CmaCh11G002090 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G002090
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Replication protein A subunit
Location	Cma_Chr11: 1047706 .. 1051190 (+)
RNA-Seq Expression	CmaCh11G002090
Synteny	CmaCh11G002090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCCGCGAAAACACCAATCTTTCTCTTTTTTTCAAAGATCCAAAACCAATTTCCCGCTTGAATCATCAAATACAAAACCCCCAAATCCCTTCTTCTTCCCCTCATTCTTCACTTCTTCTTCTTCTTCTTCCTCTCGCTGAATCTCTCTCAAATTTCTGACCTAGCTTTTCCTATCCTATACCGTCGAGCAATGGCGAATGCACCTACCCCAGGCGGGATTTCCAAGATCTTGGCGAATCCATCCCCGGATTCCGCCTCCGATGTCCCTCAGGTTGTGCTTCAGGTCCTCGATCTCAAGGCGACGGGAAATCGCTACATGTTAGTTTTCTTTCACCTTTCTTTGAACTCTGATTAGTACTGTGTTGTTTACTTATGCTCGCTCGAACTGTCTAAGATTCCCTTTTGGTTCCGACCTAAGTTCGGTGATTCATTGTTGACATGCTTGAAAGTTAAAACTCTGGTTTAGATCAAACTGTTTGTGTCGTGTGTATAATCTTTGGATTATCTGCCAGGGGTTCGTGTTTTCATAAATCGTCGCGTTAACGATTAGGGAGATTTCTGTTGATATTTGTGATTGAAGATCTAAAGCTTATATGGGCCGTTTATTTAATTTCTATTACTTCACTTTCAGGTTTACTGCTGCCGATGGGGATATGAAGCTAAAATCCATTCTTCCTTCAAACCTTACGTCAGAGGTCATATCTGGAAACATTCAAAATCTGGGTCTTATTCGCGTTCTTGATTATTCTCTCAATGACATTCCGAACAAGCCAGAAAAGTGAGTTTCGTCTTTCAAATTTTGAGAAATAATCATGTTGCGCCTTCCTAAATTTATATGTAATTGTTCTTTGTTTAGTTATGGTTTGTCATATTTCTTTCTTATTATCAGGTATCTAATCGTGACAAAATGTGAGGTGGTGTCTTCTGCTTTAGACAAGGAGGTAAAATCTGAGGTTAAGAAAGAGGAAGCAGATATTGTTTTGAAACCCAAGCAAGAGTTAGACGATAAGAGTGCGGTTAATACTGGATCTGGTATTCTTTTAAAACCAAAGCAAGAATTGGTTGCCAAATCAGCTGCCCAGATTGTACATGAGCAGCGTACAAAGTGAGTGTACTCTCTTTTAGGAGATCATTTGTTGGACTTAGTTATCAAGTTCACAGTTACTGTATGCAAATACTGATACATGTTTACATGTTTTTGCTTTTCCGTGAACAGTATGGCACCATCTGCACGGATGTCCATGACAAGGCGGGTTCATCCGCTTGTCTACTTAAATCCGTACCAGGGAGATTGGACTATCAAAGTTCGTGTTACAGACAAGGGAAATCTGCGTACATACAAGAATGCCCAGGGAGAAGGTTGTGTTTTCAATGTGGTGTTGGCAGATGAAGATGTAAGTGAATTGCCGATCTGTTAAATCATTACCACTTTTACTTAAACAATTACATTTTATAGTCTCTTGTTGATATGCAAGTGAAGTTACTTGTCTCTTCTTGTTCAGGGGACACAAATACAAGCAACGATGTTCAATGAAGCTGCAAGAAAGTTCTATGAAAAGTTTTCCCTTGGCAAAGTTTACTACGTTTCAAGGGGAACTTTGAAAGTTGCAAATAAAAAATTTAAGACAGTTCAAAATGATTATGAAATGACATTAAATGTGAATTCTCAAGTAGACGAGGTCACCAACGAAGCTGCTTTCGTCCCTGAAACCAAGTTCAATTTTGTCAAGATTGATATGTTAGGTCCTCACGTGAATGGAAGAGAGCTTGTTGGTAAGAATCCTATCCTACCCTAAATAACTTATCCTTGCATGTTTTTTTTTTTTTTTTTTTCCATCTTATAAAGTTAAACATGTTTTTGGAACGGCCAGATGTTATTGGAGTTGTACAAAGTGTTTCTCCTACCATGAGCATTAGAAGGAAAATCAACAATGAGACAGCTCCAAAACGTGATGTAACTATTGCTGATGAGACGTGAGTAGATTTTCTCATTGATGAAAATTGTTGTCTGTTTACATCATTCATATTGAAGTTATGAGTATTAAATTGCAGAAAAAAGACTGTTGTGGTATCTTTGTGGAATGATCTTGCTACCACCGTGGGACAGGAGTTGCTTGACATTGTCGATCAATCTCCCATAATTGCATTGAAGTATCTTAGAGTCGGAGATTTTCAAGGTACTGCTAAAATTGAAGTGATTATATCTGGTAAAATTGAAGCAAACTCTCTTGACATCCTACTTGCTTCCATCTGCAGGTGTATCTTTGTCAACTATAAGTAGGAGCTCAATTTTAATAAATCCCGACATAAAGGAAGCACATCAACTGAGATCATGGTAAGTTTACAGAGTGCAAGTTGAGTTCGTGCCATAATATAATTAGCTATAATAGTAATGCATTTTATATTACCTGCGTATAGGTACGACTCTGAAGGAAAAGCCATATCCATGGCTTCTGTCAGCTCTGGCATGAGCCCCTCATCCAAGAGTGGGTCGAGATCCATGTACACTGACCGGGTCTCCCTGTCTCATATACTCCAAAACAAATCTTTGGGAGAAGAAAAGGTAACATACATACGACCTTTGAATTCAAGAAAGTGAAACTTCTATAGGGAGCAATACTATGAAATATCCATCCCTATAGAACATCTATTTATCAAGAGTAACATGAGTTTTATTATCTCTCCAGCCAATGTTCTTCAGCATAAGAGCATATGTCAGCTTTATTAAGCCTGATCAAACAATGTGGTATCGGGCTTGTAAGACATGCAACAAGAAGGTGACCGATGCCATTGGATCTGGATATTGGTGCGAAAGCTGCCAGAAAAACGACGAAGAGTGCAGCTTAAGGTACATAATGGTCGTAAGAGTTTCTGATGCCAGTTGTGAGGCTTGGCTCTCCACATTCAATGCAGAAGCGGAGAGGATTGTTGGGTGCACTGCTGAAGAGCTTGACGGGCTCAAATCACAGGTAACGAATCAGATAATACAAGAACTTGACATTGAGAACTTGAAGCAAACTTGATTGACCTTTTCTTATGTTTTCAATAGCAGATTGGAGAGGAGGCTTCATATCAGCTGAAACTCAAAGAAGCCACTTGGGTTCCACATTTATTTCGAGTTAGTGTCTCTCAGAATGAGTACAACAATGAGAAGAGGCAAAGGATCACTGTCAGGTCCGTTGCTCCAGTTGACTTCGCTGCCGAGTCCAGATTTTTGCTTGAAGAAATAGCAAAGATGAAAGCTTCGTAGGAGGGGTTTATTGCAGAGCCATGGGTTACTTAGGACTTTGGTAGAAAATTGTAAATTAAATCACCAATTAACAGTCGTTTTCGTTTTTCTTTTCTCTAGTGACAATGGGGGAATGTTTTGTTTATCATCTCAATTCAAGGATGCTTTTGCGTATACTAAGCTTTTATTTCACATTTATGGTGACTAGATGGTTCAAATGACAGAACTTGGAGGATACAAACTTCACTATTGGTA

mRNA sequence

TTGCCGCGAAAACACCAATCTTTCTCTTTTTTTCAAAGATCCAAAACCAATTTCCCGCTTGAATCATCAAATACAAAACCCCCAAATCCCTTCTTCTTCCCCTCATTCTTCACTTCTTCTTCTTCTTCTTCCTCTCGCTGAATCTCTCTCAAATTTCTGACCTAGCTTTTCCTATCCTATACCGTCGAGCAATGGCGAATGCACCTACCCCAGGCGGGATTTCCAAGATCTTGGCGAATCCATCCCCGGATTCCGCCTCCGATGTCCCTCAGGTTGTGCTTCAGGTCCTCGATCTCAAGGCGACGGGAAATCGCTACATGTTTACTGCTGCCGATGGGGATATGAAGCTAAAATCCATTCTTCCTTCAAACCTTACGTCAGAGGTCATATCTGGAAACATTCAAAATCTGGGTCTTATTCGCGTTCTTGATTATTCTCTCAATGACATTCCGAACAAGCCAGAAAAGTATCTAATCGTGACAAAATGTGAGGTGGTGTCTTCTGCTTTAGACAAGGAGGTAAAATCTGAGGTTAAGAAAGAGGAAGCAGATATTGTTTTGAAACCCAAGCAAGAGTTAGACGATAAGAGTGCGGTTAATACTGGATCTGGTATTCTTTTAAAACCAAAGCAAGAATTGGTTGCCAAATCAGCTGCCCAGATTGTACATGAGCAGCGTACAAATATGGCACCATCTGCACGGATGTCCATGACAAGGCGGGTTCATCCGCTTGTCTACTTAAATCCGTACCAGGGAGATTGGACTATCAAAGTTCGTGTTACAGACAAGGGAAATCTGCGTACATACAAGAATGCCCAGGGAGAAGGTTGTGTTTTCAATGTGGTGTTGGCAGATGAAGATGGGACACAAATACAAGCAACGATGTTCAATGAAGCTGCAAGAAAGTTCTATGAAAAGTTTTCCCTTGGCAAAGTTTACTACGTTTCAAGGGGAACTTTGAAAGTTGCAAATAAAAAATTTAAGACAGTTCAAAATGATTATGAAATGACATTAAATGTGAATTCTCAAGTAGACGAGGTCACCAACGAAGCTGCTTTCGTCCCTGAAACCAAGTTCAATTTTGTCAAGATTGATATGTTAGGTCCTCACGTGAATGGAAGAGAGCTTGTTGATGTTATTGGAGTTGTACAAAGTGTTTCTCCTACCATGAGCATTAGAAGGAAAATCAACAATGAGACAGCTCCAAAACGTGATGTAACTATTGCTGATGAGACAAAAAAGACTGTTGTGGTATCTTTGTGGAATGATCTTGCTACCACCGTGGGACAGGAGTTGCTTGACATTGTCGATCAATCTCCCATAATTGCATTGAAGTATCTTAGAGTCGGAGATTTTCAAGGTGTATCTTTGTCAACTATAAGTAGGAGCTCAATTTTAATAAATCCCGACATAAAGGAAGCACATCAACTGAGATCATGGTACGACTCTGAAGGAAAAGCCATATCCATGGCTTCTGTCAGCTCTGGCATGAGCCCCTCATCCAAGAGTGGGTCGAGATCCATGTACACTGACCGGGTCTCCCTGTCTCATATACTCCAAAACAAATCTTTGGGAGAAGAAAAGCCAATGTTCTTCAGCATAAGAGCATATGTCAGCTTTATTAAGCCTGATCAAACAATGTGGTATCGGGCTTGTAAGACATGCAACAAGAAGGTGACCGATGCCATTGGATCTGGATATTGGTGCGAAAGCTGCCAGAAAAACGACGAAGAGTGCAGCTTAAGGTACATAATGGTCGTAAGAGTTTCTGATGCCAGTTGTGAGGCTTGGCTCTCCACATTCAATGCAGAAGCGGAGAGGATTGTTGGGTGCACTGCTGAAGAGCTTGACGGGCTCAAATCACAGATTGGAGAGGAGGCTTCATATCAGCTGAAACTCAAAGAAGCCACTTGGGTTCCACATTTATTTCGAGTTAGTGTCTCTCAGAATGAGTACAACAATGAGAAGAGGCAAAGGATCACTGTCAGGTCCGTTGCTCCAGTTGACTTCGCTGCCGAGTCCAGATTTTTGCTTGAAGAAATAGCAAAGATGAAAGCTTCGTAGGAGGGGTTTATTGCAGAGCCATGGGTTACTTAGGACTTTGGTAGAAAATTGTAAATTAAATCACCAATTAACAGTCGTTTTCGTTTTTCTTTTCTCTAGTGACAATGGGGGAATGTTTTGTTTATCATCTCAATTCAAGGATGCTTTTGCGTATACTAAGCTTTTATTTCACATTTATGGTGACTAGATGGTTCAAATGACAGAACTTGGAGGATACAAACTTCACTATTGGTA

Coding sequence (CDS)

ATGGCGAATGCACCTACCCCAGGCGGGATTTCCAAGATCTTGGCGAATCCATCCCCGGATTCCGCCTCCGATGTCCCTCAGGTTGTGCTTCAGGTCCTCGATCTCAAGGCGACGGGAAATCGCTACATGTTTACTGCTGCCGATGGGGATATGAAGCTAAAATCCATTCTTCCTTCAAACCTTACGTCAGAGGTCATATCTGGAAACATTCAAAATCTGGGTCTTATTCGCGTTCTTGATTATTCTCTCAATGACATTCCGAACAAGCCAGAAAAGTATCTAATCGTGACAAAATGTGAGGTGGTGTCTTCTGCTTTAGACAAGGAGGTAAAATCTGAGGTTAAGAAAGAGGAAGCAGATATTGTTTTGAAACCCAAGCAAGAGTTAGACGATAAGAGTGCGGTTAATACTGGATCTGGTATTCTTTTAAAACCAAAGCAAGAATTGGTTGCCAAATCAGCTGCCCAGATTGTACATGAGCAGCGTACAAATATGGCACCATCTGCACGGATGTCCATGACAAGGCGGGTTCATCCGCTTGTCTACTTAAATCCGTACCAGGGAGATTGGACTATCAAAGTTCGTGTTACAGACAAGGGAAATCTGCGTACATACAAGAATGCCCAGGGAGAAGGTTGTGTTTTCAATGTGGTGTTGGCAGATGAAGATGGGACACAAATACAAGCAACGATGTTCAATGAAGCTGCAAGAAAGTTCTATGAAAAGTTTTCCCTTGGCAAAGTTTACTACGTTTCAAGGGGAACTTTGAAAGTTGCAAATAAAAAATTTAAGACAGTTCAAAATGATTATGAAATGACATTAAATGTGAATTCTCAAGTAGACGAGGTCACCAACGAAGCTGCTTTCGTCCCTGAAACCAAGTTCAATTTTGTCAAGATTGATATGTTAGGTCCTCACGTGAATGGAAGAGAGCTTGTTGATGTTATTGGAGTTGTACAAAGTGTTTCTCCTACCATGAGCATTAGAAGGAAAATCAACAATGAGACAGCTCCAAAACGTGATGTAACTATTGCTGATGAGACAAAAAAGACTGTTGTGGTATCTTTGTGGAATGATCTTGCTACCACCGTGGGACAGGAGTTGCTTGACATTGTCGATCAATCTCCCATAATTGCATTGAAGTATCTTAGAGTCGGAGATTTTCAAGGTGTATCTTTGTCAACTATAAGTAGGAGCTCAATTTTAATAAATCCCGACATAAAGGAAGCACATCAACTGAGATCATGGTACGACTCTGAAGGAAAAGCCATATCCATGGCTTCTGTCAGCTCTGGCATGAGCCCCTCATCCAAGAGTGGGTCGAGATCCATGTACACTGACCGGGTCTCCCTGTCTCATATACTCCAAAACAAATCTTTGGGAGAAGAAAAGCCAATGTTCTTCAGCATAAGAGCATATGTCAGCTTTATTAAGCCTGATCAAACAATGTGGTATCGGGCTTGTAAGACATGCAACAAGAAGGTGACCGATGCCATTGGATCTGGATATTGGTGCGAAAGCTGCCAGAAAAACGACGAAGAGTGCAGCTTAAGGTACATAATGGTCGTAAGAGTTTCTGATGCCAGTTGTGAGGCTTGGCTCTCCACATTCAATGCAGAAGCGGAGAGGATTGTTGGGTGCACTGCTGAAGAGCTTGACGGGCTCAAATCACAGATTGGAGAGGAGGCTTCATATCAGCTGAAACTCAAAGAAGCCACTTGGGTTCCACATTTATTTCGAGTTAGTGTCTCTCAGAATGAGTACAACAATGAGAAGAGGCAAAGGATCACTGTCAGGTCCGTTGCTCCAGTTGACTTCGCTGCCGAGTCCAGATTTTTGCTTGAAGAAATAGCAAAGATGAAAGCTTCGTAG

Protein sequence

MANAPTPGGISKILANPSPDSASDVPQVVLQVLDLKATGNRYMFTAADGDMKLKSILPSNLTSEVISGNIQNLGLIRVLDYSLNDIPNKPEKYLIVTKCEVVSSALDKEVKSEVKKEEADIVLKPKQELDDKSAVNTGSGILLKPKQELVAKSAAQIVHEQRTNMAPSARMSMTRRVHPLVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLADEDGTQIQATMFNEAARKFYEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVTNEAAFVPETKFNFVKIDMLGPHVNGRELVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVVSLWNDLATTVGQELLDIVDQSPIIALKYLRVGDFQGVSLSTISRSSILINPDIKEAHQLRSWYDSEGKAISMASVSSGMSPSSKSGSRSMYTDRVSLSHILQNKSLGEEKPMFFSIRAYVSFIKPDQTMWYRACKTCNKKVTDAIGSGYWCESCQKNDEECSLRYIMVVRVSDASCEAWLSTFNAEAERIVGCTAEELDGLKSQIGEEASYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRSVAPVDFAAESRFLLEEIAKMKAS

Homology

[Close]

BLAST of CmaCh11G002090 vs. ExPASy Swiss-Prot
Match: Q9SD82 (Replication protein A 70 kDa DNA-binding subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA1B PE=3 SV=1)

HSP 1 Score: 852.4 bits (2201), Expect = 3.1e-246
Identity = 423/624 (67.79%), Postives = 518/624 (83.01%), Query Frame = 0


Query: 1   MANAPTPGGISKILANPSPDSASDVPQVVLQVLDLKATGNRYMFTAADGDMKLKSILPSN 60
           M N+ T  GI+ +LAN S DS+S  P++V+QV+DLK  GNRY F+A DG MK+K++LP+ 
Sbjct: 1   MENSVTQDGIATVLANQSLDSSSVRPEIVVQVVDLKPAGNRYTFSANDGKMKIKAMLPAT 60

Query: 61  LTSEVISGNIQNLGLIRVLDYSLNDIPNK-PEKYLIVTKCEVVSSALDKEVKSEVKKEEA 120
           LTS++ISG IQNLGLIR+L+Y++NDIP K  EKY+++TKCE V+SALD E+K+E+K    
Sbjct: 61  LTSDIISGKIQNLGLIRLLEYTVNDIPGKSEEKYMLITKCEAVASALDSEIKAEIK---- 120

Query: 121 DIVLKPKQELDDKSAVNTGSGILLKPKQELVAKSAAQIVHEQRTNMAPSARMSMTRRVHP 180
                              +GI+LKPK E VAKSA+QI++EQR N AP+ARM+MTRRVHP
Sbjct: 121 -----------------ASTGIMLKPKHEFVAKSASQIINEQRGNAAPAARMAMTRRVHP 180

Query: 181 LVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLADEDGTQIQATMFNEAARKF 240
           LV LNPYQG WTIKVRVT+KG +RTYKNA+GEGCVFNV L DE+GTQIQATMFN AARKF
Sbjct: 181 LVSLNPYQGSWTIKVRVTNKGVMRTYKNARGEGCVFNVELTDEEGTQIQATMFNAAARKF 240

Query: 241 YEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVTNEAAFVPETKFNFVK 300
           Y++F +GKVYY+SRG+LK+ANK+FKTVQNDYEMTLN NS+V+E +NE  F PETKFNFV 
Sbjct: 241 YDRFEMGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASNEEMFTPETKFNFVP 300

Query: 301 IDMLGPHVNGRELVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVVSLWND 360
           ID LG +VN ++L+DVIGVVQSVSPTMSIRRK +NE  PKRD+T+ADETKKTVVVSLWND
Sbjct: 301 IDELGTYVNQKDLIDVIGVVQSVSPTMSIRRKNDNEMIPKRDITLADETKKTVVVSLWND 360

Query: 361 LATTVGQELLDIVDQSPIIALKYLRVGDFQGVSLSTISRSSILINPDIKEAHQLRSWYDS 420
           LAT +GQELLD+ D  P+IA+K L+VG FQGVSLSTISRS+++INP+  EA +L+SWYD+
Sbjct: 361 LATGIGQELLDMADNHPVIAIKSLKVGAFQGVSLSTISRSNVVINPNSPEATKLKSWYDA 420

Query: 421 EGKAISMASVSSGMSPSSKSGSRSMYTDRVSLSHILQNKSLGEEKPMFFSIRAYVSFIKP 480
           EGK  SM+++ SGMS S+ +GSRSMY+DRV LSHI  N SLGEEKP+FFS RAY+SFIKP
Sbjct: 421 EGKETSMSAIGSGMSSSANNGSRSMYSDRVFLSHITSNPSLGEEKPVFFSTRAYISFIKP 480

Query: 481 DQTMWYRACKTCNKKVTDAIGSGYWCESCQKNDEECSLRYIMVVRVSDASCEAWLSTFNA 540
           DQTMWYRACKTCNKKVT+A+ SGYWCESCQK D+ECSLRYIM V+VSD++ E WLS FN 
Sbjct: 481 DQTMWYRACKTCNKKVTEAMDSGYWCESCQKKDQECSLRYIMAVKVSDSTGETWLSAFND 540

Query: 541 EAERIVGCTAEELDGLKSQIGEEASYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVR 600
           EAE+I+GCTA++L+ LKS+ GE   +Q KLKEATW  HLFR+SVSQ EYN+EKRQRITVR
Sbjct: 541 EAEKIIGCTADDLNDLKSEEGEVNEFQTKLKEATWSSHLFRISVSQQEYNSEKRQRITVR 600

Query: 601 SVAPVDFAAESRFLLEEIAKMKAS 624
            V+P+DFAAE+R LL++I+K K S
Sbjct: 601 GVSPIDFAAETRLLLQDISKNKTS 603

[Close]

BLAST of CmaCh11G002090 vs. ExPASy Swiss-Prot
Match: Q9FME0 (Replication protein A 70 kDa DNA-binding subunit D OS=Arabidopsis thaliana OX=3702 GN=RPA1D PE=2 SV=1)

HSP 1 Score: 836.6 bits (2160), Expect = 1.8e-241
Identity = 417/622 (67.04%), Postives = 520/622 (83.60%), Query Frame = 0


Query: 1   MANAPTPGGISKILANPSPDSASDVPQVVLQVLDLKATGNRYMFTAADGDMKLKSILPSN 60
           M  + TP  IS +L+NPS DS+SD  ++V+QV+DLK  GNRY F+A DG  K+K++  ++
Sbjct: 1   MQTSVTPDAISTVLSNPSFDSSSDRSEIVVQVVDLKPIGNRYTFSANDGKTKVKAMFTAS 60

Query: 61  LTSEVISGNIQNLGLIRVLDYSLNDIPNKPEKYLIVTKCEVVSSALDKEVKSEVK--KEE 120
           LT E+ISG IQNLGLIR++D+++NDI +K  KY +VTKCE V S LD E+  + K  +EE
Sbjct: 61  LTPEIISGKIQNLGLIRLIDFTVNDISSKSTKYFLVTKCEAVGSVLDSEINLDSKSGEEE 120

Query: 121 ADIVLKPKQELDDKSAVN--TGSGILLKPKQELVAKSAAQIVHEQRTNMAPSARMSMTRR 180
           A    K K E    S +N    +GI LKPKQE VAKSA+QI+ EQR N AP+ARM+MTRR
Sbjct: 121 AREPKKQKLEHSPVSPLNDVVSTGITLKPKQEFVAKSASQIMSEQRGNAAPAARMAMTRR 180

Query: 181 VHPLVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLADEDGTQIQATMFNEAA 240
           VHPLV LNPYQG+WTIKVRVT+KG +R YKNA+GEGCVFNV L DE+GTQIQATMFN+AA
Sbjct: 181 VHPLVSLNPYQGNWTIKVRVTNKGVMRNYKNARGEGCVFNVELTDEEGTQIQATMFNDAA 240

Query: 241 RKFYEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVTNEAAFVPETKFN 300
           RKF+++F LGKVYY+SRG+LK+ANK+FKTVQNDYEMTLN NS+V+E ++E  F+PETKFN
Sbjct: 241 RKFFDRFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASSEEMFIPETKFN 300

Query: 301 FVKIDMLGPHVNGRELVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVVSL 360
           FV I+ LG +VN +EL+D+IGVVQSVSPTMSIRR+ +NE  PKRD+T+ADE++KTVVVSL
Sbjct: 301 FVPIEELGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDITLADESRKTVVVSL 360

Query: 361 WNDLATTVGQELLDIVDQSPIIALKYLRVGDFQGVSLSTISRSSILINPDIKEAHQLRSW 420
           WNDLAT +GQELLD+ DQSP+IA+K L+VGDFQGVSLSTISRS+++INP+  EA +L+SW
Sbjct: 361 WNDLATGIGQELLDMADQSPVIAIKSLKVGDFQGVSLSTISRSNVVINPESPEAKKLKSW 420

Query: 421 YDSEGKAISMASVSSGMSPSSKSGSRSMYTDRVSLSHILQNKSLGEEKPMFFSIRAYVSF 480
           +DSEGK ISM+S+ SGMSPS+K+GSRS+YTDRV LSHI  N SL EEKP+FFS RAY+SF
Sbjct: 421 FDSEGKEISMSSIGSGMSPSAKNGSRSLYTDRVLLSHITSNPSLFEEKPVFFSTRAYISF 480

Query: 481 IKPDQTMWYRACKTCNKKVTDAIGSGYWCESCQKNDEECSLRYIMVVRVSDASCEAWLST 540
           IKPDQTMWY+ACKTCNKKVT+A+ SGYWCE CQ+  EECSLRYIM V+V+D+S E W+S+
Sbjct: 481 IKPDQTMWYQACKTCNKKVTEALDSGYWCEGCQRKYEECSLRYIMAVKVTDSSGETWISS 540

Query: 541 FNAEAERIVGCTAEELDGLKSQIGEEASYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRI 600
           FN EAE+I+GC+A+EL+ LKS+ GE   YQ KLKEATW  H+FRVSV+QNEYN EKRQR+
Sbjct: 541 FNDEAEKILGCSADELNKLKSEEGEVNEYQTKLKEATWSSHVFRVSVTQNEYNGEKRQRV 600

Query: 601 TVRSVAPVDFAAESRFLLEEIA 619
           TV+ VAP+DFAAE+R LL++I+
Sbjct: 601 TVKGVAPLDFAAETRLLLQDIS 622

[Close]

BLAST of CmaCh11G002090 vs. ExPASy Swiss-Prot
Match: Q10Q08 (Replication protein A 70 kDa DNA-binding subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=RPA1B PE=1 SV=1)

HSP 1 Score: 817.8 bits (2111), Expect = 8.6e-236
Identity = 416/626 (66.45%), Postives = 511/626 (81.63%), Query Frame = 0


Query: 2   ANAPTPGGISKILANPSPDSAS--DVPQVVLQVLDLKATGNRYMFTAADGDMKLKSILPS 61
           A + TPG ++ +L N SPD+A+   VP++VLQV+DLK  G R+ F A+DG  K+K++L +
Sbjct: 6   APSVTPGAVAFVLENASPDAATGVPVPEIVLQVVDLKPIGTRFTFLASDGKDKIKTMLLT 65

Query: 62  NLTSEVISGNIQNLGLIRVLDYSLNDIPNKPEKYLIVTKCEVVSSALDKEVKSEVKKEEA 121
            L  EV SGNIQNLG+IRVLDY+ N I  K EK LI+TK EVV  ALD E+K E +K+E 
Sbjct: 66  QLAPEVRSGNIQNLGVIRVLDYTCNTIGEKQEKVLIITKLEVVFKALDSEIKCEAEKQEE 125

Query: 122 D--IVLKPKQE---LDDKSAVNTGSGILLKPKQELVAKSAAQIVHEQRTNMAPSARMSMT 181
              I+L PK+E   L   +       ++LKPKQE+  KSA+QIV+EQR N AP+AR++MT
Sbjct: 126 KPAILLSPKEESVVLSKPTNAPPLPPVVLKPKQEV--KSASQIVNEQRGNAAPAARLAMT 185

Query: 182 RRVHPLVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLADEDGTQIQATMFNE 241
           RRVHPL+ LNPYQG+W IKVRVT KGNLRTYKNA+GEGCVFNV L D DGTQIQATMFNE
Sbjct: 186 RRVHPLISLNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVDGTQIQATMFNE 245

Query: 242 AARKFYEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVTNEAAFVPETK 301
           AA+KFY  F LGKVYY+S+G+L+VANK+FKTV NDYEMTLN N+ V+E   E  F+P+ +
Sbjct: 246 AAKKFYPMFELGKVYYISKGSLRVANKQFKTVHNDYEMTLNENAVVEEAEGE-TFIPQIQ 305

Query: 302 FNFVKIDMLGPHVNGRELVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVV 361
           +NFVKID LGP+V GRELVDVIGVVQSVSPT+S+RRKI+NET PKRD+ +AD++ KTV +
Sbjct: 306 YNFVKIDQLGPYVGGRELVDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTVTI 365

Query: 362 SLWNDLATTVGQELLDIVDQSPIIALKYLRVGDFQGVSLSTISRSSILINPDIKEAHQLR 421
           SLWNDLATT GQELLD+VD +PIIA+K L+V DFQG+SLST+ RS+I++NPD+ EA QLR
Sbjct: 366 SLWNDLATTTGQELLDMVDSAPIIAIKSLKVSDFQGLSLSTVGRSTIVVNPDLPEAEQLR 425

Query: 422 SWYDSEGKAISMASVSSGMSPSSKSGSRSMYTDRVSLSHILQNKSLGEEKPMFFSIRAYV 481
           +WYDSEGK  SMAS+ S M  S   G+RSMY+DRV LSHI  + +LG++KP+FFS+ AY+
Sbjct: 426 AWYDSEGKGTSMASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLGQDKPVFFSLNAYI 485

Query: 482 SFIKPDQTMWYRACKTCNKKVTDAIGSGYWCESCQKNDEECSLRYIMVVRVSDASCEAWL 541
           S IKPDQTMWYRACKTCNKKVT+AIGSGYWCE CQKND ECSLRYIMV++VSD + EAWL
Sbjct: 486 SLIKPDQTMWYRACKTCNKKVTEAIGSGYWCEGCQKNDAECSLRYIMVIKVSDPTGEAWL 545

Query: 542 STFNAEAERIVGCTAEELDGLKSQIGEEASYQLKLKEATWVPHLFRVSVSQNEYNNEKRQ 601
           S FN +AERIVGC+A+ELD ++ + G++ SY LKLKEATWVPHLFRVSV+QNEY NEKRQ
Sbjct: 546 SLFNDQAERIVGCSADELDRIRKEEGDD-SYLLKLKEATWVPHLFRVSVTQNEYMNEKRQ 605

Query: 602 RITVRSVAPVDFAAESRFLLEEIAKM 621
           RITVRS APVD AAE++++LEEIAK+
Sbjct: 606 RITVRSEAPVDHAAEAKYMLEEIAKL 627

[Close]

BLAST of CmaCh11G002090 vs. ExPASy Swiss-Prot
Match: Q9SKI4 (Replication protein A 70 kDa DNA-binding subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA1A PE=1 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.7e-80
Identity = 192/627 (30.62%), Postives = 333/627 (53.11%), Query Frame = 0


