CmaCh11G001740 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G001740
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Dynein light chain 1, cytoplasmic
Location	Cma_Chr11: 903551 .. 904488 (+)
RNA-Seq Expression	CmaCh11G001740
Synteny	CmaCh11G001740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCCATCAAACTTCACACCAGCGCCTCTTATCACCTCCGCCTAAAATGGATCTCCACCGTAGAACCCAACCCACCACCCCCGCCGCCGCCACCACTGTCTCTCCACACCCAACATCACCAAAACTAGATCCCATAACCCCTTTATCCGACTCAGACAACTTGTCAAAATCACACCCACCTTCTCCAAAAGTCGTTCCTGTTTCTCTTCACTCCAACCCCAAAATGGTCGGCCCCAGAACAGTCCATAAACAAGCCAAAAAACCCAACGAAACCCCTCGCCAGCACTCCACCACTGAGAAATTCAATGATTCTGAAGAGAAATTCGAACGCATGATCAACTGTATCACCACCAAAGAAAGGGAAATGAAACAGCTCCTAGTAGACCACCAACATCTCACTCGCAGGCTCTCTGTTTCTTTGTCTTCTTCACGGAGTGGAAGAAGAAAATCTATCTGTGGCTCACAGATTCAGCTAGCAGAGTTGTTCGCCAACAATGGGGTCAAAGTGGTTTCCGCCGATATGCCGCCATTTATGCAGATCCACGCCGTCGATTGCGCTAGAAAGGCCCACGACAGTATGGAAAAATTCACTTCCAAATCGCTGGCGTTGAGTCTCAAACAGGTAGATAGAAATCGATTAGTTTCTCTCTCTAAACTTCTGTTCTTTGTTTCTCTGAATTGGATCATGGGTTTGTTTGTTAGTTCAAAATGGTGATTTGGGTTGGCTGGTTTTTGCAGGAATTCGATGGGGCATACGGGCCGGCATGGCATTGTATTGTTGGGAAGAGTTTTGGATCATTTGTGACACATTCAGTGGGTGGATTCCTGTATTTTTCCCTGGCTCAAAAGCTTTACATTCTGCTCTTCAAAACCACTGTACTAAGAGCCAATTAGAAATAATACTGAATCACTGACCACGTTTTGTTCCAACAA

mRNA sequence

ATGGCTTCCCATCAAACTTCACACCAGCGCCTCTTATCACCTCCGCCTAAAATGGATCTCCACCGTAGAACCCAACCCACCACCCCCGCCGCCGCCACCACTGTCTCTCCACACCCAACATCACCAAAACTAGATCCCATAACCCCTTTATCCGACTCAGACAACTTGTCAAAATCACACCCACCTTCTCCAAAAGTCGTTCCTGTTTCTCTTCACTCCAACCCCAAAATGGTCGGCCCCAGAACAGTCCATAAACAAGCCAAAAAACCCAACGAAACCCCTCGCCAGCACTCCACCACTGAGAAATTCAATGATTCTGAAGAGAAATTCGAACGCATGATCAACTGTATCACCACCAAAGAAAGGGAAATGAAACAGCTCCTAGTAGACCACCAACATCTCACTCGCAGGCTCTCTGTTTCTTTGTCTTCTTCACGGAGTGGAAGAAGAAAATCTATCTGTGGCTCACAGATTCAGCTAGCAGAGTTGTTCGCCAACAATGGGGTCAAAGTGGTTTCCGCCGATATGCCGCCATTTATGCAGATCCACGCCGTCGATTGCGCTAGAAAGGCCCACGACAGTATGGAAAAATTCACTTCCAAATCGCTGGCGTTGAGTCTCAAACAGGAATTCGATGGGGCATACGGGCCGGCATGGCATTGTATTGTTGGGAAGAGTTTTGGATCATTTGTGACACATTCAGTGGGTGGATTCCTGTATTTTTCCCTGGCTCAAAAGCTTTACATTCTGCTCTTCAAAACCACTGTACTAAGAGCCAATTAGAAATAATACTGAATCACTGACCACGTTTTGTTCCAACAA

Coding sequence (CDS)

