERALRQLDG 1739

BLAST of CmaCh11G002290 vs. ExPASy Swiss-Prot
Match: Q5U4T7 (Protein bicaudal C homolog 1-B OS=Xenopus laevis OX=8355 GN=bicc1-b PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 4.8e-05
Identity = 21/50 (42.00%), Postives = 33/50 (66.00%), Query Frame = 0

Query: 221 EVGFGKYAGVFEMHEVDEEALPLLTIEDLKEIGVLSVGSRRKLYNAIQRL 271
           ++G GKY  +F+  E+D +    LT +DLKE+G+ + G+RRK+  AI  L
Sbjct: 880 KLGLGKYTDIFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAISEL 929

BLAST of CmaCh11G002290 vs. TAIR 10
Match: AT5G23680.1 (Sterile alpha motif (SAM) domain-containing protein )

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-15
Identity = 37/59 (62.71%), Postives = 49/59 (83.05%), Query Frame = 0

Query: 215 VSRWLEEVGFGKYAGVFEMHEVDEEALPLLTIEDLKEIGVLSVGSRRKLYNAIQRLRGE 274
           V  WL+E+G G+Y  +FEMHEVDE+ LPLLT+EDLK++G+ +VGSRRK+Y AIQ+L  E
Sbjct: 235 VKIWLQELGLGRYWPMFEMHEVDEQVLPLLTLEDLKDMGINAVGSRRKMYCAIQKLGRE 293

BLAST of CmaCh11G002290 vs. TAIR 10
Match: AT3G48800.1 (Sterile alpha motif (SAM) domain-containing protein )

HSP 1 Score: 80.1 bits (196), Expect = 3.1e-15
Identity = 77/283 (27.21%), Postives = 118/283 (41.70%), Query Frame = 0

Query: 9   SKRQRRPNVRLGEIGDISAAWACGFSHSNRGKLAHKEWNSDLDQTMGYEDHNPIVFGDLN 68
           SKR RRP+VRLGEIG                           DQ      H+        
Sbjct: 35  SKRLRRPSVRLGEIGG--------------------------DQYQQQHHHHAAAAA--- 94

Query: 69  PLSPKLTISPQTSTELQHNEEDTNNPKSSELVLECPMKFSDVTRKCRD------------ 128
               +   S  T T    N +DT+    +  +      + ++     +            
Sbjct: 95  -YDSQGRKSKWTPTTTSGNRKDTSKSSRTRTLTNLSSGYENIGTLDDEREGNVDSFGVGS 154

Query: 129 --MKRRGRSKNSYAILGGSWSSKHSSDDFSMDEKECEGTGNSANGFGDSSDHQTPTTSKE 188
             +K+R  S  +   +  +W SK    D     ++  G      GF D S   + +  KE
Sbjct: 155 WRVKKRVGSSAAAKRVRSNWVSKVGDGD-----EKISGGEELEGGFRDFSREDSESPIKE 214

Query: 189 YGIDQPS----MHRELKSNNNAQFTSEKARAQERMRLEDENTNAVSRWLEEVGFGKYAGV 248
             +D+        R  +SNN++         +    ++      V  WL+E+G G+Y  +
Sbjct: 215 ESLDRDGGGFYGRRRYESNNSS------GNREFESNMDGGGKEGVKIWLQELGLGRYWPM 274

Query: 249 FEMHEVDEEALPLLTIEDLKEIGVLSVGSRRKLYNAIQRLRGE 274
           FE+HEVDEE LPLLT+EDLK++G+ +VGSRRK++ AIQ+L  E
Sbjct: 275 FEIHEVDEEVLPLLTLEDLKDMGINAVGSRRKMFCAIQKLGRE 276

BLAST of CmaCh11G002290 vs. TAIR 10
Match: AT2G45700.1 (sterile alpha motif (SAM) domain-containing protein )

HSP 1 Score: 47.4 bits (111), Expect = 2.2e-05
Identity = 39/140 (27.86%), Postives = 62/140 (44.29%), Query Frame = 0

Query: 136 SKHSSDDFSM---DEKECEGTGNSANGFGDSSDHQTPTTSKEYGIDQPSMHREL-KSNNN 195
           S+  S +FS+   D  +C       +   +        T  +   +QPS    L K  N 
Sbjct: 161 SEGRSGEFSLGKDDSIQCPLCSMDISSLSEEQRQVHSNTCLDKSYNQPSEQDSLRKCENL 220

Query: 196 AQFTSEKARAQERMRLEDENTNAVSRWLEEVGFGKYAGVFEMHEVDEEALPLLTIEDLKE 255
           +    E      ++     + + V +WL  +G  KY  VF   E+D + L  LT EDL  
Sbjct: 221 SSLIKESIDDPVQLPQLVTDLSPVLKWLRSLGLAKYEDVFIREEIDWDTLQSLTEEDLLS 280

Query: 256 IGVLSVGSRRKLYNAIQRLR 272
           IG+ S+G R+K+ NA+  +R
Sbjct: 281 IGITSLGPRKKIVNALSGVR 300

BLAST of CmaCh11G002290 vs. TAIR 10
Match: AT5G48680.1 (Sterile alpha motif (SAM) domain-containing protein )

HSP 1 Score: 43.5 bits (101), Expect = 3.2e-04
Identity = 23/63 (36.51%), Postives = 40/63 (63.49%), Query Frame = 0

Query: 210 ENTNAVSRWLEEVGFGKYAGVFEMHEVDEEALPLLTIEDLKEIGVLSVGSRRKLYNAIQR 269
           +N  +V  +LE +G  KY+  F++ EVD +AL  +T +DLK + ++ +G R+K+  A+  
Sbjct: 145 QNDASVDSFLESLGLEKYSTAFQVEEVDMDALRHMTDDDLKAL-LIPMGPRKKILLALGD 204

Query: 270 LRG 273
            RG
Sbjct: 205 NRG 206

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9H6943.7e-0544.00Protein bicaudal C homolog 1 OS=Homo sapiens OX=9606 GN=BICC1 PE=1 SV=2[more]
Q99MQ13.7e-0544.00Protein bicaudal C homolog 1 OS=Mus musculus OX=10090 GN=Bicc1 PE=1 SV=1[more]
Q4ACU63.7e-0541.38SH3 and multiple ankyrin repeat domains protein 3 OS=Mus musculus OX=10090 GN=Sh... [more]
Q9JLU43.7e-0541.38SH3 and multiple ankyrin repeat domains protein 3 OS=Rattus norvegicus OX=10116 ... [more]
Q5U4T74.8e-0542.00Protein bicaudal C homolog 1-B OS=Xenopus laevis OX=8355 GN=bicc1-b PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT5G23680.11.1e-1562.71Sterile alpha motif (SAM) domain-containing protein [more]
AT3G48800.13.1e-1527.21Sterile alpha motif (SAM) domain-containing protein [more]
AT2G45700.12.2e-0527.86sterile alpha motif (SAM) domain-containing protein [more]
AT5G48680.13.2e-0436.51Sterile alpha motif (SAM) domain-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001660Sterile alpha motif domainSMARTSM00454SAM_4coord: 207..273
e-value: 1.4E-13
score: 61.1
IPR001660Sterile alpha motif domainPFAMPF00536SAM_1coord: 212..271
e-value: 3.0E-15
score: 56.4
IPR001660Sterile alpha motif domainPROSITEPS50105SAM_DOMAINcoord: 210..273
score: 17.079887
IPR013761Sterile alpha motif/pointed domain superfamilyGENE3D1.10.150.50coord: 202..277
e-value: 2.0E-17
score: 65.0
IPR013761Sterile alpha motif/pointed domain superfamilySUPERFAMILY47769SAM/Pointed domaincoord: 211..272
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..177
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..177
NoneNo IPR availablePANTHERPTHR10627SCP160coord: 1..274
NoneNo IPR availablePANTHERPTHR10627:SF65STERILE ALPHA MOTIF/POINTED DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 1..274
NoneNo IPR availableCDDcd09487SAM_superfamilycoord: 215..269
e-value: 6.87534E-20
score: 78.8204

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G002290.1CmaCh11G002290.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding