CmaCh11G001960 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G001960
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein Asterix-like
Location	Cma_Chr11: 1003007 .. 1006521 (-)
RNA-Seq Expression	CmaCh11G001960
Synteny	CmaCh11G001960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATCGACACTTGAGAGCGAGTCTAGAGATGTCGACACAAGCGAACGATCCACGGCAGCCGTCGGCGGCGAAGCCGTTTGTTTCTCCGGCTGTGAACCCGCAAGATCTTCCCGTCGATTATTCCGGTTTCATCGCCGTAGTTTTTGGCATCGCTGGCGTCATGTTCAGGGTATGCCTGTTTCTTTCCGAGCACTGATACGATAACTATGGGGATCTCACATTTTACTGATGCGATATTCTTGTTTTTCGTTAAAATTGAGCAGTACAAGCTTAGCTCTTGGCTAGCCATCATATTCTGCGCTCAATCGCTTGCTAATATGAGGAACATGGAGAACGATCTCAAGCAGATTTCCATGGCTATGATGTGAGTTTTCTTCCCCTTCCAATCTCTATTTCTTTATTCGTTCATTCGAAGGTTTCTGATGAGTTTTGTGGCATGCACGCGATTTGTTTGATTGTTAATTATTATGCTTATTTCCTGAAAATTTGATTTTGCTGGAACGGAGATGAAATACACTTGGGATCGGAATTGTATCAGTTTAATGGCATTAATTGGTAATTTTGGGTTTGTCCAAAATCTGAACAATCGAAGTTCCGTTTTTTAGGCTGACTTTGACGTTGTCATGTAGATGCAACAGTCGATGTTTTTTAGCTAGGGAATGGAGCTAATTTAATTCTTCAGGGTTCAATCATGCTTGATTGCAAATTAAACTGCCTACTGCGTTGGGGTTTATGATCCTTTCGATAACCTTTACATGTTTATACCATTGATTCGTGTACACATTTCAATCATTTTATCAACGTATAAGTTACTAAAATGATTTTGAAAAAAGTGTCCGCAAACGCAAATGACTATGGAGATATAATCATTAAGAAAATACCTTACGAAAAGACCAAATATACTCTGCATCATATACAAACCAACATCTTCCATCTTTTGCGAAGGGGCCATGGAAGTACATAAAAAAACACCAAAACCTCATCACCAACCAAATTCGCCATAGGATGGAGGATGGAGGAAGCACATCTTTTTGATCGGCCCTTGGATTGGAAACGCTAGGCTAGCCTTGCGGTATCTAATTCTAGCAAAACGGCTTCGATCAAAGAAACATGGAATAATGCCAGCAATTTCTGGGATCCGAAACTTGGTAGGAACCCAAAGAATAACAAAACTACAAAAATGGGTTGAATTAAGCTTTGCCCTCGCCCCAATTATGTTGCTTAAAAAACCAGACTCATTAACATGGCTTCCTAGCACTGACGGAGTCTTCTCCACAAATTTTTTTTTATCATAGACATGGTAAGGAAATCAGCCTAAAAAGATGGAAGCTTTTCCTCTAGTGAAATAGCATATAAAGCCGAAAATCTACAAAAAAATAGTGTCCTACATGACTCTATTTCCACAATTTTTGTTTTTTTAACATAGAGATAGGGATAAGTAAAAGTCATAAACCACATGCTAGCAAAAACAATATGGAAAGGAAATCCCTAAAAAGATGAAGTTTTACACAATGCATATATGCTCAAAATTTATGGAAAAAGATTCTCAATATCTTCGGGAGGCCTCACTTTTCCCAAGTAGGTAAAAGATTTATTGGACATGGCCATAACGTACTACCTCTTTAAGAAAGCAAAAGTCCCCATATGGAAAATTTTCATTATGGCTTTCTTTTGACCATGTGGAAAGAAAGAAATCAAAGAGTATTTGGAGGTAAGACAGACTTATACAAACTCTTCGATAACATTGTTTACCACGTTATATCTTGGTGTAAATTGTCTAATACATTTACTTCATGTGGTCATACCTCTCTCATTGTAAATTGGGATAACACCTTTGGTAAATTTCAATTATGAATGAAATTGTTTCTTAAAAAAAAAAAAAATTAGACTAGGTTAAATGTTATTACCATTATTCAGGTACTTGATTAATTAGCTAATCTATAAGTTTTTAGATACCAAATATTGCAAGGTTGGCCTTGTTATACGAATCCATGAATATCTAAGTTGGCATGATCCCAGTCATAAGAAAAAAGAGTAAGGATAGAATAGATAAGATCAACAATCTCTTACACTTGGAATCTTGTTTTAGGACTTACAGATTCGGAATTGATTGCGGTGCTCAACGGTTTGAGATTTAGGAACTTGATGTTGGTCTTTTATATGCATAATGAACATTCCCCCTTGACAGAGTGGTTCTTACCCTTTCCTTTATCTACGACTTTGGAGTCTTGTAAATTATAATTAATCATCATAAACAATCACTTTCCTCACTAATAGGAACCAGAGAATTTAAATAAAAGTTTGATTAAGAACTTACAAAATAATAAAATACTCTAATTTATCCCAAAGTTATTTGAGGAACTCGAACACATTCTCTCTCAAGTGAACTCAAGCTTAAACGACTAAATAAATGTTGCTTTCACCCCCTTCCGACTGACTCTATTGTTAACTACCTCTCACTAGCAAACTCTTTAGCTAATGATACCAATAATTCTAACTTCTACCCTATTAGTATTCTTGAGGCTATTTGAAACAAAAATATTGCGAAGATTTTAGTTATGCGTGAATAATGAGAGTTCCATCCATTGATTATTCTTCCTTGTTGGTTCAAAATGCTTCTCCTTCGACCTGAATTGGGGTGAGTTGTGGACCCTTAAGTTTGTCTGTTTGATGATTGGTTAAGACAAATGAGAGAGGGTAGCATGATTGTTTACAATGTTAATAACAGTTTCAGGACAAACGGGGCTGAATACAAACCTATGGAGGGTAGGTGGTTTTCAAAACTTTCGTATAAAGTTTATTATATGAAGGTGTTCGTGCCCTGTATTTTTGCCTATATTTATGTAATTTATGTAAAACTTAGTCTAGGCAGGCCAAGTGTCTAATCAAGTTATGTCTAGGCATATTAGATCGTCTTGAGTTGTCTGTCTTGTTTTAATGATTTTTCTTTAGCGTTATCAACAATTTAACATGATTCAATGGAATCGGCTTTATATGTTTGTGACTTCAACTCTTCTTTGGTTTCAAATCCAGGTTTGCCATCATGGGATTGGTAACGAATTACTTGGGTCCTGCACGACCAGGAACAAAGAGTTAAGACTCCTCGCTCAGAATGGTTCTGATGTATTTCTTTTTTTCTTCTCCTCGGCTTAATCTAAGTTAGGATCTTTTTATGGTTGGTGACTCCCTTTTCTATTATGTTTTTAAAGAAGAATATTGGGTGACACAATGAAGGGATGAGTTTGTGGCCAACAATATGCCAGAGGAAAGTGACTAGATTACTCTTCCCATCCAGTAGTAGATACCTAGTGTGGAGCTGAGTGAGACGCTACAATAAATAGAATTTTCTTCAGCATCCATATTTACTTGAATCTCAAACCTCTTTCTGAAAATTAGTTTTCCAAATGGCCACAGGGTGGTTTAAAGATCCAATGATTCGGAAAATTGTGTTGGTGGCCAACTTGCCTATAACTCAACTAGCTAGTACATTTATCATGAACTTGAAGTAGGTGGAGT