ATGGCTTCCCATCAAACTTCACACCAGCGCCTCTTATCACCTCCGCCTAAAATGGATCTCCACCGTAGAACCCAACCCACCACCCCCGCCGCCGCCACCACTGTCTCTCCACACCCAACATCACCAAAACTAGATCCCATAACCCCTTTATCCGACTCAGACAACTTGTCAAAATCACACCCACCTTCTCCAAAAGTCGTTCCTGTTTCTCTTCACTCCAACCCCAAAATGGTCGGCCCCAGAACAGTCCATAAACAAGCCAAAAAACCCAACGAAACCCCTCGCCAGCACTCCACCACTGAGAAATTCAATGATTCTGAAGAGAAATTCGAACGCATGATCAACTGTATCACCACCAAAGAAAGGGAAATGAAACAGCTCCTAGTAGACCACCAACATCTCACTCGCAGGCTCTCTGTTTCTTTGTCTTCTTCACGGAGTGGAAGAAGAAAATCTATCTGTGGCTCACAGATTCAGCTAGCAGAGTTGTTCGCCAACAATGGGGTCAAAGTGGTTTCCGCCGATATGCCGCCATTTATGCAGATCCACGCCGTCGATTGCGCTAGAAAGGCCCACGACAGTATGGAAAAATTCACTTCCAAATCGCTGGCGTTGAGTCTCAAACAGGAATTCGATGGGGCATACGGGCCGGCATGGCATTGTATTGTTGGGAAGAGTTTTGGATCATTTGTGACACATTCAGTGGGTGGATTCCTGTATTTTTCCCTGGCTCAAAAGCTTTACATTCTGCTCTTCAAAACCACTGTACTAAGAGCCAATTAG

Protein sequence

MASHQTSHQRLLSPPPKMDLHRRTQPTTPAAATTVSPHPTSPKLDPITPLSDSDNLSKSHPPSPKVVPVSLHSNPKMVGPRTVHKQAKKPNETPRQHSTTEKFNDSEEKFERMINCITTKEREMKQLLVDHQHLTRRLSVSLSSSRSGRRKSICGSQIQLAELFANNGVKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALSLKQEFDGAYGPAWHCIVGKSFGSFVTHSVGGFLYFSLAQKLYILLFKTTVLRAN

Homology

[Close]

BLAST of CmaCh11G001740 vs. ExPASy Swiss-Prot
Match: Q86A88 (Dynein light chain, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=dlcB PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-15
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 169 VKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALSLKQEFDGAYGPAWHCIVGKSFG 228
           + V +ADMP FMQ  A +C  KA +  E    + +A+ +K+EFD  Y P WHCIVGKSFG
Sbjct: 8   INVKNADMPDFMQQDATECTIKAFE--ETNIERDIAMIIKKEFDKKYSPTWHCIVGKSFG 67

Query: 229 SFVTHSVGGFLYFSLAQKLYILLFK 254
           SFVTH    F+YF++  K  +LLFK
Sbjct: 68  SFVTHETKNFIYFNI-NKHSVLLFK 89

[Close]

BLAST of CmaCh11G001740 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.3e-15
Identity = 44/85 (51.76%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 171 VVSADMPPFMQIHAVDCARKAHDSMEKFT-SKSLALSLKQEFDGAYGPAWHCIVGKSFGS 230
           + +ADMP  MQ  AVDCA +A   +EKF   K +A  +K+EFD  Y P WHCIVG++FGS
Sbjct: 8   IKNADMPEDMQQDAVDCATQA---LEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 231 FVTHSVGGFLYFSLAQKLYILLFKT 255
           +VTH    F+YF L Q + +LLFK+
Sbjct: 68  YVTHETKHFIYFYLGQ-VAVLLFKS 88

[Close]

BLAST of CmaCh11G001740 vs. ExPASy Swiss-Prot
Match: Q3MHR3 (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.1e-14
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 171 VVSADMPPFMQIHAVDCARKAHDSMEKFT-SKSLALSLKQEFDGAYGPAWHCIVGKSFGS 230
           + +ADM   MQ  AVDCA +A   MEK+   K +A  +K+EFD  Y P WHCIVG++FGS
Sbjct: 8   IKNADMSEDMQQDAVDCATQA---MEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 231 FVTHSVGGFLYFSLAQKLYILLFKT 255
           +VTH    F+YF L Q + ILLFK+
Sbjct: 68  YVTHETKHFIYFYLGQ-VAILLFKS 88

[Close]

BLAST of CmaCh11G001740 vs. ExPASy Swiss-Prot
Match: Q96FJ2 (Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.1e-14
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 171 VVSADMPPFMQIHAVDCARKAHDSMEKFT-SKSLALSLKQEFDGAYGPAWHCIVGKSFGS 230
           + +ADM   MQ  AVDCA +A   MEK+   K +A  +K+EFD  Y P WHCIVG++FGS
Sbjct: 8   IKNADMSEDMQQDAVDCATQA---MEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 231 FVTHSVGGFLYFSLAQKLYILLFKT 255
           +VTH    F+YF L Q + ILLFK+
Sbjct: 68  YVTHETKHFIYFYLGQ-VAILLFKS 88

[Close]

BLAST of CmaCh11G001740 vs. ExPASy Swiss-Prot
Match: Q9D0M5 (Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.1e-14
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 171 VVSADMPPFMQIHAVDCARKAHDSMEKFT-SKSLALSLKQEFDGAYGPAWHCIVGKSFGS 230
           + +ADM   MQ  AVDCA +A   MEK+   K +A  +K+EFD  Y P WHCIVG++FGS
Sbjct: 8   IKNADMSEDMQQDAVDCATQA---MEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 231 FVTHSVGGFLYFSLAQKLYILLFKT 255
           +VTH    F+YF L Q + ILLFK+
Sbjct: 68  YVTHETKHFIYFYLGQ-VAILLFKS 88

