Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGCCGCGAAAACACCAATCTTTCTCTTTTTTTCAAAGATCCAAAACCAATTTCCCGCTTGAATCATCAAATACAAAACCCCCAAATCCCTTCTTCTTCCCCTCATTCTTCACTTCTTCTTCTTCTTCTTCCTCTCGCTGAATCTCTCTCAAATTTCTGACCTAGCTTTTCCTATCCTATACCGTCGAGCAATGGCGAATGCACCTACCCCAGGCGGGATTTCCAAGATCTTGGCGAATCCATCCCCGGATTCCGCCTCCGATGTCCCTCAGGTTGTGCTTCAGGTCCTCGATCTCAAGGCGACGGGAAATCGCTACATGTTAGTTTTCTTTCACCTTTCTTTGAACTCTGATTAGTACTGTGTTGTTTACTTATGCTCGCTCGAACTGTCTAAGATTCCCTTTTGGTTCCGACCTAAGTTCGGTGATTCATTGTTGACATGCTTGAAAGTTAAAACTCTGGTTTAGATCAAACTGTTTGTGTCGTGTGTATAATCTTTGGATTATCTGCCAGGGGTTCGTGTTTTCATAAATCGTCGCGTTAACGATTAGGGAGATTTCTGTTGATATTTGTGATTGAAGATCTAAAGCTTATATGGGCCGTTTATTTAATTTCTATTACTTCACTTTCAGGTTTACTGCTGCCGATGGGGATATGAAGCTAAAATCCATTCTTCCTTCAAACCTTACGTCAGAGGTCATATCTGGAAACATTCAAAATCTGGGTCTTATTCGCGTTCTTGATTATTCTCTCAATGACATTCCGAACAAGCCAGAAAAGTGAGTTTCGTCTTTCAAATTTTGAGAAATAATCATGTTGCGCCTTCCTAAATTTATATGTAATTGTTCTTTGTTTAGTTATGGTTTGTCATATTTCTTTCTTATTATCAGGTATCTAATCGTGACAAAATGTGAGGTGGTGTCTTCTGCTTTAGACAAGGAGGTAAAATCTGAGGTTAAGAAAGAGGAAGCAGATATTGTTTTGAAACCCAAGCAAGAGTTAGACGATAAGAGTGCGGTTAATACTGGATCTGGTATTCTTTTAAAACCAAAGCAAGAATTGGTTGCCAAATCAGCTGCCCAGATTGTACATGAGCAGCGTACAAAGTGAGTGTACTCTCTTTTAGGAGATCATTTGTTGGACTTAGTTATCAAGTTCACAGTTACTGTATGCAAATACTGATACATGTTTACATGTTTTTGCTTTTCCGTGAACAGTATGGCACCATCTGCACGGATGTCCATGACAAGGCGGGTTCATCCGCTTGTCTACTTAAATCCGTACCAGGGAGATTGGACTATCAAAGTTCGTGTTACAGACAAGGGAAATCTGCGTACATACAAGAATGCCCAGGGAGAAGGTTGTGTTTTCAATGTGGTGTTGGCAGATGAAGATGTAAGTGAATTGCCGATCTGTTAAATCATTACCACTTTTACTTAAACAATTACATTTTATAGTCTCTTGTTGATATGCAAGTGAAGTTACTTGTCTCTTCTTGTTCAGGGGACACAAATACAAGCAACGATGTTCAATGAAGCTGCAAGAAAGTTCTATGAAAAGTTTTCCCTTGGCAAAGTTTACTACGTTTCAAGGGGAACTTTGAAAGTTGCAAATAAAAAATTTAAGACAGTTCAAAATGATTATGAAATGACATTAAATGTGAATTCTCAAGTAGACGAGGTCACCAACGAAGCTGCTTTCGTCCCTGAAACCAAGTTCAATTTTGTCAAGATTGATATGTTAGGTCCTCACGTGAATGGAAGAGAGCTTGTTGGTAAGAATCCTATCCTACCCTAAATAACTTATCCTTGCATGTTTTTTTTTTTTTTTTTTTCCATCTTATAAAGTTAAACATGTTTTTGGAACGGCCAGATGTTATTGGAGTTGTACAAAGTGTTTCTCCTACCATGAGCATTAGAAGGAAAATCAACAATGAGACAGCTCCAAAACGTGATGTAACTATTGCTGATGAGACGTGAGTAGATTTTCTCATTGATGAAAATTGTTGTCTGTTTACATCATTCATATTGAAGTTATGAGTATTAAATTGCAGAAAAAAGACTGTTGTGGTATCTTTGTGGAATGATCTTGCTACCACCGTGGGACAGGAGTTGCTTGACATTGTCGATCAATCTCCCATAATTGCATTGAAGTATCTTAGAGTCGGAGATTTTCAAGGTACTGCTAAAATTGAAGTGATTATATCTGGTAAAATTGAAGCAAACTCTCTTGACATCCTACTTGCTTCCATCTGCAGGTGTATCTTTGTCAACTATAAGTAGGAGCTCAATTTTAATAAATCCCGACATAAAGGAAGCACATCAACTGAGATCATGGTAAGTTTACAGAGTGCAAGTTGAGTTCGTGCCATAATATAATTAGCTATAATAGTAATGCATTTTATATTACCTGCGTATAGGTACGACTCTGAAGGAAAAGCCATATCCATGGCTTCTGTCAGCTCTGGCATGAGCCCCTCATCCAAGAGTGGGTCGAGATCCATGTACACTGACCGGGTCTCCCTGTCTCATATACTCCAAAACAAATCTTTGGGAGAAGAAAAGGTAACATACATACGACCTTTGAATTCAAGAAAGTGAAACTTCTATAGGGAGCAATACTATGAAATATCCATCCCTATAGAACATCTATTTATCAAGAGTAACATGAGTTTTATTATCTCTCCAGCCAATGTTCTTCAGCATAAGAGCATATGTCAGCTTTATTAAGCCTGATCAAACAATGTGGTATCGGGCTTGTAAGACATGCAACAAGAAGGTGACCGATGCCATTGGATCTGGATATTGGTGCGAAAGCTGCCAGAAAAACGACGAAGAGTGCAGCTTAAGGTACATAATGGTCGTAAGAGTTTCTGATGCCAGTTGTGAGGCTTGGCTCTCCACATTCAATGCAGAAGCGGAGAGGATTGTTGGGTGCACTGCTGAAGAGCTTGACGGGCTCAAATCACAGGTAACGAATCAGATAATACAAGAACTTGACATTGAGAACTTGAAGCAAACTTGATTGACCTTTTCTTATGTTTTCAATAGCAGATTGGAGAGGAGGCTTCATATCAGCTGAAACTCAAAGAAGCCACTTGGGTTCCACATTTATTTCGAGTTAGTGTCTCTCAGAATGAGTACAACAATGAGAAGAGGCAAAGGATCACTGTCAGGTCCGTTGCTCCAGTTGACTTCGCTGCCGAGTCCAGATTTTTGCTTGAAGAAATAGCAAAGATGAAAGCTTCGTAGGAGGGGTTTATTGCAGAGCCATGGGTTACTTAGGACTTTGGTAGAAAATTGTAAATTAAATCACCAATTAACAGTCGTTTTCGTTTTTCTTTTCTCTAGTGACAATGGGGGAATGTTTTGTTTATCATCTCAATTCAAGGATGCTTTTGCGTATACTAAGCTTTTATTTCACATTTATGGTGACTAGATGGTTCAAATGACAGAACTTGGAGGATACAAACTTCACTATTGGTA
mRNA sequence
TTGCCGCGAAAACACCAATCTTTCTCTTTTTTTCAAAGATCCAAAACCAATTTCCCGCTTGAATCATCAAATACAAAACCCCCAAATCCCTTCTTCTTCCCCTCATTCTTCACTTCTTCTTCTTCTTCTTCCTCTCGCTGAATCTCTCTCAAATTTCTGACCTAGCTTTTCCTATCCTATACCGTCGAGCAATGGCGAATGCACCTACCCCAGGCGGGATTTCCAAGATCTTGGCGAATCCATCCCCGGATTCCGCCTCCGATGTCCCTCAGGTTGTGCTTCAGGTCCTCGATCTCAAGGCGACGGGAAATCGCTACATGTTTACTGCTGCCGATGGGGATATGAAGCTAAAATCCATTCTTCCTTCAAACCTTACGTCAGAGGTCATATCTGGAAACATTCAAAATCTGGGTCTTATTCGCGTTCTTGATTATTCTCTCAATGACATTCCGAACAAGCCAGAAAAGTATCTAATCGTGACAAAATGTGAGGTGGTGTCTTCTGCTTTAGACAAGGAGGTAAAATCTGAGGTTAAGAAAGAGGAAGCAGATATTGTTTTGAAACCCAAGCAAGAGTTAGACGATAAGAGTGCGGTTAATACTGGATCTGGTATTCTTTTAAAACCAAAGCAAGAATTGGTTGCCAAATCAGCTGCCCAGATTGTACATGAGCAGCGTACAAATATGGCACCATCTGCACGGATGTCCATGACAAGGCGGGTTCATCCGCTTGTCTACTTAAATCCGTACCAGGGAGATTGGACTATCAAAGTTCGTGTTACAGACAAGGGAAATCTGCGTACATACAAGAATGCCCAGGGAGAAGGTTGTGTTTTCAATGTGGTGTTGGCAGATGAAGATGGGACACAAATACAAGCAACGATGTTCAATGAAGCTGCAAGAAAGTTCTATGAAAAGTTTTCCCTTGGCAAAGTTTACTACGTTTCAAGGGGAACTTTGAAAGTTGCAAATAAAAAATTTAAGACAGTTCAAAATGATTATGAAATGACATTAAATGTGAATTCTCAAGTAGACGAGGTCACCAACGAAGCTGCTTTCGTCCCTGAAACCAAGTTCAATTTTGTCAAGATTGATATGTTAGGTCCTCACGTGAATGGAAGAGAGCTTGTTGATGTTATTGGAGTTGTACAAAGTGTTTCTCCTACCATGAGCATTAGAAGGAAAATCAACAATGAGACAGCTCCAAAACGTGATGTAACTATTGCTGATGAGACAAAAAAGACTGTTGTGGTATCTTTGTGGAATGATCTTGCTACCACCGTGGGACAGGAGTTGCTTGACATTGTCGATCAATCTCCCATAATTGCATTGAAGTATCTTAGAGTCGGAGATTTTCAAGGTGTATCTTTGTCAACTATAAGTAGGAGCTCAATTTTAATAAATCCCGACATAAAGGAAGCACATCAACTGAGATCATGGTACGACTCTGAAGGAAAAGCCATATCCATGGCTTCTGTCAGCTCTGGCATGAGCCCCTCATCCAAGAGTGGGTCGAGATCCATGTACACTGACCGGGTCTCCCTGTCTCATATACTCCAAAACAAATCTTTGGGAGAAGAAAAGCCAATGTTCTTCAGCATAAGAGCATATGTCAGCTTTATTAAGCCTGATCAAACAATGTGGTATCGGGCTTGTAAGACATGCAACAAGAAGGTGACCGATGCCATTGGATCTGGATATTGGTGCGAAAGCTGCCAGAAAAACGACGAAGAGTGCAGCTTAAGGTACATAATGGTCGTAAGAGTTTCTGATGCCAGTTGTGAGGCTTGGCTCTCCACATTCAATGCAGAAGCGGAGAGGATTGTTGGGTGCACTGCTGAAGAGCTTGACGGGCTCAAATCACAGATTGGAGAGGAGGCTTCATATCAGCTGAAACTCAAAGAAGCCACTTGGGTTCCACATTTATTTCGAGTTAGTGTCTCTCAGAATGAGTACAACAATGAGAAGAGGCAAAGGATCACTGTCAGGTCCGTTGCTCCAGTTGACTTCGCTGCCGAGTCCAGATTTTTGCTTGAAGAAATAGCAAAGATGAAAGCTTCGTAGGAGGGGTTTATTGCAGAGCCATGGGTTACTTAGGACTTTGGTAGAAAATTGTAAATTAAATCACCAATTAACAGTCGTTTTCGTTTTTCTTTTCTCTAGTGACAATGGGGGAATGTTTTGTTTATCATCTCAATTCAAGGATGCTTTTGCGTATACTAAGCTTTTATTTCACATTTATGGTGACTAGATGGTTCAAATGACAGAACTTGGAGGATACAAACTTCACTATTGGTA
Coding sequence (CDS)
ATGGCGAATGCACCTACCCCAGGCGGGATTTCCAAGATCTTGGCGAATCCATCCCCGGATTCCGCCTCCGATGTCCCTCAGGTTGTGCTTCAGGTCCTCGATCTCAAGGCGACGGGAAATCGCTACATGTTTACTGCTGCCGATGGGGATATGAAGCTAAAATCCATTCTTCCTTCAAACCTTACGTCAGAGGTCATATCTGGAAACATTCAAAATCTGGGTCTTATTCGCGTTCTTGATTATTCTCTCAATGACATTCCGAACAAGCCAGAAAAGTATCTAATCGTGACAAAATGTGAGGTGGTGTCTTCTGCTTTAGACAAGGAGGTAAAATCTGAGGTTAAGAAAGAGGAAGCAGATATTGTTTTGAAACCCAAGCAAGAGTTAGACGATAAGAGTGCGGTTAATACTGGATCTGGTATTCTTTTAAAACCAAAGCAAGAATTGGTTGCCAAATCAGCTGCCCAGATTGTACATGAGCAGCGTACAAATATGGCACCATCTGCACGGATGTCCATGACAAGGCGGGTTCATCCGCTTGTCTACTTAAATCCGTACCAGGGAGATTGGACTATCAAAGTTCGTGTTACAGACAAGGGAAATCTGCGTACATACAAGAATGCCCAGGGAGAAGGTTGTGTTTTCAATGTGGTGTTGGCAGATGAAGATGGGACACAAATACAAGCAACGATGTTCAATGAAGCTGCAAGAAAGTTCTATGAAAAGTTTTCCCTTGGCAAAGTTTACTACGTTTCAAGGGGAACTTTGAAAGTTGCAAATAAAAAATTTAAGACAGTTCAAAATGATTATGAAATGACATTAAATGTGAATTCTCAAGTAGACGAGGTCACCAACGAAGCTGCTTTCGTCCCTGAAACCAAGTTCAATTTTGTCAAGATTGATATGTTAGGTCCTCACGTGAATGGAAGAGAGCTTGTTGATGTTATTGGAGTTGTACAAAGTGTTTCTCCTACCATGAGCATTAGAAGGAAAATCAACAATGAGACAGCTCCAAAACGTGATGTAACTATTGCTGATGAGACAAAAAAGACTGTTGTGGTATCTTTGTGGAATGATCTTGCTACCACCGTGGGACAGGAGTTGCTTGACATTGTCGATCAATCTCCCATAATTGCATTGAAGTATCTTAGAGTCGGAGATTTTCAAGGTGTATCTTTGTCAACTATAAGTAGGAGCTCAATTTTAATAAATCCCGACATAAAGGAAGCACATCAACTGAGATCATGGTACGACTCTGAAGGAAAAGCCATATCCATGGCTTCTGTCAGCTCTGGCATGAGCCCCTCATCCAAGAGTGGGTCGAGATCCATGTACACTGACCGGGTCTCCCTGTCTCATATACTCCAAAACAAATCTTTGGGAGAAGAAAAGCCAATGTTCTTCAGCATAAGAGCATATGTCAGCTTTATTAAGCCTGATCAAACAATGTGGTATCGGGCTTGTAAGACATGCAACAAGAAGGTGACCGATGCCATTGGATCTGGATATTGGTGCGAAAGCTGCCAGAAAAACGACGAAGAGTGCAGCTTAAGGTACATAATGGTCGTAAGAGTTTCTGATGCCAGTTGTGAGGCTTGGCTCTCCACATTCAATGCAGAAGCGGAGAGGATTGTTGGGTGCACTGCTGAAGAGCTTGACGGGCTCAAATCACAGATTGGAGAGGAGGCTTCATATCAGCTGAAACTCAAAGAAGCCACTTGGGTTCCACATTTATTTCGAGTTAGTGTCTCTCAGAATGAGTACAACAATGAGAAGAGGCAAAGGATCACTGTCAGGTCCGTTGCTCCAGTTGACTTCGCTGCCGAGTCCAGATTTTTGCTTGAAGAAATAGCAAAGATGAAAGCTTCGTAG
Protein sequence
MANAPTPGGISKILANPSPDSASDVPQVVLQVLDLKATGNRYMFTAADGDMKLKSILPSNLTSEVISGNIQNLGLIRVLDYSLNDIPNKPEKYLIVTKCEVVSSALDKEVKSEVKKEEADIVLKPKQELDDKSAVNTGSGILLKPKQELVAKSAAQIVHEQRTNMAPSARMSMTRRVHPLVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLADEDGTQIQATMFNEAARKFYEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVTNEAAFVPETKFNFVKIDMLGPHVNGRELVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVVSLWNDLATTVGQELLDIVDQSPIIALKYLRVGDFQGVSLSTISRSSILINPDIKEAHQLRSWYDSEGKAISMASVSSGMSPSSKSGSRSMYTDRVSLSHILQNKSLGEEKPMFFSIRAYVSFIKPDQTMWYRACKTCNKKVTDAIGSGYWCESCQKNDEECSLRYIMVVRVSDASCEAWLSTFNAEAERIVGCTAEELDGLKSQIGEEASYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRSVAPVDFAAESRFLLEEIAKMKAS
Homology
BLAST of CmaCh11G002090 vs. ExPASy Swiss-Prot
Match:
Q9SD82 (Replication protein A 70 kDa DNA-binding subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA1B PE=3 SV=1)
HSP 1 Score: 852.4 bits (2201), Expect = 3.1e-246
Identity = 423/624 (67.79%), Postives = 518/624 (83.01%), Query Frame = 0
Query: 1 MANAPTPGGISKILANPSPDSASDVPQVVLQVLDLKATGNRYMFTAADGDMKLKSILPSN 60
M N+ T GI+ +LAN S DS+S P++V+QV+DLK GNRY F+A DG MK+K++LP+
Sbjct: 1 MENSVTQDGIATVLANQSLDSSSVRPEIVVQVVDLKPAGNRYTFSANDGKMKIKAMLPAT 60
Query: 61 LTSEVISGNIQNLGLIRVLDYSLNDIPNK-PEKYLIVTKCEVVSSALDKEVKSEVKKEEA 120
LTS++ISG IQNLGLIR+L+Y++NDIP K EKY+++TKCE V+SALD E+K+E+K
Sbjct: 61 LTSDIISGKIQNLGLIRLLEYTVNDIPGKSEEKYMLITKCEAVASALDSEIKAEIK---- 120
Query: 121 DIVLKPKQELDDKSAVNTGSGILLKPKQELVAKSAAQIVHEQRTNMAPSARMSMTRRVHP 180
+GI+LKPK E VAKSA+QI++EQR N AP+ARM+MTRRVHP
Sbjct: 121 -----------------ASTGIMLKPKHEFVAKSASQIINEQRGNAAPAARMAMTRRVHP 180
Query: 181 LVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLADEDGTQIQATMFNEAARKF 240
LV LNPYQG WTIKVRVT+KG +RTYKNA+GEGCVFNV L DE+GTQIQATMFN AARKF
Sbjct: 181 LVSLNPYQGSWTIKVRVTNKGVMRTYKNARGEGCVFNVELTDEEGTQIQATMFNAAARKF 240
Query: 241 YEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVTNEAAFVPETKFNFVK 300
Y++F +GKVYY+SRG+LK+ANK+FKTVQNDYEMTLN NS+V+E +NE F PETKFNFV
Sbjct: 241 YDRFEMGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASNEEMFTPETKFNFVP 300
Query: 301 IDMLGPHVNGRELVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVVSLWND 360
ID LG +VN ++L+DVIGVVQSVSPTMSIRRK +NE PKRD+T+ADETKKTVVVSLWND
Sbjct: 301 IDELGTYVNQKDLIDVIGVVQSVSPTMSIRRKNDNEMIPKRDITLADETKKTVVVSLWND 360
Query: 361 LATTVGQELLDIVDQSPIIALKYLRVGDFQGVSLSTISRSSILINPDIKEAHQLRSWYDS 420
LAT +GQELLD+ D P+IA+K L+VG FQGVSLSTISRS+++INP+ EA +L+SWYD+
Sbjct: 361 LATGIGQELLDMADNHPVIAIKSLKVGAFQGVSLSTISRSNVVINPNSPEATKLKSWYDA 420
Query: 421 EGKAISMASVSSGMSPSSKSGSRSMYTDRVSLSHILQNKSLGEEKPMFFSIRAYVSFIKP 480
EGK SM+++ SGMS S+ +GSRSMY+DRV LSHI N SLGEEKP+FFS RAY+SFIKP
Sbjct: 421 EGKETSMSAIGSGMSSSANNGSRSMYSDRVFLSHITSNPSLGEEKPVFFSTRAYISFIKP 480
Query: 481 DQTMWYRACKTCNKKVTDAIGSGYWCESCQKNDEECSLRYIMVVRVSDASCEAWLSTFNA 540
DQTMWYRACKTCNKKVT+A+ SGYWCESCQK D+ECSLRYIM V+VSD++ E WLS FN
Sbjct: 481 DQTMWYRACKTCNKKVTEAMDSGYWCESCQKKDQECSLRYIMAVKVSDSTGETWLSAFND 540
Query: 541 EAERIVGCTAEELDGLKSQIGEEASYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVR 600
EAE+I+GCTA++L+ LKS+ GE +Q KLKEATW HLFR+SVSQ EYN+EKRQRITVR
Sbjct: 541 EAEKIIGCTADDLNDLKSEEGEVNEFQTKLKEATWSSHLFRISVSQQEYNSEKRQRITVR 600
Query: 601 SVAPVDFAAESRFLLEEIAKMKAS 624
V+P+DFAAE+R LL++I+K K S
Sbjct: 601 GVSPIDFAAETRLLLQDISKNKTS 603
BLAST of CmaCh11G002090 vs. ExPASy Swiss-Prot
Match:
Q9FME0 (Replication protein A 70 kDa DNA-binding subunit D OS=Arabidopsis thaliana OX=3702 GN=RPA1D PE=2 SV=1)
HSP 1 Score: 836.6 bits (2160), Expect = 1.8e-241
Identity = 417/622 (67.04%), Postives = 520/622 (83.60%), Query Frame = 0
Query: 1 MANAPTPGGISKILANPSPDSASDVPQVVLQVLDLKATGNRYMFTAADGDMKLKSILPSN 60
M + TP IS +L+NPS DS+SD ++V+QV+DLK GNRY F+A DG K+K++ ++
Sbjct: 1 MQTSVTPDAISTVLSNPSFDSSSDRSEIVVQVVDLKPIGNRYTFSANDGKTKVKAMFTAS 60
Query: 61 LTSEVISGNIQNLGLIRVLDYSLNDIPNKPEKYLIVTKCEVVSSALDKEVKSEVK--KEE 120
LT E+ISG IQNLGLIR++D+++NDI +K KY +VTKCE V S LD E+ + K +EE
Sbjct: 61 LTPEIISGKIQNLGLIRLIDFTVNDISSKSTKYFLVTKCEAVGSVLDSEINLDSKSGEEE 120
Query: 121 ADIVLKPKQELDDKSAVN--TGSGILLKPKQELVAKSAAQIVHEQRTNMAPSARMSMTRR 180
A K K E S +N +GI LKPKQE VAKSA+QI+ EQR N AP+ARM+MTRR
Sbjct: 121 AREPKKQKLEHSPVSPLNDVVSTGITLKPKQEFVAKSASQIMSEQRGNAAPAARMAMTRR 180
Query: 181 VHPLVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLADEDGTQIQATMFNEAA 240
VHPLV LNPYQG+WTIKVRVT+KG +R YKNA+GEGCVFNV L DE+GTQIQATMFN+AA
Sbjct: 181 VHPLVSLNPYQGNWTIKVRVTNKGVMRNYKNARGEGCVFNVELTDEEGTQIQATMFNDAA 240
Query: 241 RKFYEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVTNEAAFVPETKFN 300
RKF+++F LGKVYY+SRG+LK+ANK+FKTVQNDYEMTLN NS+V+E ++E F+PETKFN
Sbjct: 241 RKFFDRFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASSEEMFIPETKFN 300
Query: 301 FVKIDMLGPHVNGRELVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVVSL 360
FV I+ LG +VN +EL+D+IGVVQSVSPTMSIRR+ +NE PKRD+T+ADE++KTVVVSL
Sbjct: 301 FVPIEELGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDITLADESRKTVVVSL 360
Query: 361 WNDLATTVGQELLDIVDQSPIIALKYLRVGDFQGVSLSTISRSSILINPDIKEAHQLRSW 420
WNDLAT +GQELLD+ DQSP+IA+K L+VGDFQGVSLSTISRS+++INP+ EA +L+SW
Sbjct: 361 WNDLATGIGQELLDMADQSPVIAIKSLKVGDFQGVSLSTISRSNVVINPESPEAKKLKSW 420
Query: 421 YDSEGKAISMASVSSGMSPSSKSGSRSMYTDRVSLSHILQNKSLGEEKPMFFSIRAYVSF 480
+DSEGK ISM+S+ SGMSPS+K+GSRS+YTDRV LSHI N SL EEKP+FFS RAY+SF
Sbjct: 421 FDSEGKEISMSSIGSGMSPSAKNGSRSLYTDRVLLSHITSNPSLFEEKPVFFSTRAYISF 480
Query: 481 IKPDQTMWYRACKTCNKKVTDAIGSGYWCESCQKNDEECSLRYIMVVRVSDASCEAWLST 540
IKPDQTMWY+ACKTCNKKVT+A+ SGYWCE CQ+ EECSLRYIM V+V+D+S E W+S+
Sbjct: 481 IKPDQTMWYQACKTCNKKVTEALDSGYWCEGCQRKYEECSLRYIMAVKVTDSSGETWISS 540
Query: 541 FNAEAERIVGCTAEELDGLKSQIGEEASYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRI 600
FN EAE+I+GC+A+EL+ LKS+ GE YQ KLKEATW H+FRVSV+QNEYN EKRQR+
Sbjct: 541 FNDEAEKILGCSADELNKLKSEEGEVNEYQTKLKEATWSSHVFRVSVTQNEYNGEKRQRV 600
Query: 601 TVRSVAPVDFAAESRFLLEEIA 619
TV+ VAP+DFAAE+R LL++I+
Sbjct: 601 TVKGVAPLDFAAETRLLLQDIS 622
BLAST of CmaCh11G002090 vs. ExPASy Swiss-Prot
Match:
Q10Q08 (Replication protein A 70 kDa DNA-binding subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=RPA1B PE=1 SV=1)
HSP 1 Score: 817.8 bits (2111), Expect = 8.6e-236
Identity = 416/626 (66.45%), Postives = 511/626 (81.63%), Query Frame = 0
Query: 2 ANAPTPGGISKILANPSPDSAS--DVPQVVLQVLDLKATGNRYMFTAADGDMKLKSILPS 61
A + TPG ++ +L N SPD+A+ VP++VLQV+DLK G R+ F A+DG K+K++L +
Sbjct: 6 APSVTPGAVAFVLENASPDAATGVPVPEIVLQVVDLKPIGTRFTFLASDGKDKIKTMLLT 65
Query: 62 NLTSEVISGNIQNLGLIRVLDYSLNDIPNKPEKYLIVTKCEVVSSALDKEVKSEVKKEEA 121
L EV SGNIQNLG+IRVLDY+ N I K EK LI+TK EVV ALD E+K E +K+E
Sbjct: 66 QLAPEVRSGNIQNLGVIRVLDYTCNTIGEKQEKVLIITKLEVVFKALDSEIKCEAEKQEE 125
Query: 122 D--IVLKPKQE---LDDKSAVNTGSGILLKPKQELVAKSAAQIVHEQRTNMAPSARMSMT 181
I+L PK+E L + ++LKPKQE+ KSA+QIV+EQR N AP+AR++MT
Sbjct: 126 KPAILLSPKEESVVLSKPTNAPPLPPVVLKPKQEV--KSASQIVNEQRGNAAPAARLAMT 185
Query: 182 RRVHPLVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLADEDGTQIQATMFNE 241
RRVHPL+ LNPYQG+W IKVRVT KGNLRTYKNA+GEGCVFNV L D DGTQIQATMFNE
Sbjct: 186 RRVHPLISLNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVDGTQIQATMFNE 245
Query: 242 AARKFYEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVTNEAAFVPETK 301
AA+KFY F LGKVYY+S+G+L+VANK+FKTV NDYEMTLN N+ V+E E F+P+ +
Sbjct: 246 AAKKFYPMFELGKVYYISKGSLRVANKQFKTVHNDYEMTLNENAVVEEAEGE-TFIPQIQ 305
Query: 302 FNFVKIDMLGPHVNGRELVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVV 361
+NFVKID LGP+V GRELVDVIGVVQSVSPT+S+RRKI+NET PKRD+ +AD++ KTV +
Sbjct: 306 YNFVKIDQLGPYVGGRELVDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTVTI 365
Query: 362 SLWNDLATTVGQELLDIVDQSPIIALKYLRVGDFQGVSLSTISRSSILINPDIKEAHQLR 421
SLWNDLATT GQELLD+VD +PIIA+K L+V DFQG+SLST+ RS+I++NPD+ EA QLR
Sbjct: 366 SLWNDLATTTGQELLDMVDSAPIIAIKSLKVSDFQGLSLSTVGRSTIVVNPDLPEAEQLR 425
Query: 422 SWYDSEGKAISMASVSSGMSPSSKSGSRSMYTDRVSLSHILQNKSLGEEKPMFFSIRAYV 481
+WYDSEGK SMAS+ S M S G+RSMY+DRV LSHI + +LG++KP+FFS+ AY+
Sbjct: 426 AWYDSEGKGTSMASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLGQDKPVFFSLNAYI 485
Query: 482 SFIKPDQTMWYRACKTCNKKVTDAIGSGYWCESCQKNDEECSLRYIMVVRVSDASCEAWL 541
S IKPDQTMWYRACKTCNKKVT+AIGSGYWCE CQKND ECSLRYIMV++VSD + EAWL
Sbjct: 486 SLIKPDQTMWYRACKTCNKKVTEAIGSGYWCEGCQKNDAECSLRYIMVIKVSDPTGEAWL 545
Query: 542 STFNAEAERIVGCTAEELDGLKSQIGEEASYQLKLKEATWVPHLFRVSVSQNEYNNEKRQ 601
S FN +AERIVGC+A+ELD ++ + G++ SY LKLKEATWVPHLFRVSV+QNEY NEKRQ
Sbjct: 546 SLFNDQAERIVGCSADELDRIRKEEGDD-SYLLKLKEATWVPHLFRVSVTQNEYMNEKRQ 605
Query: 602 RITVRSVAPVDFAAESRFLLEEIAKM 621
RITVRS APVD AAE++++LEEIAK+
Sbjct: 606 RITVRSEAPVDHAAEAKYMLEEIAKL 627
BLAST of CmaCh11G002090 vs. ExPASy Swiss-Prot
Match:
Q9SKI4 (Replication protein A 70 kDa DNA-binding subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA1A PE=1 SV=1)
HSP 1 Score: 301.2 bits (770), Expect = 2.7e-80
Identity = 192/627 (30.62%), Postives = 333/627 (53.11%), Query Frame = 0
Query: 29 VLQVLDLKATG-------NRYMFTAADGDMKLKSILPSNLTSEVISGNIQNLGLIRVLDY 88
+LQVL++K G RY F +DG +++ L V SG + +++++DY
Sbjct: 23 LLQVLEIKMIGRSQERSQERYRFLISDGVSAQHAMVAVQLNDRVKSGQFEKGSIVQLIDY 82
Query: 89 SLNDIPNKPEKYLIVTKCEVV--------SSALDKEVKSEVKKEEAD----------IVL 148
+D+ K K ++V E + + + E +E +K + +
Sbjct: 83 ICSDV--KGRKLIVVLNMETIVQQSETIGNPTIFGETDTEAQKTFSGTGNIPPPNRVVFN 142
Query: 149 KPKQELDDKSAVNTGSGILLKPKQELVAKSAAQIVHE---QRTNMAPSARMSMTRRVHPL 208
+P + A G I + + + Q ++ N P + RV P+
Sbjct: 143 EPMVQHSVNRAPPRGVNIQNQANNTPSFRPSVQPSYQPPASYRNHGPIMKNEAPARVIPI 202
Query: 209 VYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLADEDGTQIQATMFNEAARKFY 268
LNPYQG W IK RVT KG++R Y NA+G+G VF+ L D DG +I+ T FN +FY
Sbjct: 203 AALNPYQGRWAIKARVTAKGDIRRYNNAKGDGKVFSFDLLDYDGGEIRVTCFNALVDRFY 262
Query: 269 EKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVTNEAAFVPETKFNFVKI 328
+ +GKVY +S+G+LK A K F ++N++E+ L S V+ +E +P+ +F+F I
Sbjct: 263 DVTEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDGSIPKQQFSFRPI 322
Query: 329 DMLGPHVNGRELVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVVSLWNDL 388
+ + ++DVIGVV SV+P++ I RK ET +R + + DE+ K V V+LW +
Sbjct: 323 SDI-ENAENNTILDVIGVVTSVNPSVPILRKNGMET-HRRILNLKDESGKAVEVTLWGEF 382
Query: 389 ATTVGQELLDIVDQS--PIIALKYLRVGDFQGVSLSTISRSSILINPDIKEAHQLRSWYD 448
G++L ++VD + P++A+K +V DF G S+ TIS + + INPD EAH+LR+W+D
Sbjct: 383 CNRDGRQLEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISSTQLFINPDFPEAHKLRTWFD 442
Query: 449 SEGKAISMASVSSGMSPSSKSGSRSMYTDRVSLSHILQNKSLGEEKPMFFSIRAYVSFIK 508
GK + S+S P G S R ++S I + +KP + +++A +SFIK
Sbjct: 443 YGGKDTASFSISRDTMP----GGVSRNEIRKNVSQIKEEGLGRSDKPDWITVKATISFIK 502
Query: 509 PDQTMWYRAC------KTCNKKVTDAIGSGYWCESCQKNDEECSLRYIMVVRVSDASCEA 568
D + Y AC K CNKKVT + + + C+ C + +EC RY++ V++ D +
Sbjct: 503 TD-SFCYTACPLMIGDKQCNKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLT 562
Query: 569 WLSTFNAEAERIVGCTAEELDGLKSQIGEEASYQLKLKEATWVPHLFRVSVSQNEYNNEK 620
W++ F E I+GC A++L +K ++ +E + +++ + ++ ++ + + Y +E+
Sbjct: 563 WITAFQETGEEIMGCPAKKLYAMKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQ 622
BLAST of CmaCh11G002090 vs. ExPASy Swiss-Prot
Match:
Q6YZ49 (Replication protein A 70 kDa DNA-binding subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=RPA1A PE=1 SV=1)
HSP 1 Score: 293.1 bits (749), Expect = 7.3e-78
Identity = 199/667 (29.84%), Postives = 343/667 (51.42%), Query Frame = 0
Query: 6 TPGGISKILANPSPDSASDVPQVVLQVLDLKAT---------GNRYMFTAADGDMKLKSI 65
TP G++ LA + + VLQ+++L+ G R+ +DG ++
Sbjct: 7 TPNGVAAALAGDTN------LKPVLQIVELRGVQVNGAGVTRGERFRAVVSDGTAASSAL 66
Query: 66 LPSNLTSEVISGNIQNLGLIRVLDYSLNDIPNKPEKYLI-------VTKCEVVS-----S 125
+ L+ SG ++ ++++ +Y +N++ P + ++ V++CE++ S
Sbjct: 67 FAAQLSDHARSGALRRGSIVQLSEYVINEV--GPRRIIVILNLEVLVSECEIIGNPTALS 126
Query: 126 ALDKEVKSEVKKEE--------------ADIVLKPKQE--LDDKSAVNTGSGILLKPKQE 185
+ + + E+ ++ KP L S S +P +
Sbjct: 127 ETGSPIPNPTRVEQFNGAPQYGLMAGNSSNTTTKPSDNVPLFQNSMAGNSSNFATRPSDK 186
Query: 186 L-VAKSAAQIVHEQRTNMAPSARMSMTR---RVHPLVYLNPYQGDWTIKVRVTDKGNLRT 245
+ V + Q + N + R+ P+ LNPYQG W IK RVT KG++R
Sbjct: 187 VPVFQPTVQPSYRPAPNYKNHGAIMKNEAPARIIPISALNPYQGRWAIKARVTAKGDIRR 246
Query: 246 YKNAQGEGCVFNVVLADEDGTQIQATMFNEAARKFYEKFSLGKVYYVSRGTLKVANKKFK 305
Y NA+G+G VF+ L D DG +I+ T FN +FYE +GKVY VSRG L+ A K +
Sbjct: 247 YHNAKGDGKVFSFDLLDSDGGEIRVTCFNALLDRFYEVVEVGKVYVVSRGNLRPAQKNYN 306
Query: 306 TVQNDYEMTLNVNSQVDEVTNEAAFVPETKFNFVKIDMLGPHVNGRELVDVIGVVQSVSP 365
+ N++E+ L S VD +E + +P +F+F I+ + N ++D+IGVV SV+P
Sbjct: 307 HLNNEWEILLENGSTVDLCPDENSSIPTQRFDFRPINEIEDAQN-NAILDIIGVVTSVNP 366
Query: 366 TMSIRRKINNETAPKRDVTIADETKKTVVVSLWNDLATTVGQELLDIVDQS--PIIALKY 425
+I+RK ET KR + + D + ++V V++W D G +L +V++ P++A+K
Sbjct: 367 CTTIQRKNGMET-QKRTMNLKDMSGRSVEVTMWGDFCNREGSQLQGMVERGIFPVLAVKA 426
Query: 426 LRVGDFQGVSLSTISRSSILINPDIKEAHQLRSWYDSEGKAISMASVSSGMSPSSKSGSR 485
+V DF G S+ TIS + + INPD EAH LR W+DS G+ S S+S ++P + SR
Sbjct: 427 GKVSDFSGKSVGTISSTQLFINPDSAEAHSLRQWFDSGGRDASTQSISRDITPGA---SR 486
Query: 486 SMYTDRVSLSHILQNKSLG-EEKPMFFSIRAYVSFIKPDQTMWYRAC------KTCNKKV 545
+ V+ ++++ LG +KP + +++A V F K +++ +Y AC + CNKKV
Sbjct: 487 NEIRKTVAQ---IKDEGLGMGDKPDWITVKATVIFFK-NESFFYTACPNMIGDRQCNKKV 546
Query: 546 TDAIGSGYWCESCQKNDEECSLRYIMVVRVSDASCEAWLSTFNAEAERIVGCTAEELDGL 605