mRNA sequence

TATCGACACTTGAGAGCGAGTCTAGAGATGTCGACACAAGCGAACGATCCACGGCAGCCGTCGGCGGCGAAGCCGTTTGTTTCTCCGGCTGTGAACCCGCAAGATCTTCCCGTCGATTATTCCGGTTTCATCGCCGTAGTTTTTGGCATCGCTGGCGTCATGTTCAGGTACAAGCTTAGCTCTTGGCTAGCCATCATATTCTGCGCTCAATCGCTTGCTAATATGAGGAACATGGAGAACGATCTCAAGCAGATTTCCATGGCTATGATGTTTGCCATCATGGGATTGGTAACGAATTACTTGGGTCCTGCACGACCAGGAACAAAGAGTTAAGACTCCTCGCTCAGAATGGTTCTGATGTATTTCTTTTTTTCTTCTCCTCGGCTTAATCTAAGTTAGGATCTTTTTATGGTTGGTGACTCCCTTTTCTATTATGTTTTTAAAGAAGAATATTGGGTGACACAATGAAGGGATGAGTTTGTGGCCAACAATATGCCAGAGGAAAGTGACTAGATTACTCTTCCCATCCAGTAGTAGATACCTAGTGTGGAGCTGAGTGAGACGCTACAATAAATAGAATTTTCTTCAGCATCCATATTTACTTGAATCTCAAACCTCTTTCTGAAAATTAGTTTTCCAAATGGCCACAGGGTGGTTTAAAGATCCAATGATTCGGAAAATTGTGTTGGTGGCCAACTTGCCTATAACTCAACTAGCTAGTACATTTATCATGAACTTGAAGTAGGTGGAGT

Coding sequence (CDS)