Query: 29  VLQVLDLKATG-------NRYMFTAADGDMKLKSILPSNLTSEVISGNIQNLGLIRVLDY 88
           +LQVL++K  G        RY F  +DG     +++   L   V SG  +   +++++DY
Sbjct: 23  LLQVLEIKMIGRSQERSQERYRFLISDGVSAQHAMVAVQLNDRVKSGQFEKGSIVQLIDY 82

Query: 89  SLNDIPNKPEKYLIVTKCEVV--------SSALDKEVKSEVKKEEAD----------IVL 148
             +D+  K  K ++V   E +        +  +  E  +E +K  +           +  
Sbjct: 83  ICSDV--KGRKLIVVLNMETIVQQSETIGNPTIFGETDTEAQKTFSGTGNIPPPNRVVFN 142

Query: 149 KPKQELDDKSAVNTGSGILLKPKQELVAKSAAQIVHE---QRTNMAPSARMSMTRRVHPL 208
           +P  +     A   G  I  +       + + Q  ++      N  P  +     RV P+
Sbjct: 143 EPMVQHSVNRAPPRGVNIQNQANNTPSFRPSVQPSYQPPASYRNHGPIMKNEAPARVIPI 202

Query: 209 VYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLADEDGTQIQATMFNEAARKFY 268
             LNPYQG W IK RVT KG++R Y NA+G+G VF+  L D DG +I+ T FN    +FY
Sbjct: 203 AALNPYQGRWAIKARVTAKGDIRRYNNAKGDGKVFSFDLLDYDGGEIRVTCFNALVDRFY 262

Query: 269 EKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVTNEAAFVPETKFNFVKI 328
           +   +GKVY +S+G+LK A K F  ++N++E+ L   S V+   +E   +P+ +F+F  I
Sbjct: 263 DVTEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDGSIPKQQFSFRPI 322

Query: 329 DMLGPHVNGRELVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVVSLWNDL 388
             +  +     ++DVIGVV SV+P++ I RK   ET  +R + + DE+ K V V+LW + 
Sbjct: 323 SDI-ENAENNTILDVIGVVTSVNPSVPILRKNGMET-HRRILNLKDESGKAVEVTLWGEF 382

Query: 389 ATTVGQELLDIVDQS--PIIALKYLRVGDFQGVSLSTISRSSILINPDIKEAHQLRSWYD 448
               G++L ++VD +  P++A+K  +V DF G S+ TIS + + INPD  EAH+LR+W+D
Sbjct: 383 CNRDGRQLEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISSTQLFINPDFPEAHKLRTWFD 442

Query: 449 SEGKAISMASVSSGMSPSSKSGSRSMYTDRVSLSHILQNKSLGEEKPMFFSIRAYVSFIK 508
             GK  +  S+S    P    G  S    R ++S I +      +KP + +++A +SFIK
Sbjct: 443 YGGKDTASFSISRDTMP----GGVSRNEIRKNVSQIKEEGLGRSDKPDWITVKATISFIK 502

Query: 509 PDQTMWYRAC------KTCNKKVTDAIGSGYWCESCQKNDEECSLRYIMVVRVSDASCEA 568
            D +  Y AC      K CNKKVT +  + + C+ C +  +EC  RY++ V++ D +   
Sbjct: 503 TD-SFCYTACPLMIGDKQCNKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLT 562

Query: 569 WLSTFNAEAERIVGCTAEELDGLKSQIGEEASYQLKLKEATWVPHLFRVSVSQNEYNNEK 620
           W++ F    E I+GC A++L  +K ++ +E  +   +++  +  ++ ++ + +  Y +E+
Sbjct: 563 WITAFQETGEEIMGCPAKKLYAMKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQ 622

[Close]

BLAST of CmaCh11G002090 vs. ExPASy Swiss-Prot
Match: Q6YZ49 (Replication protein A 70 kDa DNA-binding subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=RPA1A PE=1 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 7.3e-78
Identity = 199/667 (29.84%), Postives = 343/667 (51.42%), Query Frame = 0


Query: 6   TPGGISKILANPSPDSASDVPQVVLQVLDLKAT---------GNRYMFTAADGDMKLKSI 65
           TP G++  LA  +        + VLQ+++L+           G R+    +DG     ++
Sbjct: 7   TPNGVAAALAGDTN------LKPVLQIVELRGVQVNGAGVTRGERFRAVVSDGTAASSAL 66

Query: 66  LPSNLTSEVISGNIQNLGLIRVLDYSLNDIPNKPEKYLI-------VTKCEVVS-----S 125
             + L+    SG ++   ++++ +Y +N++   P + ++       V++CE++      S
Sbjct: 67  FAAQLSDHARSGALRRGSIVQLSEYVINEV--GPRRIIVILNLEVLVSECEIIGNPTALS 126

Query: 126 ALDKEVKSEVKKEE--------------ADIVLKPKQE--LDDKSAVNTGSGILLKPKQE 185
                + +  + E+              ++   KP     L   S     S    +P  +
Sbjct: 127 ETGSPIPNPTRVEQFNGAPQYGLMAGNSSNTTTKPSDNVPLFQNSMAGNSSNFATRPSDK 186

Query: 186 L-VAKSAAQIVHEQRTNMAPSARMSMTR---RVHPLVYLNPYQGDWTIKVRVTDKGNLRT 245
           + V +   Q  +    N      +       R+ P+  LNPYQG W IK RVT KG++R 
Sbjct: 187 VPVFQPTVQPSYRPAPNYKNHGAIMKNEAPARIIPISALNPYQGRWAIKARVTAKGDIRR 246

Query: 246 YKNAQGEGCVFNVVLADEDGTQIQATMFNEAARKFYEKFSLGKVYYVSRGTLKVANKKFK 305
           Y NA+G+G VF+  L D DG +I+ T FN    +FYE   +GKVY VSRG L+ A K + 
Sbjct: 247 YHNAKGDGKVFSFDLLDSDGGEIRVTCFNALLDRFYEVVEVGKVYVVSRGNLRPAQKNYN 306

Query: 306 TVQNDYEMTLNVNSQVDEVTNEAAFVPETKFNFVKIDMLGPHVNGRELVDVIGVVQSVSP 365
            + N++E+ L   S VD   +E + +P  +F+F  I+ +    N   ++D+IGVV SV+P
Sbjct: 307 HLNNEWEILLENGSTVDLCPDENSSIPTQRFDFRPINEIEDAQN-NAILDIIGVVTSVNP 366

Query: 366 TMSIRRKINNETAPKRDVTIADETKKTVVVSLWNDLATTVGQELLDIVDQS--PIIALKY 425
             +I+RK   ET  KR + + D + ++V V++W D     G +L  +V++   P++A+K 
Sbjct: 367 CTTIQRKNGMET-QKRTMNLKDMSGRSVEVTMWGDFCNREGSQLQGMVERGIFPVLAVKA 426

Query: 426 LRVGDFQGVSLSTISRSSILINPDIKEAHQLRSWYDSEGKAISMASVSSGMSPSSKSGSR 485
            +V DF G S+ TIS + + INPD  EAH LR W+DS G+  S  S+S  ++P +   SR
Sbjct: 427 GKVSDFSGKSVGTISSTQLFINPDSAEAHSLRQWFDSGGRDASTQSISRDITPGA---SR 486

Query: 486 SMYTDRVSLSHILQNKSLG-EEKPMFFSIRAYVSFIKPDQTMWYRAC------KTCNKKV 545
           +     V+    ++++ LG  +KP + +++A V F K +++ +Y AC      + CNKKV
Sbjct: 487 NEIRKTVAQ---IKDEGLGMGDKPDWITVKATVIFFK-NESFFYTACPNMIGDRQCNKKV 546

Query: 546 TDAIGSGYWCESCQKNDEECSLRYIMVVRVSDASCEAWLSTFNAEAERIVGCTAEELDGL 605
           T +    + C+ C +  EEC  RY++  ++ D S  AW++ F    + ++GC+A EL+ L
Sbjct: 547 TKSTNGNWTCDKCDREFEECDYRYLLQFQIQDHSGTAWVTAFQEAGQELLGCSATELNAL 606

Query: 606 KSQIGEEASYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRSVAPVDFAAESRFLLE 623
           K +  E+  +   +    +  +L R+ V +  Y +E++ + T   V  VD + ES+FLL+
Sbjct: 607 KER--EDPRFADTMLNCLFQEYLLRLKVKEESYGDERKVKNTAVKVEKVDPSGESKFLLD 654

[Close]

BLAST of CmaCh11G002090 vs. TAIR 10
Match: AT5G08020.1 (RPA70-kDa subunit B )

HSP 1 Score: 852.4 bits (2201), Expect = 2.2e-247
Identity = 423/624 (67.79%), Postives = 518/624 (83.01%), Query Frame = 0


Query: 1   MANAPTPGGISKILANPSPDSASDVPQVVLQVLDLKATGNRYMFTAADGDMKLKSILPSN 60
           M N+ T  GI+ +LAN S DS+S  P++V+QV+DLK  GNRY F+A DG MK+K++LP+ 
Sbjct: 1   MENSVTQDGIATVLANQSLDSSSVRPEIVVQVVDLKPAGNRYTFSANDGKMKIKAMLPAT 60

Query: 61  LTSEVISGNIQNLGLIRVLDYSLNDIPNK-PEKYLIVTKCEVVSSALDKEVKSEVKKEEA 120
           LTS++ISG IQNLGLIR+L+Y++NDIP K  EKY+++TKCE V+SALD E+K+E+K    
Sbjct: 61  LTSDIISGKIQNLGLIRLLEYTVNDIPGKSEEKYMLITKCEAVASALDSEIKAEIK---- 120

Query: 121 DIVLKPKQELDDKSAVNTGSGILLKPKQELVAKSAAQIVHEQRTNMAPSARMSMTRRVHP 180
                              +GI+LKPK E VAKSA+QI++EQR N AP+ARM+MTRRVHP
Sbjct: 121 -----------------ASTGIMLKPKHEFVAKSASQIINEQRGNAAPAARMAMTRRVHP 180

Query: 181 LVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLADEDGTQIQATMFNEAARKF 240
           LV LNPYQG WTIKVRVT+KG +RTYKNA+GEGCVFNV L DE+GTQIQATMFN AARKF
Sbjct: 181 LVSLNPYQGSWTIKVRVTNKGVMRTYKNARGEGCVFNVELTDEEGTQIQATMFNAAARKF 240

Query: 241 YEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVTNEAAFVPETKFNFVK 300
           Y++F +GKVYY+SRG+LK+ANK+FKTVQNDYEMTLN NS+V+E +NE  F PETKFNFV 
Sbjct: 241 YDRFEMGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASNEEMFTPETKFNFVP 300

Query: 301 IDMLGPHVNGRELVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVVSLWND 360
           ID LG +VN ++L+DVIGVVQSVSPTMSIRRK +NE  PKRD+T+ADETKKTVVVSLWND
Sbjct: 301 IDELGTYVNQKDLIDVIGVVQSVSPTMSIRRKNDNEMIPKRDITLADETKKTVVVSLWND 360

Query: 361 LATTVGQELLDIVDQSPIIALKYLRVGDFQGVSLSTISRSSILINPDIKEAHQLRSWYDS 420
           LAT +GQELLD+ D  P+IA+K L+VG FQGVSLSTISRS+++INP+  EA +L+SWYD+
Sbjct: 361 LATGIGQELLDMADNHPVIAIKSLKVGAFQGVSLSTISRSNVVINPNSPEATKLKSWYDA 420

Query: 421 EGKAISMASVSSGMSPSSKSGSRSMYTDRVSLSHILQNKSLGEEKPMFFSIRAYVSFIKP 480
           EGK  SM+++ SGMS S+ +GSRSMY+DRV LSHI  N SLGEEKP+FFS RAY+SFIKP
Sbjct: 421 EGKETSMSAIGSGMSSSANNGSRSMYSDRVFLSHITSNPSLGEEKPVFFSTRAYISFIKP 480

Query: 481 DQTMWYRACKTCNKKVTDAIGSGYWCESCQKNDEECSLRYIMVVRVSDASCEAWLSTFNA 540
           DQTMWYRACKTCNKKVT+A+ SGYWCESCQK D+ECSLRYIM V+VSD++ E WLS FN 
Sbjct: 481 DQTMWYRACKTCNKKVTEAMDSGYWCESCQKKDQECSLRYIMAVKVSDSTGETWLSAFND 540

Query: 541 EAERIVGCTAEELDGLKSQIGEEASYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVR 600
           EAE+I+GCTA++L+ LKS+ GE   +Q KLKEATW  HLFR+SVSQ EYN+EKRQRITVR
Sbjct: 541 EAEKIIGCTADDLNDLKSEEGEVNEFQTKLKEATWSSHLFRISVSQQEYNSEKRQRITVR 600

Query: 601 SVAPVDFAAESRFLLEEIAKMKAS 624
            V+P+DFAAE+R LL++I+K K S
Sbjct: 601 GVSPIDFAAETRLLLQDISKNKTS 603

[Close]

BLAST of CmaCh11G002090 vs. TAIR 10
Match: AT5G61000.1 (Replication factor-A protein 1-related )

HSP 1 Score: 836.6 bits (2160), Expect = 1.3e-242
Identity = 417/622 (67.04%), Postives = 520/622 (83.60%), Query Frame = 0


Query: 1   MANAPTPGGISKILANPSPDSASDVPQVVLQVLDLKATGNRYMFTAADGDMKLKSILPSN 60
           M  + TP  IS +L+NPS DS+SD  ++V+QV+DLK  GNRY F+A DG  K+K++  ++
Sbjct: 1   MQTSVTPDAISTVLSNPSFDSSSDRSEIVVQVVDLKPIGNRYTFSANDGKTKVKAMFTAS 60

Query: 61  LTSEVISGNIQNLGLIRVLDYSLNDIPNKPEKYLIVTKCEVVSSALDKEVKSEVK--KEE 120
           LT E+ISG IQNLGLIR++D+++NDI +K  KY +VTKCE V S LD E+  + K  +EE
Sbjct: 61  LTPEIISGKIQNLGLIRLIDFTVNDISSKSTKYFLVTKCEAVGSVLDSEINLDSKSGEEE 120

Query: 121 ADIVLKPKQELDDKSAVN--TGSGILLKPKQELVAKSAAQIVHEQRTNMAPSARMSMTRR 180
           A    K K E    S +N    +GI LKPKQE VAKSA+QI+ EQR N AP+ARM+MTRR
Sbjct: 121 AREPKKQKLEHSPVSPLNDVVSTGITLKPKQEFVAKSASQIMSEQRGNAAPAARMAMTRR 180

Query: 181 VHPLVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLADEDGTQIQATMFNEAA 240
           VHPLV LNPYQG+WTIKVRVT+KG +R YKNA+GEGCVFNV L DE+GTQIQATMFN+AA
Sbjct: 181 VHPLVSLNPYQGNWTIKVRVTNKGVMRNYKNARGEGCVFNVELTDEEGTQIQATMFNDAA 240

Query: 241 RKFYEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVTNEAAFVPETKFN 300
           RKF+++F LGKVYY+SRG+LK+ANK+FKTVQNDYEMTLN NS+V+E ++E  F+PETKFN
Sbjct: 241 RKFFDRFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASSEEMFIPETKFN 300

Query: 301 FVKIDMLGPHVNGRELVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVVSL 360
           FV I+ LG +VN +EL+D+IGVVQSVSPTMSIRR+ +NE  PKRD+T+ADE++KTVVVSL
Sbjct: 301 FVPIEELGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDITLADESRKTVVVSL 360

Query: 361 WNDLATTVGQELLDIVDQSPIIALKYLRVGDFQGVSLSTISRSSILINPDIKEAHQLRSW 420
           WNDLAT +GQELLD+ DQSP+IA+K L+VGDFQGVSLSTISRS+++INP+  EA +L+SW
Sbjct: 361 WNDLATGIGQELLDMADQSPVIAIKSLKVGDFQGVSLSTISRSNVVINPESPEAKKLKSW 420

Query: 421 YDSEGKAISMASVSSGMSPSSKSGSRSMYTDRVSLSHILQNKSLGEEKPMFFSIRAYVSF 480
           +DSEGK ISM+S+ SGMSPS+K+GSRS+YTDRV LSHI  N SL EEKP+FFS RAY+SF
Sbjct: 421 FDSEGKEISMSSIGSGMSPSAKNGSRSLYTDRVLLSHITSNPSLFEEKPVFFSTRAYISF 480

Query: 481 IKPDQTMWYRACKTCNKKVTDAIGSGYWCESCQKNDEECSLRYIMVVRVSDASCEAWLST 540
           IKPDQTMWY+ACKTCNKKVT+A+ SGYWCE CQ+  EECSLRYIM V+V+D+S E W+S+
Sbjct: 481 IKPDQTMWYQACKTCNKKVTEALDSGYWCEGCQRKYEECSLRYIMAVKVTDSSGETWISS 540

Query: 541 FNAEAERIVGCTAEELDGLKSQIGEEASYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRI 600
           FN EAE+I+GC+A+EL+ LKS+ GE   YQ KLKEATW  H+FRVSV+QNEYN EKRQR+
Sbjct: 541 FNDEAEKILGCSADELNKLKSEEGEVNEYQTKLKEATWSSHVFRVSVTQNEYNGEKRQRV 600

Query: 601 TVRSVAPVDFAAESRFLLEEIA 619
           TV+ VAP+DFAAE+R LL++I+
Sbjct: 601 TVKGVAPLDFAAETRLLLQDIS 622

[Close]

BLAST of CmaCh11G002090 vs. TAIR 10
Match: AT2G06510.1 (replication protein A 1A )

HSP 1 Score: 301.2 bits (770), Expect = 1.9e-81
Identity = 192/627 (30.62%), Postives = 333/627 (53.11%), Query Frame = 0


Query: 29  VLQVLDLKATG-------NRYMFTAADGDMKLKSILPSNLTSEVISGNIQNLGLIRVLDY 88
           +LQVL++K  G        RY F  +DG     +++   L   V SG  +   +++++DY
Sbjct: 23  LLQVLEIKMIGRSQERSQERYRFLISDGVSAQHAMVAVQLNDRVKSGQFEKGSIVQLIDY 82

Query: 89  SLNDIPNKPEKYLIVTKCEVV--------SSALDKEVKSEVKKEEAD----------IVL 148
             +D+  K  K ++V   E +        +  +  E  +E +K  +           +  
Sbjct: 83  ICSDV--KGRKLIVVLNMETIVQQSETIGNPTIFGETDTEAQKTFSGTGNIPPPNRVVFN 142

Query: 149 KPKQELDDKSAVNTGSGILLKPKQELVAKSAAQIVHE---QRTNMAPSARMSMTRRVHPL 208
           +P  +     A   G  I  +       + + Q  ++      N  P  +     RV P+
Sbjct: 143 EPMVQHSVNRAPPRGVNIQNQANNTPSFRPSVQPSYQPPASYRNHGPIMKNEAPARVIPI 202

Query: 209 VYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLADEDGTQIQATMFNEAARKFY 268
             LNPYQG W IK RVT KG++R Y NA+G+G VF+  L D DG +I+ T FN    +FY
Sbjct: 203 AALNPYQGRWAIKARVTAKGDIRRYNNAKGDGKVFSFDLLDYDGGEIRVTCFNALVDRFY 262

Query: 269 EKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVTNEAAFVPETKFNFVKI 328
           +   +GKVY +S+G+LK A K F  ++N++E+ L   S V+   +E   +P+ +F+F  I
Sbjct: 263 DVTEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDGSIPKQQFSFRPI 322

Query: 329 DMLGPHVNGRELVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVVSLWNDL 388
             +  +     ++DVIGVV SV+P++ I RK   ET  +R + + DE+ K V V+LW + 
Sbjct: 323 SDI-ENAENNTILDVIGVVTSVNPSVPILRKNGMET-HRRILNLKDESGKAVEVTLWGEF 382

Query: 389 ATTVGQELLDIVDQS--PIIALKYLRVGDFQGVSLSTISRSSILINPDIKEAHQLRSWYD 448
               G++L ++VD +  P++A+K  +V DF G S+ TIS + + INPD  EAH+LR+W+D
Sbjct: 383 CNRDGRQLEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISSTQLFINPDFPEAHKLRTWFD 442

Query: 449 SEGKAISMASVSSGMSPSSKSGSRSMYTDRVSLSHILQNKSLGEEKPMFFSIRAYVSFIK 508
             GK  +  S+S    P    G  S    R ++S I +      +KP + +++A +SFIK
Sbjct: 443 YGGKDTASFSISRDTMP----GGVSRNEIRKNVSQIKEEGLGRSDKPDWITVKATISFIK 502

Query: 509 PDQTMWYRAC------KTCNKKVTDAIGSGYWCESCQKNDEECSLRYIMVVRVSDASCEA 568
            D +  Y AC      K CNKKVT +  + + C+ C +  +EC  RY++ V++ D +   
Sbjct: 503 TD-SFCYTACPLMIGDKQCNKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLT 562

Query: 569 WLSTFNAEAERIVGCTAEELDGLKSQIGEEASYQLKLKEATWVPHLFRVSVSQNEYNNEK 620
           W++ F    E I+GC A++L  +K ++ +E  +   +++  +  ++ ++ + +  Y +E+
Sbjct: 563 WITAFQETGEEIMGCPAKKLYAMKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQ 622

[Close]

BLAST of CmaCh11G002090 vs. TAIR 10
Match: AT2G06510.2 (replication protein A 1A )

HSP 1 Score: 297.7 bits (761), Expect = 2.1e-80
Identity = 190/626 (30.35%), Postives = 331/626 (52.88%), Query Frame = 0


Query: 30  LQVLDLKATG-------NRYMFTAADGDMKLKSILPSNLTSEVISGNIQNLGLIRVLDYS 89
           + VL++K  G        RY F  +DG     +++   L   V SG  +   +++++DY 
Sbjct: 1   MPVLEIKMIGRSQERSQERYRFLISDGVSAQHAMVAVQLNDRVKSGQFEKGSIVQLIDYI 60

Query: 90  LNDIPNKPEKYLIVTKCEVV--------SSALDKEVKSEVKKEEAD----------IVLK 149
            +D+  K  K ++V   E +        +  +  E  +E +K  +           +  +
Sbjct: 61  CSDV--KGRKLIVVLNMETIVQQSETIGNPTIFGETDTEAQKTFSGTGNIPPPNRVVFNE 120

Query: 150 PKQELDDKSAVNTGSGILLKPKQELVAKSAAQIVHE---QRTNMAPSARMSMTRRVHPLV 209
           P  +     A   G  I  +       + + Q  ++      N  P  +     RV P+ 
Sbjct: 121 PMVQHSVNRAPPRGVNIQNQANNTPSFRPSVQPSYQPPASYRNHGPIMKNEAPARVIPIA 180

Query: 210 YLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLADEDGTQIQATMFNEAARKFYE 269
            LNPYQG W IK RVT KG++R Y NA+G+G VF+  L D DG +I+ T FN    +FY+
Sbjct: 181 ALNPYQGRWAIKARVTAKGDIRRYNNAKGDGKVFSFDLLDYDGGEIRVTCFNALVDRFYD 240

Query: 270 KFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVTNEAAFVPETKFNFVKID 329
              +GKVY +S+G+LK A K F  ++N++E+ L   S V+   +E   +P+ +F+F  I 
Sbjct: 241 VTEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDGSIPKQQFSFRPIS 300

Query: 330 MLGPHVNGRELVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVVSLWNDLA 389
            +  +     ++DVIGVV SV+P++ I RK   ET  +R + + DE+ K V V+LW +  
Sbjct: 301 DI-ENAENNTILDVIGVVTSVNPSVPILRKNGMET-HRRILNLKDESGKAVEVTLWGEFC 360

Query: 390 TTVGQELLDIVDQS--PIIALKYLRVGDFQGVSLSTISRSSILINPDIKEAHQLRSWYDS 449
              G++L ++VD +  P++A+K  +V DF G S+ TIS + + INPD  EAH+LR+W+D 
Sbjct: 361 NRDGRQLEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISSTQLFINPDFPEAHKLRTWFDY 420

Query: 450 EGKAISMASVSSGMSPSSKSGSRSMYTDRVSLSHILQNKSLGEEKPMFFSIRAYVSFIKP 509
            GK  +  S+S    P    G  S    R ++S I +      +KP + +++A +SFIK 
Sbjct: 421 GGKDTASFSISRDTMP----GGVSRNEIRKNVSQIKEEGLGRSDKPDWITVKATISFIKT 480

Query: 510 DQTMWYRAC------KTCNKKVTDAIGSGYWCESCQKNDEECSLRYIMVVRVSDASCEAW 569
           D +  Y AC      K CNKKVT +  + + C+ C +  +EC  RY++ V++ D +   W
Sbjct: 481 D-SFCYTACPLMIGDKQCNKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTW 540

Query: 570 LSTFNAEAERIVGCTAEELDGLKSQIGEEASYQLKLKEATWVPHLFRVSVSQNEYNNEKR 620
           ++ F    E I+GC A++L  +K ++ +E  +   +++  +  ++ ++ + +  Y +E+R
Sbjct: 541 ITAFQETGEEIMGCPAKKLYAMKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQR 600

[Close]

BLAST of CmaCh11G002090 vs. TAIR 10
Match: AT5G45400.1 (Replication factor-A protein 1-related )

HSP 1 Score: 284.6 bits (727), Expect = 1.9e-76
Identity = 162/467 (34.69%), Postives = 263/467 (56.32%), Query Frame = 0


Query: 164 NMAPSARMSMTRRVHPLVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLADED 223
           N  P AR     R++P+  LNPYQG WTIKVRVT K +LR + N +GEG +F+  L D D
Sbjct: 286 NRGPVARNEAPPRINPIAALNPYQGRWTIKVRVTSKADLRRFNNPRGEGKLFSFDLLDAD 345

Query: 224 GTQIQATMFNEAARKFYEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEV 283
           G +I+ T FN+A  +F++K  +G VY +SRG LK A K F  + NDYE+ L+  S +   
Sbjct: 346 GGEIRVTCFNDAVDQFFDKIVVGNVYLISRGNLKPAQKNFNHLPNDYEIHLDSASTIQPC 405

Query: 284 TNEAAFVPETKFNFVKIDMLGPHVNGRELVDVIGVVQSVSPTMSIRRKINNETAPKRDVT 343
            ++   +P   F+F  I  +  ++      DVIG+V S+SPT++I RK N     KR + 
Sbjct: 406 EDDGT-IPRYHFHFRNIGDI-ENMENNSTTDVIGIVSSISPTVAIMRK-NLTEVQKRSLQ 465

Query: 344 IADETKKTVVVSLWNDLATTVGQELLDIVDQS--PIIALKYLRVGDFQGVSLSTISRSSI 403
           + D + ++V V++W +     GQ+L ++ D    P++ALK  R+G+F G  +STI  S  
Sbjct: 466 LKDMSGRSVEVTMWGNFCNAEGQKLQNLCDSGVFPVLALKAGRIGEFNGKQVSTIGASQF 525

Query: 404 LINPDIKEAHQLRSWYDSEGKAISMASVSSGMSPSSKSGSRSMYTDRVSLSHILQNKSLG 463
            I PD  EA +LR WY+ EG+     S+S   S   +   R +      ++ I   K   
Sbjct: 526 FIEPDFPEARELRQWYEREGRNAHFTSISREFSGVGRQEVRKV------IAQIKDEKLGT 585

Query: 464 EEKPMFFSIRAYVSFIKPDQTMWYRAC------KTCNKKVTDAIGSGYW-CESCQKNDEE 523
            EKP + ++ A +SF+K  +   Y AC      + C+KKVT+  G G W CE C K  +E
Sbjct: 586 SEKPDWITVCATISFMKV-ENFCYTACPIMNGDRPCSKKVTNN-GDGTWRCEKCDKCVDE 645

Query: 524 CSLRYIMVVRVSDASCEAWLSTFNAEAERIVGCTAEELDGLKSQIGEEASYQLKLKEATW 583
           C  RYI+ +++ D +   W + F    E I+G +A++L  +K +  +E  ++  ++   +
Sbjct: 646 CDYRYILQIQLQDHTDLTWATAFQEAGEEIMGMSAKDLYYVKYENQDEEKFEDIIRSVAF 705

Query: 584 VPHLFRVSVSQNEYNNEKRQRITVRSVAPVDFAAESRFLLEEIAKMK 622
             ++F++ + +  Y++E+R + TV     +++++ +RF+LE I K+K
Sbjct: 706 TKYIFKLKIKEETYSDEQRVKATVVKAEKLNYSSNTRFMLEAIDKLK 741

The following BLAST results are available for this feature:

BLAST of CmaCh11G002090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SD82	3.1e-246	67.79	Replication protein A 70 kDa DNA-binding subunit B OS=Arabidopsis thaliana OX=37...	[more]
Q9FME0	1.8e-241	67.04	Replication protein A 70 kDa DNA-binding subunit D OS=Arabidopsis thaliana OX=37...	[more]
Q10Q08	8.6e-236	66.45	Replication protein A 70 kDa DNA-binding subunit B OS=Oryza sativa subsp. japoni...	[more]
Q9SKI4	2.7e-80	30.62	Replication protein A 70 kDa DNA-binding subunit A OS=Arabidopsis thaliana OX=37...	[more]
Q6YZ49	7.3e-78	29.84	Replication protein A 70 kDa DNA-binding subunit A OS=Oryza sativa subsp. japoni...	[more]

BLAST of CmaCh11G002090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08020.1	2.2e-247	67.79	RPA70-kDa subunit B	[more]
AT5G61000.1	1.3e-242	67.04	Replication factor-A protein 1-related	[more]
AT2G06510.1	1.9e-81	30.62	replication protein A 1A	[more]
AT2G06510.2	2.1e-80	30.35	replication protein A 1A	[more]
AT5G45400.1	1.9e-76	34.69	Replication factor-A protein 1-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007199	Replication factor-A protein 1, N-terminal	PFAM	PF04057	Rep-A_N	coord: 6..103 e-value: 6.7E-21 score: 74.2
None	No IPR available	GENE3D	2.40.50.140		coord: 431..620 e-value: 1.3E-49 score: 170.0
None	No IPR available	GENE3D	2.40.50.140		coord: 6..112 e-value: 1.2E-12 score: 49.8
None	No IPR available	GENE3D	2.40.50.140		coord: 174..282 e-value: 1.6E-34 score: 120.3
None	No IPR available	GENE3D	2.40.50.140		coord: 290..430 e-value: 4.9E-40 score: 138.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR23273	REPLICATION FACTOR A 1, RFA1	coord: 5..618
None	No IPR available	PANTHER	PTHR23273:SF32	REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED	coord: 5..618
None	No IPR available	CDD	cd04474	RPA1_DBD_A	coord: 179..282 e-value: 9.38575E-44 score: 150.089
None	No IPR available	CDD	cd04475	RPA1_DBD_B	coord: 312..418 e-value: 2.36331E-37 score: 132.323
IPR031657	Replication protein A, OB domain	PFAM	PF16900	REPA_OB_2	coord: 308..404 e-value: 6.0E-22 score: 77.4
IPR004591	Replication factor A protein 1	TIGRFAM	TIGR00617	TIGR00617	coord: 6..619 e-value: 7.0E-193 score: 640.4
IPR013955	Replication factor A, C-terminal	PFAM	PF08646	Rep_fac-A_C	coord: 467..613 e-value: 1.6E-42 score: 144.7
IPR013955	Replication factor A, C-terminal	CDD	cd04476	RPA1_DBD_C	coord: 455..619 e-value: 1.76305E-51 score: 173.263
IPR004365	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	PFAM	PF01336	tRNA_anti-codon	coord: 190..274 e-value: 4.3E-10 score: 39.4
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 3..107
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 445..620
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 295..424
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 178..286

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G002090.1	CmaCh11G002090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006268	DNA unwinding involved in DNA replication
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0051321	meiotic cell cycle
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0007004	telomere maintenance via telomerase
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005662	DNA replication factor A complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0043047	single-stranded telomeric DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003676	nucleic acid binding