T + + C+ C + EEC RY++ ++ D S AW++ F + ++GC+A EL+ L
Sbjct: 547 TKSTNGNWTCDKCDREFEECDYRYLLQFQIQDHSGTAWVTAFQEAGQELLGCSATELNAL 606
Query: 606 KSQIGEEASYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRSVAPVDFAAESRFLLE 623
K + E+ + + + +L R+ V + Y +E++ + T V VD + ES+FLL+
Sbjct: 607 KER--EDPRFADTMLNCLFQEYLLRLKVKEESYGDERKVKNTAVKVEKVDPSGESKFLLD 654
BLAST of CmaCh11G002090 vs. TAIR 10
Match:
AT5G08020.1 (RPA70-kDa subunit B )
HSP 1 Score: 852.4 bits (2201), Expect = 2.2e-247
Identity = 423/624 (67.79%), Postives = 518/624 (83.01%), Query Frame = 0
Query: 1 MANAPTPGGISKILANPSPDSASDVPQVVLQVLDLKATGNRYMFTAADGDMKLKSILPSN 60
M N+ T GI+ +LAN S DS+S P++V+QV+DLK GNRY F+A DG MK+K++LP+
Sbjct: 1 MENSVTQDGIATVLANQSLDSSSVRPEIVVQVVDLKPAGNRYTFSANDGKMKIKAMLPAT 60
Query: 61 LTSEVISGNIQNLGLIRVLDYSLNDIPNK-PEKYLIVTKCEVVSSALDKEVKSEVKKEEA 120
LTS++ISG IQNLGLIR+L+Y++NDIP K EKY+++TKCE V+SALD E+K+E+K
Sbjct: 61 LTSDIISGKIQNLGLIRLLEYTVNDIPGKSEEKYMLITKCEAVASALDSEIKAEIK---- 120
Query: 121 DIVLKPKQELDDKSAVNTGSGILLKPKQELVAKSAAQIVHEQRTNMAPSARMSMTRRVHP 180
+GI+LKPK E VAKSA+QI++EQR N AP+ARM+MTRRVHP
Sbjct: 121 -----------------ASTGIMLKPKHEFVAKSASQIINEQRGNAAPAARMAMTRRVHP 180
Query: 181 LVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLADEDGTQIQATMFNEAARKF 240
LV LNPYQG WTIKVRVT+KG +RTYKNA+GEGCVFNV L DE+GTQIQATMFN AARKF
Sbjct: 181 LVSLNPYQGSWTIKVRVTNKGVMRTYKNARGEGCVFNVELTDEEGTQIQATMFNAAARKF 240
Query: 241 YEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVTNEAAFVPETKFNFVK 300
Y++F +GKVYY+SRG+LK+ANK+FKTVQNDYEMTLN NS+V+E +NE F PETKFNFV
Sbjct: 241 YDRFEMGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASNEEMFTPETKFNFVP 300
Query: 301 IDMLGPHVNGRELVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVVSLWND 360
ID LG +VN ++L+DVIGVVQSVSPTMSIRRK +NE PKRD+T+ADETKKTVVVSLWND
Sbjct: 301 IDELGTYVNQKDLIDVIGVVQSVSPTMSIRRKNDNEMIPKRDITLADETKKTVVVSLWND 360
Query: 361 LATTVGQELLDIVDQSPIIALKYLRVGDFQGVSLSTISRSSILINPDIKEAHQLRSWYDS 420
LAT +GQELLD+ D P+IA+K L+VG FQGVSLSTISRS+++INP+ EA +L+SWYD+
Sbjct: 361 LATGIGQELLDMADNHPVIAIKSLKVGAFQGVSLSTISRSNVVINPNSPEATKLKSWYDA 420
Query: 421 EGKAISMASVSSGMSPSSKSGSRSMYTDRVSLSHILQNKSLGEEKPMFFSIRAYVSFIKP 480
EGK SM+++ SGMS S+ +GSRSMY+DRV LSHI N SLGEEKP+FFS RAY+SFIKP
Sbjct: 421 EGKETSMSAIGSGMSSSANNGSRSMYSDRVFLSHITSNPSLGEEKPVFFSTRAYISFIKP 480
Query: 481 DQTMWYRACKTCNKKVTDAIGSGYWCESCQKNDEECSLRYIMVVRVSDASCEAWLSTFNA 540
DQTMWYRACKTCNKKVT+A+ SGYWCESCQK D+ECSLRYIM V+VSD++ E WLS FN
Sbjct: 481 DQTMWYRACKTCNKKVTEAMDSGYWCESCQKKDQECSLRYIMAVKVSDSTGETWLSAFND 540
Query: 541 EAERIVGCTAEELDGLKSQIGEEASYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVR 600
EAE+I+GCTA++L+ LKS+ GE +Q KLKEATW HLFR+SVSQ EYN+EKRQRITVR
Sbjct: 541 EAEKIIGCTADDLNDLKSEEGEVNEFQTKLKEATWSSHLFRISVSQQEYNSEKRQRITVR 600
Query: 601 SVAPVDFAAESRFLLEEIAKMKAS 624
V+P+DFAAE+R LL++I+K K S
Sbjct: 601 GVSPIDFAAETRLLLQDISKNKTS 603
BLAST of CmaCh11G002090 vs. TAIR 10
Match:
AT5G61000.1 (Replication factor-A protein 1-related )
HSP 1 Score: 836.6 bits (2160), Expect = 1.3e-242
Identity = 417/622 (67.04%), Postives = 520/622 (83.60%), Query Frame = 0
Query: 1 MANAPTPGGISKILANPSPDSASDVPQVVLQVLDLKATGNRYMFTAADGDMKLKSILPSN 60
M + TP IS +L+NPS DS+SD ++V+QV+DLK GNRY F+A DG K+K++ ++
Sbjct: 1 MQTSVTPDAISTVLSNPSFDSSSDRSEIVVQVVDLKPIGNRYTFSANDGKTKVKAMFTAS 60
Query: 61 LTSEVISGNIQNLGLIRVLDYSLNDIPNKPEKYLIVTKCEVVSSALDKEVKSEVK--KEE 120
LT E+ISG IQNLGLIR++D+++NDI +K KY +VTKCE V S LD E+ + K +EE
Sbjct: 61 LTPEIISGKIQNLGLIRLIDFTVNDISSKSTKYFLVTKCEAVGSVLDSEINLDSKSGEEE 120
Query: 121 ADIVLKPKQELDDKSAVN--TGSGILLKPKQELVAKSAAQIVHEQRTNMAPSARMSMTRR 180
A K K E S +N +GI LKPKQE VAKSA+QI+ EQR N AP+ARM+MTRR
Sbjct: 121 AREPKKQKLEHSPVSPLNDVVSTGITLKPKQEFVAKSASQIMSEQRGNAAPAARMAMTRR 180
Query: 181 VHPLVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLADEDGTQIQATMFNEAA 240
VHPLV LNPYQG+WTIKVRVT+KG +R YKNA+GEGCVFNV L DE+GTQIQATMFN+AA
Sbjct: 181 VHPLVSLNPYQGNWTIKVRVTNKGVMRNYKNARGEGCVFNVELTDEEGTQIQATMFNDAA 240
Query: 241 RKFYEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVTNEAAFVPETKFN 300
RKF+++F LGKVYY+SRG+LK+ANK+FKTVQNDYEMTLN NS+V+E ++E F+PETKFN
Sbjct: 241 RKFFDRFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASSEEMFIPETKFN 300
Query: 301 FVKIDMLGPHVNGRELVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVVSL 360
FV I+ LG +VN +EL+D+IGVVQSVSPTMSIRR+ +NE PKRD+T+ADE++KTVVVSL
Sbjct: 301 FVPIEELGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDITLADESRKTVVVSL 360
Query: 361 WNDLATTVGQELLDIVDQSPIIALKYLRVGDFQGVSLSTISRSSILINPDIKEAHQLRSW 420
WNDLAT +GQELLD+ DQSP+IA+K L+VGDFQGVSLSTISRS+++INP+ EA +L+SW
Sbjct: 361 WNDLATGIGQELLDMADQSPVIAIKSLKVGDFQGVSLSTISRSNVVINPESPEAKKLKSW 420
Query: 421 YDSEGKAISMASVSSGMSPSSKSGSRSMYTDRVSLSHILQNKSLGEEKPMFFSIRAYVSF 480
+DSEGK ISM+S+ SGMSPS+K+GSRS+YTDRV LSHI N SL EEKP+FFS RAY+SF
Sbjct: 421 FDSEGKEISMSSIGSGMSPSAKNGSRSLYTDRVLLSHITSNPSLFEEKPVFFSTRAYISF 480
Query: 481 IKPDQTMWYRACKTCNKKVTDAIGSGYWCESCQKNDEECSLRYIMVVRVSDASCEAWLST 540
IKPDQTMWY+ACKTCNKKVT+A+ SGYWCE CQ+ EECSLRYIM V+V+D+S E W+S+
Sbjct: 481 IKPDQTMWYQACKTCNKKVTEALDSGYWCEGCQRKYEECSLRYIMAVKVTDSSGETWISS 540
Query: 541 FNAEAERIVGCTAEELDGLKSQIGEEASYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRI 600
FN EAE+I+GC+A+EL+ LKS+ GE YQ KLKEATW H+FRVSV+QNEYN EKRQR+
Sbjct: 541 FNDEAEKILGCSADELNKLKSEEGEVNEYQTKLKEATWSSHVFRVSVTQNEYNGEKRQRV 600
Query: 601 TVRSVAPVDFAAESRFLLEEIA 619
TV+ VAP+DFAAE+R LL++I+
Sbjct: 601 TVKGVAPLDFAAETRLLLQDIS 622
BLAST of CmaCh11G002090 vs. TAIR 10
Match:
AT2G06510.1 (replication protein A 1A )
HSP 1 Score: 301.2 bits (770), Expect = 1.9e-81
Identity = 192/627 (30.62%), Postives = 333/627 (53.11%), Query Frame = 0
Query: 29 VLQVLDLKATG-------NRYMFTAADGDMKLKSILPSNLTSEVISGNIQNLGLIRVLDY 88
+LQVL++K G RY F +DG +++ L V SG + +++++DY
Sbjct: 23 LLQVLEIKMIGRSQERSQERYRFLISDGVSAQHAMVAVQLNDRVKSGQFEKGSIVQLIDY 82
Query: 89 SLNDIPNKPEKYLIVTKCEVV--------SSALDKEVKSEVKKEEAD----------IVL 148
+D+ K K ++V E + + + E +E +K + +
Sbjct: 83 ICSDV--KGRKLIVVLNMETIVQQSETIGNPTIFGETDTEAQKTFSGTGNIPPPNRVVFN 142
Query: 149 KPKQELDDKSAVNTGSGILLKPKQELVAKSAAQIVHE---QRTNMAPSARMSMTRRVHPL 208
+P + A G I + + + Q ++ N P + RV P+
Sbjct: 143 EPMVQHSVNRAPPRGVNIQNQANNTPSFRPSVQPSYQPPASYRNHGPIMKNEAPARVIPI 202
Query: 209 VYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLADEDGTQIQATMFNEAARKFY 268
LNPYQG W IK RVT KG++R Y NA+G+G VF+ L D DG +I+ T FN +FY
Sbjct: 203 AALNPYQGRWAIKARVTAKGDIRRYNNAKGDGKVFSFDLLDYDGGEIRVTCFNALVDRFY 262
Query: 269 EKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVTNEAAFVPETKFNFVKI 328
+ +GKVY +S+G+LK A K F ++N++E+ L S V+ +E +P+ +F+F I
Sbjct: 263 DVTEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDGSIPKQQFSFRPI 322
Query: 329 DMLGPHVNGRELVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVVSLWNDL 388
+ + ++DVIGVV SV+P++ I RK ET +R + + DE+ K V V+LW +
Sbjct: 323 SDI-ENAENNTILDVIGVVTSVNPSVPILRKNGMET-HRRILNLKDESGKAVEVTLWGEF 382
Query: 389 ATTVGQELLDIVDQS--PIIALKYLRVGDFQGVSLSTISRSSILINPDIKEAHQLRSWYD 448
G++L ++VD + P++A+K +V DF G S+ TIS + + INPD EAH+LR+W+D
Sbjct: 383 CNRDGRQLEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISSTQLFINPDFPEAHKLRTWFD 442
Query: 449 SEGKAISMASVSSGMSPSSKSGSRSMYTDRVSLSHILQNKSLGEEKPMFFSIRAYVSFIK 508
GK + S+S P G S R ++S I + +KP + +++A +SFIK
Sbjct: 443 YGGKDTASFSISRDTMP----GGVSRNEIRKNVSQIKEEGLGRSDKPDWITVKATISFIK 502
Query: 509 PDQTMWYRAC------KTCNKKVTDAIGSGYWCESCQKNDEECSLRYIMVVRVSDASCEA 568
D + Y AC K CNKKVT + + + C+ C + +EC RY++ V++ D +
Sbjct: 503 TD-SFCYTACPLMIGDKQCNKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLT 562
Query: 569 WLSTFNAEAERIVGCTAEELDGLKSQIGEEASYQLKLKEATWVPHLFRVSVSQNEYNNEK 620
W++ F E I+GC A++L +K ++ +E + +++ + ++ ++ + + Y +E+
Sbjct: 563 WITAFQETGEEIMGCPAKKLYAMKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQ 622
BLAST of CmaCh11G002090 vs. TAIR 10
Match:
AT2G06510.2 (replication protein A 1A )
HSP 1 Score: 297.7 bits (761), Expect = 2.1e-80
Identity = 190/626 (30.35%), Postives = 331/626 (52.88%), Query Frame = 0
Query: 30 LQVLDLKATG-------NRYMFTAADGDMKLKSILPSNLTSEVISGNIQNLGLIRVLDYS 89
+ VL++K G RY F +DG +++ L V SG + +++++DY
Sbjct: 1 MPVLEIKMIGRSQERSQERYRFLISDGVSAQHAMVAVQLNDRVKSGQFEKGSIVQLIDYI 60
Query: 90 LNDIPNKPEKYLIVTKCEVV--------SSALDKEVKSEVKKEEAD----------IVLK 149
+D+ K K ++V E + + + E +E +K + + +
Sbjct: 61 CSDV--KGRKLIVVLNMETIVQQSETIGNPTIFGETDTEAQKTFSGTGNIPPPNRVVFNE 120
Query: 150 PKQELDDKSAVNTGSGILLKPKQELVAKSAAQIVHE---QRTNMAPSARMSMTRRVHPLV 209
P + A G I + + + Q ++ N P + RV P+
Sbjct: 121 PMVQHSVNRAPPRGVNIQNQANNTPSFRPSVQPSYQPPASYRNHGPIMKNEAPARVIPIA 180
Query: 210 YLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLADEDGTQIQATMFNEAARKFYE 269
LNPYQG W IK RVT KG++R Y NA+G+G VF+ L D DG +I+ T FN +FY+
Sbjct: 181 ALNPYQGRWAIKARVTAKGDIRRYNNAKGDGKVFSFDLLDYDGGEIRVTCFNALVDRFYD 240
Query: 270 KFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVTNEAAFVPETKFNFVKID 329
+GKVY +S+G+LK A K F ++N++E+ L S V+ +E +P+ +F+F I
Sbjct: 241 VTEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDGSIPKQQFSFRPIS 300
Query: 330 MLGPHVNGRELVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVVSLWNDLA 389
+ + ++DVIGVV SV+P++ I RK ET +R + + DE+ K V V+LW +
Sbjct: 301 DI-ENAENNTILDVIGVVTSVNPSVPILRKNGMET-HRRILNLKDESGKAVEVTLWGEFC 360
Query: 390 TTVGQELLDIVDQS--PIIALKYLRVGDFQGVSLSTISRSSILINPDIKEAHQLRSWYDS 449
G++L ++VD + P++A+K +V DF G S+ TIS + + INPD EAH+LR+W+D
Sbjct: 361 NRDGRQLEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISSTQLFINPDFPEAHKLRTWFDY 420
Query: 450 EGKAISMASVSSGMSPSSKSGSRSMYTDRVSLSHILQNKSLGEEKPMFFSIRAYVSFIKP 509
GK + S+S P G S R ++S I + +KP + +++A +SFIK
Sbjct: 421 GGKDTASFSISRDTMP----GGVSRNEIRKNVSQIKEEGLGRSDKPDWITVKATISFIKT 480
Query: 510 DQTMWYRAC------KTCNKKVTDAIGSGYWCESCQKNDEECSLRYIMVVRVSDASCEAW 569
D + Y AC K CNKKVT + + + C+ C + +EC RY++ V++ D + W
Sbjct: 481 D-SFCYTACPLMIGDKQCNKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTW 540
Query: 570 LSTFNAEAERIVGCTAEELDGLKSQIGEEASYQLKLKEATWVPHLFRVSVSQNEYNNEKR 620
++ F E I+GC A++L +K ++ +E + +++ + ++ ++ + + Y +E+R
Sbjct: 541 ITAFQETGEEIMGCPAKKLYAMKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQR 600
BLAST of CmaCh11G002090 vs. TAIR 10
Match:
AT5G45400.1 (Replication factor-A protein 1-related )
HSP 1 Score: 284.6 bits (727), Expect = 1.9e-76
Identity = 162/467 (34.69%), Postives = 263/467 (56.32%), Query Frame = 0
Query: 164 NMAPSARMSMTRRVHPLVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLADED 223
N P AR R++P+ LNPYQG WTIKVRVT K +LR + N +GEG +F+ L D D
Sbjct: 286 NRGPVARNEAPPRINPIAALNPYQGRWTIKVRVTSKADLRRFNNPRGEGKLFSFDLLDAD 345
Query: 224 GTQIQATMFNEAARKFYEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEV 283
G +I+ T FN+A +F++K +G VY +SRG LK A K F + NDYE+ L+ S +
Sbjct: 346 GGEIRVTCFNDAVDQFFDKIVVGNVYLISRGNLKPAQKNFNHLPNDYEIHLDSASTIQPC 405
Query: 284 TNEAAFVPETKFNFVKIDMLGPHVNGRELVDVIGVVQSVSPTMSIRRKINNETAPKRDVT 343
++ +P F+F I + ++ DVIG+V S+SPT++I RK N KR +
Sbjct: 406 EDDGT-IPRYHFHFRNIGDI-ENMENNSTTDVIGIVSSISPTVAIMRK-NLTEVQKRSLQ 465
Query: 344 IADETKKTVVVSLWNDLATTVGQELLDIVDQS--PIIALKYLRVGDFQGVSLSTISRSSI 403
+ D + ++V V++W + GQ+L ++ D P++ALK R+G+F G +STI S
Sbjct: 466 LKDMSGRSVEVTMWGNFCNAEGQKLQNLCDSGVFPVLALKAGRIGEFNGKQVSTIGASQF 525
Query: 404 LINPDIKEAHQLRSWYDSEGKAISMASVSSGMSPSSKSGSRSMYTDRVSLSHILQNKSLG 463
I PD EA +LR WY+ EG+ S+S S + R + ++ I K
Sbjct: 526 FIEPDFPEARELRQWYEREGRNAHFTSISREFSGVGRQEVRKV------IAQIKDEKLGT 585
Query: 464 EEKPMFFSIRAYVSFIKPDQTMWYRAC------KTCNKKVTDAIGSGYW-CESCQKNDEE 523
EKP + ++ A +SF+K + Y AC + C+KKVT+ G G W CE C K +E
Sbjct: 586 SEKPDWITVCATISFMKV-ENFCYTACPIMNGDRPCSKKVTNN-GDGTWRCEKCDKCVDE 645
Query: 524 CSLRYIMVVRVSDASCEAWLSTFNAEAERIVGCTAEELDGLKSQIGEEASYQLKLKEATW 583
C RYI+ +++ D + W + F E I+G +A++L +K + +E ++ ++ +
Sbjct: 646 CDYRYILQIQLQDHTDLTWATAFQEAGEEIMGMSAKDLYYVKYENQDEEKFEDIIRSVAF 705
Query: 584 VPHLFRVSVSQNEYNNEKRQRITVRSVAPVDFAAESRFLLEEIAKMK 622
++F++ + + Y++E+R + TV +++++ +RF+LE I K+K
Sbjct: 706 TKYIFKLKIKEETYSDEQRVKATVVKAEKLNYSSNTRFMLEAIDKLK 741
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9SD82 | 3.1e-246 | 67.79 | Replication protein A 70 kDa DNA-binding subunit B OS=Arabidopsis thaliana OX=37... | [more] |
Q9FME0 | 1.8e-241 | 67.04 | Replication protein A 70 kDa DNA-binding subunit D OS=Arabidopsis thaliana OX=37... | [more] |
Q10Q08 | 8.6e-236 | 66.45 | Replication protein A 70 kDa DNA-binding subunit B OS=Oryza sativa subsp. japoni... | [more] |
Q9SKI4 | 2.7e-80 | 30.62 | Replication protein A 70 kDa DNA-binding subunit A OS=Arabidopsis thaliana OX=37... | [more] |
Q6YZ49 | 7.3e-78 | 29.84 | Replication protein A 70 kDa DNA-binding subunit A OS=Oryza sativa subsp. japoni... | [more] |