ATGTCGACACAAGCGAACGATCCACGGCAGCCGTCGGCGGCGAAGCCGTTTGTTTCTCCGGCTGTGAACCCGCAAGATCTTCCCGTCGATTATTCCGGTTTCATCGCCGTAGTTTTTGGCATCGCTGGCGTCATGTTCAGGTACAAGCTTAGCTCTTGGCTAGCCATCATATTCTGCGCTCAATCGCTTGCTAATATGAGGAACATGGAGAACGATCTCAAGCAGATTTCCATGGCTATGATGTTTGCCATCATGGGATTGGTAACGAATTACTTGGGTCCTGCACGACCAGGAACAAAGAGTTAA

Protein sequence

MSTQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCAQSLANMRNMENDLKQISMAMMFAIMGLVTNYLGPARPGTKS

Homology

[Close]

BLAST of CmaCh11G001960 vs. ExPASy Swiss-Prot
Match: Q9SD88 (Protein Asterix OS=Arabidopsis thaliana OX=3702 GN=At5g07960 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.9e-40
Identity = 79/99 (79.80%), Postives = 89/99 (89.90%), Query Frame = 0


Query: 2   STQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCAQ 61
           ++  NDPRQPSAAKP++   V P+DLPVDYSGFIAV+ G++GVMFRYK+ SWLAIIFCAQ
Sbjct: 8   ASSVNDPRQPSAAKPYIPRPVAPEDLPVDYSGFIAVILGVSGVMFRYKICSWLAIIFCAQ 67

Query: 62  SLANMRNMENDLKQISMAMMFAIMGLVTNYLGPARPGTK 101
           SLANMRN+ENDLKQISMAMMFAIMGLVTNYLGP RP TK
Sbjct: 68  SLANMRNLENDLKQISMAMMFAIMGLVTNYLGPNRPATK 106

[Close]

BLAST of CmaCh11G001960 vs. ExPASy Swiss-Prot
Match: Q09993 (Protein Asterix OS=Caenorhabditis elegans OX=6239 GN=K10B2.4 PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.9e-04
Identity = 33/101 (32.67%), Postives = 49/101 (48.51%), Query Frame = 0


Query: 4   QANDPRQPSAA---KPFVSPAVNPQDLPVD----YSGFIAVVFGIAGVMFRYKLSSWLAI 63
           Q  DPR+ +     KP  S A   Q +  D    Y   + ++F + G+M R K  SWLA+
Sbjct: 3   QNGDPRRTNRIVRYKPLDSTANQQQAISEDPLPEYMNVLGMIFSMCGLMIRMKWCSWLAL 62

Query: 64  IFCAQSLANMRNMENDLKQISMAMMFAIMGLVTNYLGPARP 98
           +    S AN R   +D KQI  + M ++  +V +YL    P
Sbjct: 63  VCSCISFANTRT-SDDAKQIVSSFMLSVSAVVMSYLQNPSP 102

[Close]

BLAST of CmaCh11G001960 vs. TAIR 10
Match: AT5G07960.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0139 (InterPro:IPR005351); Has 193 Blast hits to 193 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). )

HSP 1 Score: 164.9 bits (416), Expect = 3.5e-41
Identity = 79/99 (79.80%), Postives = 89/99 (89.90%), Query Frame = 0


Query: 2   STQANDPRQPSAAKPFVSPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCAQ 61
           ++  NDPRQPSAAKP++   V P+DLPVDYSGFIAV+ G++GVMFRYK+ SWLAIIFCAQ
Sbjct: 8   ASSVNDPRQPSAAKPYIPRPVAPEDLPVDYSGFIAVILGVSGVMFRYKICSWLAIIFCAQ 67

Query: 62  SLANMRNMENDLKQISMAMMFAIMGLVTNYLGPARPGTK 101
           SLANMRN+ENDLKQISMAMMFAIMGLVTNYLGP RP TK
Sbjct: 68  SLANMRNLENDLKQISMAMMFAIMGLVTNYLGPNRPATK 106

The following BLAST results are available for this feature:

BLAST of CmaCh11G001960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SD88	4.9e-40	79.80	Protein Asterix OS=Arabidopsis thaliana OX=3702 GN=At5g07960 PE=3 SV=1	[more]
Q09993	1.9e-04	32.67	Protein Asterix OS=Caenorhabditis elegans OX=6239 GN=K10B2.4 PE=3 SV=1	[more]

BLAST of CmaCh11G001960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07960.1	3.5e-41	79.80	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005351	PAT complex subunit Asterix	PFAM	PF03669	UPF0139	coord: 5..98 e-value: 7.5E-36 score: 121.9
IPR005351	PAT complex subunit Asterix	PANTHER	PTHR13193	CGI-140	coord: 2..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G001960.1	CmaCh11G001960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0045048	protein insertion into ER membrane
cellular_component	GO:0030176	integral component of endoplasmic reticulum membrane
molecular_function	GO:0044183	protein folding chaperone