[Close]

BLAST of CmaCh11G001740 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 124.8 bits (312), Expect = 1.0e-28
Identity = 60/92 (65.22%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 169 VKVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALSLKQEFDGAYGPAWHCIVGKSFG 228
           V++++ADMP FMQ HA  CAR   DS+EKF+SK +A +LK+EFD  YGPAWHCIVG SFG
Sbjct: 117 VRILAADMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFG 176

Query: 229 SFVTHSVGGFLYFSLAQKLYILLFKTTVLRAN 261
           SFVTHS G F+YFS+  KLY+LLFKT V  A+
Sbjct: 177 SFVTHSTGCFIYFSM-DKLYVLLFKTKVRPAS 207

[Close]

BLAST of CmaCh11G001740 vs. TAIR 10
Match: AT1G23220.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 92.8 bits (229), Expect = 4.3e-19
Identity = 49/89 (55.06%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 169 VKVVSADMPPFMQIHAVDCARKAHDSME-KFTSKSLALSLKQEFDGAYGPAWHCIVGKSF 228
           V+V ++DMP   Q  A   +R+  ++   K  +K LA +LK++FD AYGPAWHCIVG SF
Sbjct: 36  VRVRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSF 95

Query: 229 GSFVTHSVGGFLYFSLAQKLYILLFKTTV 257
           GS+VTHS GGFLYF +  K+Y+LLFKT V
Sbjct: 96  GSYVTHSTGGFLYFQI-DKVYVLLFKTAV 123

[Close]

BLAST of CmaCh11G001740 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-13
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 171 VVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALSLKQEFDGAYGPAWHCIVGKSFGSF 230
           V  +DMP  MQ+ A+  A +A D  + F  KS+A  +K+EFD  YG  W C+VG +FG F
Sbjct: 8   VEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVVGSNFGCF 67

Query: 231 VTHSVGGFLYFSLAQKLYILLFK 254
            THS G F+YF L + L  L+FK
Sbjct: 68  FTHSKGTFIYFQL-ETLKFLIFK 89

[Close]

BLAST of CmaCh11G001740 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-13
Identity = 40/88 (45.45%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 170 KVVSADMPPFMQIHAVDCARKAHDSMEKFTSKSLALSLKQEFDGAYGPAWHCIVGKSFGS 229
           KV   DMP  MQ+ A+  A ++ D  + F S S+A  +K+EFD  YG  W C+VG +FG 
Sbjct: 7   KVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNFGC 66

Query: 230 FVTHSVGGFLYFSLAQKLYILLFKTTVL 258
           F THS G F+YF L   L  L+FK   L
Sbjct: 67  FFTHSKGTFIYFHLG-TLNFLIFKGATL 93

[Close]

BLAST of CmaCh11G001740 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 72.4 bits (176), Expect = 6.0e-13
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 171 VVSADMPPFMQIHAVDCARKAHDSMEKFT-SKSLALSLKQEFDGAYGPAWHCIVGKSFGS 230
           + SADM   MQ  A++ A  A    EK++  K +A ++K+EFD  +G  WHCIVG++FGS
Sbjct: 42  IKSADMKDDMQKEAIEIAISA---FEKYSVEKDIAENIKKEFDKKHGATWHCIVGRNFGS 101

Query: 231 FVTHSVGGFLYFSLAQKLYILLFKT 255
           +VTH    F+YF L QK  +LLFK+
Sbjct: 102 YVTHETNHFVYFYLDQKA-VLLFKS 122

The following BLAST results are available for this feature:

BLAST of CmaCh11G001740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q86A88	1.3e-15	50.59	Dynein light chain, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=dlcB PE=...	[more]
O02414	6.3e-15	51.76	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
Q3MHR3	4.1e-14	51.76	Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1	[more]
Q96FJ2	4.1e-14	51.76	Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1	[more]
Q9D0M5	4.1e-14	51.76	Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1	[more]

BLAST of CmaCh11G001740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20110.1	1.0e-28	65.22	Dynein light chain type 1 family protein	[more]
AT1G23220.1	4.3e-19	55.06	Dynein light chain type 1 family protein	[more]
AT1G52240.2	1.2e-13	46.99	RHO guanyl-nucleotide exchange factor 11	[more]
AT3G16120.1	1.2e-13	45.45	Dynein light chain type 1 family protein	[more]
AT4G15930.1	6.0e-13	47.06	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 164..254 e-value: 2.4E-37 score: 140.1
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 169..254 e-value: 2.8E-28 score: 98.1
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 35..259
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 163..255 e-value: 2.3E-30 score: 106.4
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 167..254
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..106
None	No IPR available	PANTHER	PTHR11886:SF80	INTRASTRAND CROSS-LINK RECOGNITION PROTEIN-LIKE	coord: 35..259

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G001740.1	CmaCh11G001740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0030286	dynein complex
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding